BLASTX nr result

ID: Coptis21_contig00011127 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011127
         (1991 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19050.3| unnamed protein product [Vitis vinifera]              512   e-142
ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|2...   508   e-141
gb|AAG51632.1|AC012193_14 putative 3'-5' exoribonuclease, 3' par...   456   e-126
ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cuc...   446   e-122
ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vit...   436   e-119

>emb|CBI19050.3| unnamed protein product [Vitis vinifera]
          Length = 1007

 Score =  512 bits (1318), Expect = e-142
 Identities = 292/560 (52%), Positives = 358/560 (63%), Gaps = 39/560 (6%)
 Frame = +1

Query: 427  VASTSLPPMHIHQPPI----------------------LRSCPHPNGSLNHLDAHT---- 528
            VA TSLP MH+++  +                       +SCP P      + + T    
Sbjct: 92   VAFTSLPTMHLNEQALHAEVGSMNNQHIFPSDPSGGMCSKSCPVPIDCEQSIQSFTNKNV 151

Query: 529  ----------PRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVL 678
                       R +F PHWS  +VN A++  +VF A+FRVNA+NRLEAYCTI+G+  DVL
Sbjct: 152  LSPYQDEGCAQRKYFTPHWSTEVVNEALEKGNVFRASFRVNAYNRLEAYCTIEGVKTDVL 211

Query: 679  ISGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHTKNCTPLDGLVLLKEVEGVGDNCKL 858
            ISG A+QNRAVEGD+VAV++D  SLW+R+KGS     N             E +G N  +
Sbjct: 212  ISGLASQNRAVEGDIVAVKVDPFSLWSRMKGSTVFPNNAAENISQ------EPMGHN-HV 264

Query: 859  KEKVDDCXXXXXXXXXXXXXXXXXXXXXCALVSTFPSKRPTGRVVAIIQKSPRRDALVGF 1038
                                        CA +++FPSKRPTG VVAII++SPRR A+VGF
Sbjct: 265  NGHHPPVFGPSHVSCFGERSNMDSLEKICAAINSFPSKRPTGSVVAIIERSPRRVAVVGF 324

Query: 1039 LGVSQWRPSGGEGFQKETNQNKTFVSYSNQEFIELIPNDAKFPKMLVCLRDLPEYIKKRL 1218
            L V QW  S     +K T  NKT++S S+ E+I+L P D KFPKM+V ++ L + IKKRL
Sbjct: 325  LSVKQWL-SSRVLHRKGTKMNKTYLSLSDSEYIQLTPTDPKFPKMVVPVKGLSDCIKKRL 383

Query: 1219 MKSDA---MELVAVRIENWREDSLLPHACVMHSFGRGGEIEPHLAAILFENSICVTEFSP 1389
               DA   MELVA +I +W E+S LP A VMH FGRGGEIEP +AAILFEN+I  +EFSP
Sbjct: 384  EDGDASMEMELVAAQISDWGEESSLPLAHVMHIFGRGGEIEPRIAAILFENAIRPSEFSP 443

Query: 1390 ESLSNLPKFPWEVPAEELERRKDLRHLCTLTIDPSTATDLDDALSVQRVSDSIFRIGVHI 1569
            ESLS LP  PW+VP EE+ERR+DLR+LC  TIDPSTATDLDDALSV+++S   FR+GVHI
Sbjct: 444  ESLSCLPHIPWKVPQEEIERRRDLRNLCIFTIDPSTATDLDDALSVEKLSGGNFRVGVHI 503

Query: 1570 ADVSYFVLPDTPLDIEAQTRSTSVYLRHRKIPMLPALLSENIGSLVPGVDRLAYSIMFDC 1749
            AD SYFVLPD  LD EAQ+RSTSVYL   K+PMLP LLSEN+GSL+PGVDRLA+SI +D 
Sbjct: 504  ADASYFVLPDGVLDREAQSRSTSVYLLQHKLPMLPPLLSENLGSLIPGVDRLAFSIFWDI 563

Query: 1750 NLAGDVVDRWIGRTVIRSCCKLSYQHAQYIIDGLMDVERHDTVVSQFPEVYGQFGKVDVI 1929
            NLAGDVVDRWIGRTVI+SCCKLSY+HAQ IIDG+ DVE                    VI
Sbjct: 564  NLAGDVVDRWIGRTVIQSCCKLSYEHAQGIIDGMFDVE--------------------VI 603

