BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011170
         (1240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containi...   370   e-100
emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]   368   2e-99
emb|CBI32989.3| unnamed protein product [Vitis vinifera]              366   8e-99
ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containi...   339   8e-91
ref|XP_002518506.1| pentatricopeptide repeat-containing protein,...   335   1e-89

>ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Vitis vinifera]
          Length = 396

 Score =  370 bits (949), Expect = e-100
 Identities = 183/283 (64%), Positives = 232/283 (81%), Gaps = 1/283 (0%)
 Frame = +1

Query: 1   GQAGMLDNAKRTFKTMGEAGISPTVKSLNALLLACVIGKKYDEVNSIFVEFPKSYGIQCN 180
           GQAGML++A RTF+ M + G+  TV+SLNALL +C++ K Y E N IF+EFPK+YGI+ N
Sbjct: 115 GQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELN 174

Query: 181 LDTFNTVIKAFSESGNTSSVYSILAEMDRKRIEPNATTFGTMLAGFYKEEKDKDVGNVLV 360
           LD++NTV+KAFSESG++SS YSILAEM RK ++PNAT+FG +LAGFY EEK +DVG VL 
Sbjct: 175 LDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLK 234

Query: 361 LMKQHGVKLGLSTYNIRIQSLCKLKKSGEAKALLYEEMLARGMKPNVVTYFHLIFGFGKE 540
           +M+++ ++ G+STYNIRIQSLCKLKKS EAKALL + +LAR MKPN  TY HLI GF KE
Sbjct: 235 MMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALL-DGILARRMKPNSETYCHLIHGFCKE 293

Query: 541 GNVEEIWRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKASMLKQWFPNFATM 720
           GN++E  +L+ DM  +G +PD+ CY+TLVY+LCQGGDFE+ALR CK  M K WFPN +TM
Sbjct: 294 GNLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTM 353

Query: 721 KMLVDGLVSISKVEEARELVGKMKERFTK-VDLWKEIEEGLPQ 846
             LV+GLVSISKVEEAREL+G++KE+F++ VD W EIE GLPQ
Sbjct: 354 TSLVNGLVSISKVEEARELIGQIKEKFSRNVDKWNEIEAGLPQ 396


>emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]
          Length = 396

 Score =  368 bits (945), Expect = 2e-99
 Identities = 182/283 (64%), Positives = 232/283 (81%), Gaps = 1/283 (0%)
 Frame = +1

Query: 1   GQAGMLDNAKRTFKTMGEAGISPTVKSLNALLLACVIGKKYDEVNSIFVEFPKSYGIQCN 180
           GQAGML++A RTF+ M + G+  TV+SLNALL +C++ K Y E N IF+EFPK+YGI+ N
Sbjct: 115 GQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELN 174

Query: 181 LDTFNTVIKAFSESGNTSSVYSILAEMDRKRIEPNATTFGTMLAGFYKEEKDKDVGNVLV 360
           LD++NTV+KAFSESG++SS YSILAEM RK ++PNAT+FG +LAGFY EEK +DVG VL 
Sbjct: 175 LDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLK 234

Query: 361 LMKQHGVKLGLSTYNIRIQSLCKLKKSGEAKALLYEEMLARGMKPNVVTYFHLIFGFGKE 540
           +M+++ ++ G+STYNIRIQSLCKLKKS EAKALL + +LAR MKPN  TY HLI GF KE
Sbjct: 235 MMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALL-DGILARRMKPNSETYCHLIHGFCKE 293

Query: 541 GNVEEIWRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKASMLKQWFPNFATM 720
           GN++E  +L+ DM  +G +PD+ CY+TLVY+LCQGGDFE+ALR CK  M K WFPN +TM
Sbjct: 294 GNLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTM 353

Query: 721 KMLVDGLVSISKVEEARELVGKMKERFTK-VDLWKEIEEGLPQ 846
             LV+GLVSISKVEEA+EL+G++KE+F++ VD W EIE GLPQ
Sbjct: 354 TSLVNGLVSISKVEEAQELIGQIKEKFSRNVDKWNEIEAGLPQ 396


>emb|CBI32989.3| unnamed protein product [Vitis vinifera]
          Length = 412

 Score =  366 bits (939), Expect = 8e-99
 Identities = 181/282 (64%), Positives = 231/282 (81%), Gaps = 1/282 (0%)
 Frame = +1

Query: 4   QAGMLDNAKRTFKTMGEAGISPTVKSLNALLLACVIGKKYDEVNSIFVEFPKSYGIQCNL 183
           +AGML++A RTF+ M + G+  TV+SLNALL +C++ K Y E N IF+EFPK+YGI+ NL
Sbjct: 132 RAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELNL 191

Query: 184 DTFNTVIKAFSESGNTSSVYSILAEMDRKRIEPNATTFGTMLAGFYKEEKDKDVGNVLVL 363
           D++NTV+KAFSESG++SS YSILAEM RK ++PNAT+FG +LAGFY EEK +DVG VL +
Sbjct: 192 DSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKM 251

Query: 364 MKQHGVKLGLSTYNIRIQSLCKLKKSGEAKALLYEEMLARGMKPNVVTYFHLIFGFGKEG 543
           M+++ ++ G+STYNIRIQSLCKLKKS EAKALL + +LAR MKPN  TY HLI GF KEG
Sbjct: 252 MEEYKMQPGISTYNIRIQSLCKLKKSSEAKALL-DGILARRMKPNSETYCHLIHGFCKEG 310

