BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011217
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_196272.1| pentatricopeptide repeat-containing protein [Ar...   111   5e-23
ref|XP_002873264.1| pentatricopeptide repeat-containing protein ...   111   7e-23
ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   108   5e-22
ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containi...   108   6e-22

>ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g06540 gi|10178110|dbj|BAB11403.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332003649|gb|AED91032.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  111 bits (278), Expect = 5e-23
 Identities = 46/105 (43%), Positives = 77/105 (73%)
 Frame = +3

Query: 6   YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185
           Y   G +  A ++F +M  RD+++W +M+ G+ + G+VE AR++FDE P RN+ TWS++I
Sbjct: 162 YANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMI 221

Query: 186 SGFSQGSRFGEALKMFKEMLVEGVMPNQAILVSVLSCCAHLGALE 320
           +G+++ + F +A+ +F+ M  EGV+ N+ ++VSV+S CAHLGALE
Sbjct: 222 NGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALE 266


>ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319101|gb|EFH49523.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 624

 Score =  111 bits (277), Expect = 7e-23
 Identities = 46/105 (43%), Positives = 77/105 (73%)
 Frame = +3

Query: 6   YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185
           Y   G +  A ++F +M  RD+++W +M+ G+ + G+VE AR++FDE P RN+ TWS++I
Sbjct: 164 YANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMI 223

Query: 186 SGFSQGSRFGEALKMFKEMLVEGVMPNQAILVSVLSCCAHLGALE 320
           +G+++ + F +A+ +F+ M  EGV+ N+ ++VSV+S CAHLGALE
Sbjct: 224 NGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALE 268


>ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  110 bits (276), Expect = 9e-23
 Identities = 50/106 (47%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
 Frame = +3

Query: 6   YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185
           Y K+GC  +A KLF+EM VRD+++WNT+I G+   G+V+ AR +FD    +N+ +WS +I
Sbjct: 172 YFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMI 231

Query: 186 SGFSQGSRFGEALKMFKEMLVE-GVMPNQAILVSVLSCCAHLGALE 320
           SG+++  ++ +A+++F++M  E G+ PN   LVSVLS CAHLGAL+
Sbjct: 232 SGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALD 277



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%)
 Frame = +3

Query: 81  NTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKEMLVEGVM 260
           N +   +A+ G V  A+ +F E   R+V +WS+II G +      EA   F EM+ +G+ 
Sbjct: 299 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 358

Query: 261 PNQAILVSVLSCCAHLGALEQ 323
           PN    + +L+ C H G +++
Sbjct: 359 PNDISFMGLLTACTHAGLVDK 379


>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  108 bits (270), Expect = 5e-22
 Identities = 50/106 (47%), Positives = 73/106 (68%)
 Frame = +3

Query: 6   YVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVII 185
           Y + G +E+A  LF+EM+ R++ +WN MI G+   GL+E AR++F E P +NV +W+ +I
Sbjct: 184 YAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMI 243

Query: 186 SGFSQGSRFGEALKMFKEMLVEGVMPNQAILVSVLSCCAHLGALEQ 323
           +G+S   RF E L +F++M   GV P+   LVSVLS CAH+GAL Q
Sbjct: 244 TGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQ 289



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/92 (34%), Positives = 55/92 (59%)
 Frame = +3

Query: 48  NEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALK 227
           N +S+   +A   ++  +++ G +E A ++F+    ++++TW+ IISG S       AL+
Sbjct: 300 NGISIDGFVA-TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQ 358

Query: 228 MFKEMLVEGVMPNQAILVSVLSCCAHLGALEQ 323
           +F EMLVEG  PN+   V VLS C+  G L++
Sbjct: 359 IFSEMLVEGFKPNEVTFVCVLSACSRAGLLDE 390


>ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  108 bits (269), Expect = 6e-22
 Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
 Frame = +3

Query: 3   GYVKLGCVEMASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVI 182
           GY+++G ++ A KLF+ M  RD ++WNTM+ G+A  G VE   +LF+E P RNV +W+ +
Sbjct: 229 GYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGL 288

Query: 183 ISGFSQGSRFGEALKMFKEMLVEG-VMPNQAILVSVLSCCAHLGALE 320
           I G++    F E L+ FK ML++G V+PN A LV+VLS CA LGAL+
Sbjct: 289 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALD 335



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +3

Query: 33  ASKLFNEMSVRDIIAWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRF 212
           A KLF  M  R+I+AW +MI G+     V +AR+LFD AP R+V  W++++SG+ +    
Sbjct: 177 AYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDM 236

Query: 213 GEALKMFKEM 242
             A K+F  M
Sbjct: 237 KAARKLFDTM 246