Query: 1930 GSVKILTEISKRLKENRYRD 1989
             S+K L  ISK L+ NR+ D
Sbjct: 604  RSIKYLYAISKTLRANRFND 623


>ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|222843977|gb|EEE81524.1|
            predicted protein [Populus trichocarpa]
          Length = 860

 Score =  508 bits (1307), Expect = e-141
 Identities = 282/568 (49%), Positives = 363/568 (63%), Gaps = 49/568 (8%)
 Frame = +1

Query: 427  VASTSLPPMHIHQPP------------ILRSCPHP------NGSL---NHLDAHTPRIHF 543
            +A +S+P MH+++              + +SC  P      +G L   +  +       F
Sbjct: 3    IAYSSMPTMHVNEQQEDLVLSDLDGSMLAKSCTEPIVGGGPHGKLLPFHQFEGQAQSKIF 62

Query: 544  EPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVLISGGAAQNRAVEGDV 723
             P+WS   VN A++  DVF   FRVNAHNRLEAYC I+G+P DVLISG AAQNRA++GDV
Sbjct: 63   APYWSTETVNEALEKGDVFKVLFRVNAHNRLEAYCKIEGVPTDVLISGIAAQNRAMDGDV 122

Query: 724  VAVQLDSLSLWTRLKGSAGHTKNCTPLDG----------------LVLLKEV-------- 831
            V +++D LS WT++KGS   + N T  D                 LV  K +        
Sbjct: 123  VVIEVDPLSFWTKMKGSNVPSNNPTAEDSNLHLEANGKCADFGNSLVPQKGIHYDETACA 182

Query: 832  -EGVGDNCKLKEKVDDCXXXXXXXXXXXXXXXXXXXXXCALVSTFPSKRPTGRVVAIIQK 1008
             E V DN                               CA++S +PSKRPTGRVVAI++K
Sbjct: 183  GEVVHDNYVNGYHQSASESSLAVPSTGQDEVSNSVGRICAMLSLYPSKRPTGRVVAIVEK 242

Query: 1009 SPRRDALVGFLGVSQWRPSGGEGFQKETNQNKTFVSYSNQEFIELIPNDAKFPKMLVCLR 1188
            SPRRD +VGFL V QW     EG ++   +NK+ +S SN+E+IE++P D +FPK++V + 
Sbjct: 243  SPRRDVIVGFLNVKQWFYYR-EGCRQNAKKNKSSLSISNREYIEMMPTDPRFPKLMVLVS 301

Query: 1189 DLPEYIKKRLMKSDA---MELVAVRIENWREDSLLPHACVMHSFGRGGEIEPHLAAILFE 1359
             LP+ IKKRL   DA   MELVA +I+NW + S  P A V   FGRG E+E  + AIL E
Sbjct: 302  VLPDCIKKRLENEDATVEMELVAAQIDNWSDKSPFPEAHVSCIFGRGSEMESQINAILHE 361

Query: 1360 NSICVTEFSPESLSNLPKFPWEVPAEELERRKDLRHLCTLTIDPSTATDLDDALSVQRVS 1539
            N+IC ++FSPESLS LP   WEVP +E+E RKD+R+LC  TIDPS+ATDLDDALSVQ++ 
Sbjct: 362  NAICCSKFSPESLSCLPSNTWEVPKDEIENRKDIRNLCIFTIDPSSATDLDDALSVQKLP 421

Query: 1540 DSIFRIGVHIADVSYFVLPDTPLDIEAQTRSTSVYLRHRKIPMLPALLSENIGSLVPGVD 1719
            + + R+GVHIADVSYFVLPDT LD+EAQ RSTSVY+  RKIPMLP LLSEN+GSL PGVD
Sbjct: 422  NGLVRVGVHIADVSYFVLPDTALDMEAQFRSTSVYMLRRKIPMLPPLLSENLGSLNPGVD 481

Query: 1720 RLAYSIMFDCNLAGDVVDRWIGRTVIRSCCKLSYQHAQYIIDGLMDVERHDTVVSQFPEV 1899
            RLA+SI +D N +G+VVDRWI RTVI+SCCKLSY+HAQ I+DG++D E  +T     P++
Sbjct: 482  RLAFSIFWDFNSSGNVVDRWIDRTVIQSCCKLSYEHAQGIVDGMIDTETCNTFGDSLPQL 541

