BLASTX nr result
ID: Coptis21_contig00011223
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011223
(681 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|2... 365 6e-99
ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2... 364 8e-99
ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2... 364 8e-99
ref|XP_002871518.1| beta subunit of rab geranylgeranyltransferas... 361 6e-98
ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2... 358 4e-97
>ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|222857877|gb|EEE95424.1|
predicted protein [Populus trichocarpa]
Length = 313
Score = 365 bits (936), Expect = 6e-99
Identities = 167/202 (82%), Positives = 184/202 (91%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
LQ EDGSF+GD WGE+DSRFSY+AICCLSILHRLDKINV KAV+YI SCKN+DGGFGCTP
Sbjct: 112 LQNEDGSFSGDEWGEVDSRFSYLAICCLSILHRLDKINVEKAVNYIASCKNVDGGFGCTP 171
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
G ESH+GQI CCV ALA+TGSLHHVDKDLLGWWLCERQ KSGGLNGRP K PDVCYSWWV
Sbjct: 172 GGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWV 231
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLEYPG 140
LSSL +IDRVHWI+K++L +FI++CQD ENGGISDRP+ AVDV+HTYFGV GLSLLEYPG
Sbjct: 232 LSSLIMIDRVHWINKDKLVKFILNCQDTENGGISDRPDDAVDVYHTYFGVAGLSLLEYPG 291
Query: 139 LKTIDPAYALPVDVVNNIFFGK 74
LK IDPA+ALPVDVVN IFF K
Sbjct: 292 LKAIDPAHALPVDVVNRIFFQK 313
Score = 64.3 bits (155), Expect = 2e-08
Identities = 40/175 (22%), Positives = 82/175 (46%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
++K SF + + +Y + L +L +LD ++ + +++I+ C++ GGF
Sbjct: 16 VEKRKDSFESVVLEHLRMNGAYWGLATLDLLGKLDALDSNEVIEWIMKCQHESGGFAGNI 75
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
G + H L V LAL L+ +D D + ++ Q++ G +G + D +S+
Sbjct: 76 GHDPHMLYTLSAVQVLALFDKLNVLDADKVANYISGLQNEDGSFSGDEWGEVDSRFSYLA 135
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 155
+ L+I+ R+ I+ + +I C++ + GG P + VG L++
Sbjct: 136 ICCLSILHRLDKINVEKAVNYIASCKNVD-GGFGCTPGGESHAGQIFCCVGALAI 189
>ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis
vinifera] gi|147860391|emb|CAN82570.1| hypothetical
protein VITISV_016117 [Vitis vinifera]
gi|296090220|emb|CBI40039.3| unnamed protein product
[Vitis vinifera]
Length = 317
Score = 364 bits (935), Expect = 8e-99
Identities = 168/202 (83%), Positives = 183/202 (90%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
LQ EDGSF+GDMWGEID+RFSYIAIC LS+L RLDKINV KAV+YI+SCKNLDGGFGCTP
Sbjct: 116 LQNEDGSFSGDMWGEIDTRFSYIAICSLSLLQRLDKINVEKAVNYIVSCKNLDGGFGCTP 175
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
GAESH+GQI CCV+ALALTGSLHHVDKDLLGWWLCERQ KSG LNGRP K PDVCYSWWV
Sbjct: 176 GAESHAGQIFCCVSALALTGSLHHVDKDLLGWWLCERQVKSGALNGRPEKLPDVCYSWWV 235
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLEYPG 140
LSSL +IDR HWIDK +L +FI+DCQDKENGGISDRP+ AVDVFHTYFGV GL+ LEYPG
Sbjct: 236 LSSLIMIDRAHWIDKEKLIKFILDCQDKENGGISDRPDDAVDVFHTYFGVAGLAHLEYPG 295
Query: 139 LKTIDPAYALPVDVVNNIFFGK 74
LK +DPAYALPVDVVN IFF +
Sbjct: 296 LKAVDPAYALPVDVVNRIFFSR 317
Score = 65.9 bits (159), Expect = 7e-09
Identities = 34/151 (22%), Positives = 76/151 (50%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
