BLASTX nr result
ID: Coptis21_contig00011217
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00011217 (325 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_196272.1| pentatricopeptide repeat-containing protein [Ar... 111 5e-23 ref|XP_002873264.1| pentatricopeptide repeat-containing protein ... 111 7e-23 ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containi... 110 9e-23 ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi... 108 5e-22 ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containi... 108 6e-22 >ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 622 Score = 111 bits (278), Expect = 5e-23 Identities = 46/105 (43%), Positives = 77/105 (73%) Frame = +3 Query: 6 YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185 Y G + A ++F +M RD+++W +M+ G+ + G+VE AR++FDE P RN+ TWS++I Sbjct: 162 YANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMI 221 Query: 186 SGFSQGSRFGEALKMFKEMLVEGVMPNQAILVSVLSCCAHLGALE 320 +G+++ + F +A+ +F+ M EGV+ N+ ++VSV+S CAHLGALE Sbjct: 222 NGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALE 266 >ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 624 Score = 111 bits (277), Expect = 7e-23 Identities = 46/105 (43%), Positives = 77/105 (73%) Frame = +3 Query: 6 YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185 Y G + A ++F +M RD+++W +M+ G+ + G+VE AR++FDE P RN+ TWS++I Sbjct: 164 YANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMI 223 Query: 186 SGFSQGSRFGEALKMFKEMLVEGVMPNQAILVSVLSCCAHLGALE 320 +G+++ + F +A+ +F+ M EGV+ N+ ++VSV+S CAHLGALE Sbjct: 224 NGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALE 268 >ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] Length = 632 Score = 110 bits (276), Expect = 9e-23 Identities = 50/106 (47%), Positives = 78/106 (73%), Gaps = 1/106 (0%) Frame = +3 Query: 6 YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185 Y K+GC +A KLF+EM VRD+++WNT+I G+ G+V+ AR +FD +N+ +WS +I Sbjct: 172 YFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMI 231 Query: 186 SGFSQGSRFGEALKMFKEMLVE-GVMPNQAILVSVLSCCAHLGALE 320 SG+++ ++ +A+++F++M E G+ PN LVSVLS CAHLGAL+ Sbjct: 232 SGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALD 277 Score = 55.1 bits (131), Expect = 6e-06 Identities = 26/81 (32%), Positives = 44/81 (54%) Frame = +3 Query: 81 NTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKEMLVEGVM 260 N + +A+ G V A+ +F E R+V +WS+II G + EA F EM+ +G+ Sbjct: 299 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 358 Query: 261 PNQAILVSVLSCCAHLGALEQ 323 PN + +L+ C H G +++ Sbjct: 359 PNDISFMGLLTACTHAGLVDK 379 >ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Vitis vinifera] Length = 536 Score = 108 bits (270), Expect = 5e-22 Identities = 50/106 (47%), Positives = 73/106 (68%) Frame = +3 Query: 6 YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185 Y + G +E+A LF+EM+ R++ +WN MI G+ GL+E AR++F E P +NV +W+ +I Sbjct: 184 YAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMI 243 Query: 186 SGFSQGSRFGEALKMFKEMLVEGVMPNQAILVSVLSCCAHLGALEQ 323 +G+S RF E L +F++M GV P+ LVSVLS CAH+GAL Q Sbjct: 244 TGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQ 289 Score = 63.9 bits (154), Expect = 1e-08 Identities = 32/92 (34%), Positives = 55/92 (59%) Frame = +3 Query: 48 NEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALK 227 N +S+ +A ++ +++ G +E A ++F+ ++++TW+ IISG S AL+ Sbjct: 300 NGISIDGFVA-TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQ 358 Query: 228 MFKEMLVEGVMPNQAILVSVLSCCAHLGALEQ 323 +F EMLVEG PN+ V VLS C+ G L++ Sbjct: 359 IFSEMLVEGFKPNEVTFVCVLSACSRAGLLDE 390 >ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like, partial [Cucumis sativus] Length = 610 Score = 108 bits (269), Expect = 6e-22 Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 1/107 (0%) Frame = +3 Query: 3 GYVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVI 182 GY+++G ++ A KLF+ M RD ++WNTM+ G+A G VE +LF+E P RNV +W+ + Sbjct: 229 GYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGL 288 Query: 183 ISGFSQGSRFGEALKMFKEMLVEG-VMPNQAILVSVLSCCAHLGALE 320 I G++ F E L+ FK ML++G V+PN A LV+VLS CA LGAL+ Sbjct: 289 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALD 335 Score = 58.5 bits (140), Expect = 5e-07 Identities = 29/70 (41%), Positives = 43/70 (61%) Frame = +3 Query: 33 ASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRF 212 A KLF M R+I+AW +MI G+ V +AR+LFD AP R+V W++++SG+ + Sbjct: 177 AYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDM 236 Query: 213 GEALKMFKEM 242 A K+F M Sbjct: 237 KAARKLFDTM 246