Query: 1900 YGQFGKVDVIGSVKILTEISKRLKENRY 1983
            +G F   DVIGSV  L EISK L+E R+
Sbjct: 542  HGHFEWADVIGSVVCLHEISKTLREKRF 569


>gb|AAG51632.1|AC012193_14 putative 3'-5' exoribonuclease, 3' partial; 3320-1 [Arabidopsis
            thaliana]
          Length = 935

 Score =  456 bits (1174), Expect = e-126
 Identities = 266/590 (45%), Positives = 350/590 (59%), Gaps = 61/590 (10%)
 Frame = +1

Query: 403  DATASSNLVASTSLPPMHIHQ-------PPIL-----------RSCPHP---------NG 501
            +A  +SN VA  S+PPM            P+L           +SCP P         NG
Sbjct: 75   EAMRASN-VAFNSMPPMRAESGYPRRSASPLLSSPEVSKQLLSKSCPDPRACEQSPGMNG 133

Query: 502  SL-NHLDAHTPRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVL 678
             L   ++  + R  F  HWS   V  A++  + F A FRVNAHNR EAYC IDG+P D+L
Sbjct: 134  ELFQQIEGSSQRKIFSSHWSLDAVTEALEKGEAFKALFRVNAHNRNEAYCKIDGVPTDIL 193

Query: 679  ISGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHT---------------KNCTPLDGL 813
            I+G   Q+RAVEGD V ++LD LSLW ++KG    +               K     +G+
Sbjct: 194  INGNVCQSRAVEGDTVVIKLDPLSLWPKMKGFVTESAAKPEGTNSPPEKDDKKARQKNGI 253

Query: 814  VLLKEVEG---------VGDNCK------LKEKVDDCXXXXXXXXXXXXXXXXXXXXXCA 948
             +++  E          +G   K          +D C                     C 
Sbjct: 254  DVVEGFEDGFSKNKSSVIGKGAKNGVTPSSPPSLDSCLGSFCEQKGNCSAVDKL----CG 309

Query: 949  LVSTFPSKRPTGRVVAIIQKSPRRDALVGFLGVSQWRPSGGEGFQKETNQNKTFVSYSNQ 1128
            ++S+FP KRPTG+VVA+++KS  RD++VG L V  W        + +  + K+ +S S+ 
Sbjct: 310  ILSSFPHKRPTGQVVAVVEKSLVRDSIVGLLDVKGWIHYK----ESDPKRCKSPLSLSDD 365

Query: 1129 EFIELIPNDAKFPKMLVCLRDLPEYIKKRLMKSDA---MELVAVRIENWREDSLLPHACV 1299
            E+++L+P D +FPK++V    LP  I+ RL   D     ELVA +I +W E S  P A +
Sbjct: 366  EYVQLMPADPRFPKLIVPFHVLPGSIRARLENLDPNLEAELVAAQIVDWGEGSPFPVAQI 425

Query: 1300 MHSFGRGGEIEPHLAAILFENSICVTEFSPESLSNLPKFPWEVPAEELERRKDLRHLCTL 1479
             H FGRG E+EP + AIL++NS+C ++FSP SL++LP+ PWEVP EE++RRKDLR LC L
Sbjct: 426  THLFGRGSELEPQINAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEEVQRRKDLRDLCVL 485

Query: 1480 TIDPSTATDLDDALSVQRVSDSIFRIGVHIADVSYFVLPDTPLDIEAQTRSTSVYLRHRK 1659
            TIDPSTATDLDDALSVQ +    FR+GVHIADVSYFVLP+T LD EA+ RSTSVYL  RK
Sbjct: 486  TIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEARFRSTSVYLMQRK 545

Query: 1660 IPMLPALLSENIGSLVPGVDRLAYSIMFDCNLAGDVVDRWIGRTVIRSCCKLSYQHAQYI 1839
            I MLP LLSEN+GSL PG DRLA+SI++D N  GDV+DRWIGRT+IRSCCKLSY HAQ I
Sbjct: 546  ISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIRSCCKLSYDHAQDI 605

Query: 1840 IDGLMDVERHDTVVSQFPEVYGQFGKVDVIGSVKILTEISKRLKENRYRD 1989
            IDG  DV  +      +P ++G F   DV  SVK L+EIS  L++ R+R+
Sbjct: 606  IDGKSDVAENG-----WPALHGSFKWCDVTRSVKQLSEISTTLRQKRFRN 650


>ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cucumis sativus]
          Length = 1125

 Score =  446 bits (1147), Expect = e-122
 Identities = 273/606 (45%), Positives = 354/606 (58%), Gaps = 85/606 (14%)
 Frame = +1

Query: 427  VASTSLPPMHIHQPP---------------------ILRSCP-------HPNGSLNH--- 513
            +  +SLPP+HI++                       + +SCP       +   SLN    
Sbjct: 95   IGFSSLPPLHINEQAELSASHNLMNQNHHSSDAGGRVTKSCPEQIASGRYSGISLNQHSP 154

Query: 514  ----LDAHTPRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVLI 681
                 D +T R +F  HWS   VN  +Q   +F A FRVNAHNRLEAYC IDGLPIDVLI
Sbjct: 155  PADVTDNNTQRKYFPSHWSVDDVNEGLQKGGIFKALFRVNAHNRLEAYCKIDGLPIDVLI 214

Query: 682  SGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHTKNCTPLDGLVLLKEVEGVGD-NCKL 858
            +G A+QNRAVEGD+VA++LD  + WT++KG++    N   ++   L  E+    D NCK 
Sbjct: 215  NGIASQNRAVEGDIVAIKLDPFTSWTKMKGTSEAHNNMHSMEDANLPAELTEKNDHNCKG 274

Query: 859  KEKVD----------------DCXXXXXXXXXXXXXXXXXXXXXC---ALVSTFPSK--- 972
            K KVD                 C                     C    L    PS+   
Sbjct: 275  KNKVDADVKSDSFRSTSLPDKRCCSEDKVLDGVACDVLLSNYEQCDINELSVVNPSQAHH 334

Query: 973  --------RPTGRVVAII----------------QKSPRRDALVGFLGVSQWRPSGGEGF 1080
                    +  GR+ A+I                +KS  R+ +VG L V ++  S  E +
Sbjct: 335  SSNQDDVSKAIGRICALINLYPAKRPTGRVVTILEKSRLRENVVGHLNVKKFL-SFQEFY 393

Query: 1081 QKETNQNKTFVSYSNQEFIELIPNDAKFPKMLVCLRDLPEYIKKRLMKSDAM---ELVAV 1251
             KE+ ++    S  N  +++L+PNDA+FP M+V   DLP  IKKRL   D     ELVA 
Sbjct: 394  VKESTKSCLSPS-QNCGYVQLMPNDARFPIMMVLAGDLPNCIKKRLDNGDVTVENELVAA 452

Query: 1252 RIENWREDSLLPHACVMHSFGRGGEIEPHLAAILFENSICVTEFSPESLSNLPKFPWEVP 1431
            RI  W ++S  P A V+H  GRG E+E H+ AILFEN+I   EFS +SLS +P+ PW++P
Sbjct: 453  RIYEWVKESSSPRAHVLHVLGRGNEVESHIDAILFENAIRTCEFSQDSLSCVPQTPWKIP 512

Query: 1432 AEELERRKDLRHLCTLTIDPSTATDLDDALSVQRVSDSIFRIGVHIADVSYFVLPDTPLD 1611
             EEL+ R+D+R+LC  TIDPS+A+DLDDALSVQR+++ IFR+G+HIADVSYFVLPDT LD
Sbjct: 513  PEELQCRRDIRNLCIFTIDPSSASDLDDALSVQRLANGIFRVGIHIADVSYFVLPDTALD 572

Query: 1612 IEAQTRSTSVYLRHRKIPMLPALLSENIGSLVPGVDRLAYSIMFDCNLAGDVVDRWIGRT 1791
             EAQ RSTSVYL  RKIPMLP LLSE+IGSL PGVDRLA+S+  D N  GDV D WI RT
Sbjct: 573  KEAQIRSTSVYLLQRKIPMLPPLLSESIGSLNPGVDRLAFSLFLDINSCGDVKDFWIERT 632

Query: 1792 VIRSCCKLSYQHAQYIIDGLMDVERHDTVVSQFPEVYGQFGKVDVIGSVKILTEISKRLK 1971
            VI  CCKLSY+HAQ IIDGL+D +  +   +  P+++GQF   DVI SVK+L EISK +K
Sbjct: 633  VICCCCKLSYEHAQDIIDGLIDSDSSELFGNNCPQLHGQFTWHDVISSVKLLHEISKTVK 692