++K +F + + +Y + L +L +LD ++ + + +++ C++ GGFG
Sbjct: 20 VEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIISWVMECQHESGGFGGNV 79
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
G + H L V LAL L+ +D D + ++ Q++ G +G + D +S+
Sbjct: 80 GHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQNEDGSFSGDMWGEIDTRFSYIA 139
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENG 227
+ SL+++ R+ I+ + +I+ C++ + G
Sbjct: 140 ICSLSLLQRLDKINVEKAVNYIVSCKNLDGG 170
Score = 57.8 bits (138), Expect = 2e-06
Identities = 39/145 (26%), Positives = 67/145 (46%)
Frame = -3
Query: 583 RLDKINVGKAVDYILSCKNLDGGFGCTPGAESHSGQILCCVAALALTGSLHHVDKDLLGW 404
++ + V K V YILS + F + L L G L VD+D +
Sbjct: 4 QIGDLEVEKHVQYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIIS 63
Query: 403 WLCERQDKSGGLNGRPMKDPDVCYSWWVLSSLTIIDRVHWIDKNELARFIIDCQDKENGG 224
W+ E Q +SGG G DP + Y+ + L + D+++ +D ++++ +I Q+ E+G
Sbjct: 64 WVMECQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQN-EDGS 122
Query: 223 ISDRPNFAVDVFHTYFGVGGLSLLE 149
S +D +Y + LSLL+
Sbjct: 123 FSGDMWGEIDTRFSYIAICSLSLLQ 147
>ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis
vinifera] gi|147821440|emb|CAN74579.1| hypothetical
protein VITISV_024797 [Vitis vinifera]
gi|296081232|emb|CBI17976.3| unnamed protein product
[Vitis vinifera]
Length = 317
Score = 364 bits (935), Expect = 8e-99
Identities = 168/202 (83%), Positives = 183/202 (90%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
LQ DGSF+GDMWGEID+RFSYIAICCLS+L LDKINV KAV+YI+SCKNLDGGFGCTP
Sbjct: 116 LQNVDGSFSGDMWGEIDTRFSYIAICCLSLLQCLDKINVEKAVNYIVSCKNLDGGFGCTP 175
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
GAESH+GQI CCV ALALTGSLHHVDKDLLGWWLCERQ KSGGLNGRP K PDVCYSWWV
Sbjct: 176 GAESHAGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWV 235
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLEYPG 140
LSSL +IDR HWIDK++L +FIIDCQD+ENGGISDRP+ AVDVFHTYFGV GLSLLEYPG
Sbjct: 236 LSSLIMIDRAHWIDKDKLIKFIIDCQDRENGGISDRPDDAVDVFHTYFGVAGLSLLEYPG 295
Query: 139 LKTIDPAYALPVDVVNNIFFGK 74
+K +DPAYALPV VVN IFF +
Sbjct: 296 VKAVDPAYALPVHVVNRIFFSR 317
Score = 58.9 bits (141), Expect = 9e-07
Identities = 38/175 (21%), Positives = 80/175 (45%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
++K F + + +Y + L +L +L+ ++ + V +++ C++ GGFG
Sbjct: 20 VEKRKDDFESVVTEHLRMNGAYWGLTTLDLLGKLEIVDQDEVVSWVMECQHESGGFGGNI 79
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
G + H L V LAL L+ +D D + ++ Q+ G +G + D +S+
Sbjct: 80 GHDPHIVHTLSAVQVLALFDKLNVLDIDKITNYIAGLQNVDGSFSGDMWGEIDTRFSYIA 139
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 155
+ L+++ + I+ + +I+ C++ + GG P + VG L+L
Sbjct: 140 ICCLSLLQCLDKINVEKAVNYIVSCKNLD-GGFGCTPGAESHAGQIFCCVGALAL 193
>ref|XP_002871518.1| beta subunit of rab geranylgeranyltransferase [Arabidopsis lyrata
subsp. lyrata] gi|297317355|gb|EFH47777.1| beta subunit
of rab geranylgeranyltransferase [Arabidopsis lyrata
subsp. lyrata]
Length = 313
Score = 361 bits (927), Expect = 6e-98
Identities = 168/202 (83%), Positives = 181/202 (89%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