Query: 544 NVEEIWRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKASMLKQWFPNFATMK 723
           N++E  +L+ DM  +G +PD+ CY+TLVY+LCQGGDFE+ALR CK  M K WFPN +TM 
Sbjct: 311 NLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTMT 370

Query: 724 MLVDGLVSISKVEEARELVGKMKERFTK-VDLWKEIEEGLPQ 846
            LV+GLVSISKVEEAREL+G++KE+F++ VD W EIE GLPQ
Sbjct: 371 SLVNGLVSISKVEEARELIGQIKEKFSRNVDKWNEIEAGLPQ 412


>ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449471723|ref|XP_004153390.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449530564|ref|XP_004172264.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
          Length = 405

 Score =  339 bits (870), Expect = 8e-91
 Identities = 170/283 (60%), Positives = 220/283 (77%), Gaps = 1/283 (0%)
 Frame = +1

Query: 1   GQAGMLDNAKRTFKTMGEAGISPTVKSLNALLLACVIGKKYDEVNSIFVEFPKSYGIQCN 180
           GQA MLD+A RTFK + E G+  +VK+LNALL AC + K Y E+  +++EFPK YGI+ +
Sbjct: 124 GQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGIEPD 183

Query: 181 LDTFNTVIKAFSESGNTSSVYSILAEMDRKRIEPNATTFGTMLAGFYKEEKDKDVGNVLV 360
           +DT+N VIKAFSESG++SSV SI+AEMDRK ++PNATTF   LAG Y EEK +DV  VL 
Sbjct: 184 IDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLN 243

Query: 361 LMKQHGVKLGLSTYNIRIQSLCKLKKSGEAKALLYEEMLARGMKPNVVTYFHLIFGFGKE 540
           LM+++GV+ G++TYN RI+SLCKLK+S EAKA L++ ML+RGM PN VTY  LI GF KE
Sbjct: 244 LMEKYGVRRGVATYNARIRSLCKLKRSTEAKA-LFDGMLSRGMDPNSVTYCELIHGFCKE 302

Query: 541 GNVEEIWRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKASMLKQWFPNFATM 720
           GN++E   ++  M   G +PD+ CY+TL Y+LC+GGD+E A + C  SM K W PNF+TM
Sbjct: 303 GNLDEAKSIFKRMINSGCQPDSECYFTLTYFLCRGGDYETAFKICLESMKKGWVPNFSTM 362

Query: 721 KMLVDGLVSISKVEEARELVGKMKERFTK-VDLWKEIEEGLPQ 846
           K LVDGLVSISKVEEA++L+G++KERF+K V+ W EIE GLPQ
Sbjct: 363 KSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 405


>ref|XP_002518506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542351|gb|EEF43893.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 397

 Score =  335 bits (859), Expect = 1e-89
 Identities = 173/288 (60%), Positives = 222/288 (77%), Gaps = 6/288 (2%)
 Frame = +1

Query: 1   GQAGMLDNAKRTFKTMGE----AGISPTVKSLNALLLACVIGKKYDEVNSIFVEFPKSYG 168
           GQA M+D+A RTFK         G + +VK  NALL AC + K Y EV  +F+EFPK+Y 
Sbjct: 111 GQAAMVDHAVRTFKEYHTDVIGLGNNGSVKVFNALLFACYLAKDYSEVKRVFLEFPKNYN 170

Query: 169 IQCNLDTFNTVIKAFSESGNTSSVYSILAEMDRKRIEPNATTFGTMLAGFYKEEKDKDVG 348
           I+ NLD++NTVIK+F +S ++SS +S+LAEMDRKR++PNATTFG +LAGFYKEEK +DVG
Sbjct: 171 IEPNLDSYNTVIKSFCDSESSSSGFSVLAEMDRKRLKPNATTFGHLLAGFYKEEKYEDVG 230

Query: 349 NVLVLMK-QHGVKLGLSTYNIRIQSLCKLKKSGEAKALLYEEMLARGMKPNVVTYFHLIF 525
            VL +MK ++G++ G+STYNIRIQSLCKLKKS EAKALL + ML+R MKPN VTY HLI 
Sbjct: 231 KVLEMMKDKYGIRPGVSTYNIRIQSLCKLKKSAEAKALL-DGMLSRQMKPNSVTYAHLIH 289

Query: 526 GFGKEGNVEEIWRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKASMLKQWFP 705
           GF  EG++E   RL+ DM  +G +PD++CY+TL++YLC+G DFE ALR CK S+ K W P
Sbjct: 290 GFCNEGDLEGGKRLFKDMVNRGYQPDSACYFTLLHYLCKGQDFETALRICKESIGKDWVP 349

Query: 706 NFATMKMLVDGLVSISKVEEARELVGKMKERFTK-VDLWKEIEEGLPQ 846
           N ATMK LV+GL  I KV+EA+EL+ K+KE+FTK V  W+EIE GLP+
Sbjct: 350 NIATMKSLVNGLAGIGKVDEAKELIAKIKEKFTKNVSTWEEIEAGLPR 397