Query: 1972 ENRYRD 1989
            E R+R+
Sbjct: 693  EKRFRN 698


>ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vitis vinifera]
          Length = 1131

 Score =  436 bits (1121), Expect = e-119
 Identities = 225/352 (63%), Positives = 273/352 (77%), Gaps = 3/352 (0%)
 Frame = +1

Query: 943  CALVSTFPSKRPTGRVVAIIQKSPRRDALVGFLGVSQWRPSGGEGFQKETNQNKTFVSYS 1122
            CA +++FPSKRPTG VVAII++SPRR A+VGFL V QW  S     +K T  NKT++S S
Sbjct: 346  CAAINSFPSKRPTGSVVAIIERSPRRVAVVGFLSVKQWL-SSRVLHRKGTKMNKTYLSLS 404

Query: 1123 NQEFIELIPNDAKFPKMLVCLRDLPEYIKKRLMKSDA---MELVAVRIENWREDSLLPHA 1293
            + E+I+L P D KFPKM+V ++ L + IKKRL   DA   MELVA +I +W E+S LP A
Sbjct: 405  DSEYIQLTPTDPKFPKMVVPVKGLSDCIKKRLEDGDASMEMELVAAQISDWGEESSLPLA 464

Query: 1294 CVMHSFGRGGEIEPHLAAILFENSICVTEFSPESLSNLPKFPWEVPAEELERRKDLRHLC 1473
             VMH FGRGGEIEP +AAILFEN+I  +EFSPESLS LP  PW+VP EE+ERR+DLR+LC
Sbjct: 465  HVMHIFGRGGEIEPRIAAILFENAIRPSEFSPESLSCLPHIPWKVPQEEIERRRDLRNLC 524

Query: 1474 TLTIDPSTATDLDDALSVQRVSDSIFRIGVHIADVSYFVLPDTPLDIEAQTRSTSVYLRH 1653
              TIDPSTATDLDDALSV+++S   FR+GVHIAD SYFVLPD  LD EAQ+RSTSVYL  
Sbjct: 525  IFTIDPSTATDLDDALSVEKLSGGNFRVGVHIADASYFVLPDGVLDREAQSRSTSVYLLQ 584

Query: 1654 RKIPMLPALLSENIGSLVPGVDRLAYSIMFDCNLAGDVVDRWIGRTVIRSCCKLSYQHAQ 1833
             K+PMLP LLSEN+GSL+PGVDRLA+SI +D NLAGDVVDRWIGRTVI+SCCKLSY+HAQ
Sbjct: 585  HKLPMLPPLLSENLGSLIPGVDRLAFSIFWDINLAGDVVDRWIGRTVIQSCCKLSYEHAQ 644

Query: 1834 YIIDGLMDVERHDTVVSQFPEVYGQFGKVDVIGSVKILTEISKRLKENRYRD 1989
             IIDG+ DVE    + +  P+++G F   +VI S+K L  ISK L+ NR+ D
Sbjct: 645  GIIDGMFDVEGSKILGNDCPQLHGHFKLPEVIRSIKYLYAISKTLRANRFND 696



 Score =  130 bits (326), Expect = 2e-27
 Identities = 78/185 (42%), Positives = 103/185 (55%), Gaps = 36/185 (19%)
 Frame = +1

Query: 427 VASTSLPPMHIHQPPI----------------------LRSCPHPNGSLNHLDAHT---- 528
           VA TSLP MH+++  +                       +SCP P      + + T    
Sbjct: 92  VAFTSLPTMHLNEQALHAEVGSMNNQHIFPSDPSGGMCSKSCPVPIDCEQSIQSFTNKNV 151

Query: 529 ----------PRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVL 678
                      R +F PHWS  +VN A++  +VF A+FRVNA+NRLEAYCTI+G+  DVL
Sbjct: 152 LSPYQDEGCAQRKYFTPHWSTEVVNEALEKGNVFRASFRVNAYNRLEAYCTIEGVKTDVL 211

Query: 679 ISGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHTKNCTPLDGLVLLKEVEGVGDNCKL 858
           ISG A+QNRAVEGD+VAV++D  SLW+R+KGS     N    +   LL +V  VGD+ K 
Sbjct: 212 ISGLASQNRAVEGDIVAVKVDPFSLWSRMKGSTVFPNNAGLTEDHNLLSDVTFVGDSWKG 271

Query: 859 KEKVD 873
           K KVD
Sbjct: 272 KGKVD 276


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