LQ EDGSF+GDMWGEID+RFSYIAICCLSIL LDKINV KAV+YI+SCKNLDGGFGCTP
Sbjct: 112 LQNEDGSFSGDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVEYIVSCKNLDGGFGCTP 171
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
GAESH+GQI CCV ALA+TGSLHHVDKDLLGWWLCERQ K GGLNGRP K DVCYSWWV
Sbjct: 172 GAESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQLKGGGLNGRPEKLADVCYSWWV 231
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLEYPG 140
LSSL +IDRVHWIDK +L +FI+DCQD ENGGISDRP+ AVD+FHTYFGV GLSLLEYPG
Sbjct: 232 LSSLIMIDRVHWIDKAKLVKFILDCQDLENGGISDRPDDAVDIFHTYFGVAGLSLLEYPG 291
Query: 139 LKTIDPAYALPVDVVNNIFFGK 74
+K IDPAYALPVDVVN I F K
Sbjct: 292 VKVIDPAYALPVDVVNRIIFTK 313
Score = 56.2 bits (134), Expect = 6e-06
Identities = 36/174 (20%), Positives = 81/174 (46%)
Frame = -3
Query: 676 QKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTPG 497
+K+ SF + + +Y + L +L +L ++ + V ++++C++ GGF G
Sbjct: 17 EKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEDEVVSWLMTCQHESGGFAGNTG 76
Query: 496 AESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWVL 317
+ H L V LAL ++ +D + ++ + Q++ G +G + D +S+ +
Sbjct: 77 HDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDTRFSYIAI 136
Query: 316 SSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 155
L+I+ + I+ + +I+ C++ + GG P + VG L++
Sbjct: 137 CCLSILKCLDKINVEKAVEYIVSCKNLD-GGFGCTPGAESHAGQIFCCVGALAI 189
>ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like
[Cucumis sativus] gi|449490992|ref|XP_004158768.1|
PREDICTED: geranylgeranyl transferase type-2 subunit
beta-like [Cucumis sativus]
Length = 317
Score = 358 bits (920), Expect = 4e-97
Identities = 164/202 (81%), Positives = 181/202 (89%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
LQ EDGSF+GD+WGE+DSRFSYIAI CLS+LH+LDKINV KAV++++SCKN+DGGFGCTP
Sbjct: 112 LQNEDGSFSGDIWGEVDSRFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTP 171
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
G ESHSGQI CCV ALALTGSLHHVDKDLLGWWLCERQ KSGGLNGRP K PDVCYSWWV
Sbjct: 172 GGESHSGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWV 231
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSLLEYPG 140
LSSL +IDRVHWI K +L +FI+DCQD ENGGISDRP+ AVDV+HTYFG+ GLSLLEYP
Sbjct: 232 LSSLIMIDRVHWISKEKLIKFILDCQDTENGGISDRPDDAVDVYHTYFGIAGLSLLEYPS 291
Query: 139 LKTIDPAYALPVDVVNNIFFGK 74
LK IDPAYALPVDVVN I GK
Sbjct: 292 LKPIDPAYALPVDVVNRIRLGK 313
Score = 62.4 bits (150), Expect = 8e-08
Identities = 40/175 (22%), Positives = 82/175 (46%)
Frame = -3
Query: 679 LQKEDGSFAGDMWGEIDSRFSYIAICCLSILHRLDKINVGKAVDYILSCKNLDGGFGCTP 500
++K+ F + + +Y + L IL +LD ++ + V +++SC++ GGF
Sbjct: 16 VEKKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSWVMSCQHESGGFSGNV 75
Query: 499 GAESHSGQILCCVAALALTGSLHHVDKDLLGWWLCERQDKSGGLNGRPMKDPDVCYSWWV 320
G + H L V LAL L +D D + ++ Q++ G +G + D +S+
Sbjct: 76 GHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDSRFSYIA 135
Query: 319 LSSLTIIDRVHWIDKNELARFIIDCQDKENGGISDRPNFAVDVFHTYFGVGGLSL 155
+ L+++ ++ I+ + F++ C++ + GG P + VG L+L
Sbjct: 136 ILCLSLLHQLDKINVEKAVNFVVSCKNMD-GGFGCTPGGESHSGQIFCCVGALAL 189