BLASTX nr result
ID: Coptis21_contig00011127
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011127
(1991 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI19050.3| unnamed protein product [Vitis vinifera] 512 e-142
ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|2... 508 e-141
gb|AAG51632.1|AC012193_14 putative 3'-5' exoribonuclease, 3' par... 456 e-126
ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cuc... 446 e-122
ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vit... 436 e-119
>emb|CBI19050.3| unnamed protein product [Vitis vinifera]
Length = 1007
Score = 512 bits (1318), Expect = e-142
Identities = 292/560 (52%), Positives = 358/560 (63%), Gaps = 39/560 (6%)
Frame = +1
Query: 427 VASTSLPPMHIHQPPI----------------------LRSCPHPNGSLNHLDAHT---- 528
VA TSLP MH+++ + +SCP P + + T
Sbjct: 92 VAFTSLPTMHLNEQALHAEVGSMNNQHIFPSDPSGGMCSKSCPVPIDCEQSIQSFTNKNV 151
Query: 529 ----------PRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVL 678
R +F PHWS +VN A++ +VF A+FRVNA+NRLEAYCTI+G+ DVL
Sbjct: 152 LSPYQDEGCAQRKYFTPHWSTEVVNEALEKGNVFRASFRVNAYNRLEAYCTIEGVKTDVL 211
Query: 679 ISGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHTKNCTPLDGLVLLKEVEGVGDNCKL 858
ISG A+QNRAVEGD+VAV++D SLW+R+KGS N E +G N +
Sbjct: 212 ISGLASQNRAVEGDIVAVKVDPFSLWSRMKGSTVFPNNAAENISQ------EPMGHN-HV 264
Query: 859 KEKVDDCXXXXXXXXXXXXXXXXXXXXXCALVSTFPSKRPTGRVVAIIQKSPRRDALVGF 1038
CA +++FPSKRPTG VVAII++SPRR A+VGF
Sbjct: 265 NGHHPPVFGPSHVSCFGERSNMDSLEKICAAINSFPSKRPTGSVVAIIERSPRRVAVVGF 324
Query: 1039 LGVSQWRPSGGEGFQKETNQNKTFVSYSNQEFIELIPNDAKFPKMLVCLRDLPEYIKKRL 1218
L V QW S +K T NKT++S S+ E+I+L P D KFPKM+V ++ L + IKKRL
Sbjct: 325 LSVKQWL-SSRVLHRKGTKMNKTYLSLSDSEYIQLTPTDPKFPKMVVPVKGLSDCIKKRL 383
Query: 1219 MKSDA---MELVAVRIENWREDSLLPHACVMHSFGRGGEIEPHLAAILFENSICVTEFSP 1389
DA MELVA +I +W E+S LP A VMH FGRGGEIEP +AAILFEN+I +EFSP
Sbjct: 384 EDGDASMEMELVAAQISDWGEESSLPLAHVMHIFGRGGEIEPRIAAILFENAIRPSEFSP 443
Query: 1390 ESLSNLPKFPWEVPAEELERRKDLRHLCTLTIDPSTATDLDDALSVQRVSDSIFRIGVHI 1569
ESLS LP PW+VP EE+ERR+DLR+LC TIDPSTATDLDDALSV+++S FR+GVHI
Sbjct: 444 ESLSCLPHIPWKVPQEEIERRRDLRNLCIFTIDPSTATDLDDALSVEKLSGGNFRVGVHI 503
Query: 1570 ADVSYFVLPDTPLDIEAQTRSTSVYLRHRKIPMLPALLSENIGSLVPGVDRLAYSIMFDC 1749
AD SYFVLPD LD EAQ+RSTSVYL K+PMLP LLSEN+GSL+PGVDRLA+SI +D
Sbjct: 504 ADASYFVLPDGVLDREAQSRSTSVYLLQHKLPMLPPLLSENLGSLIPGVDRLAFSIFWDI 563
Query: 1750 NLAGDVVDRWIGRTVIRSCCKLSYQHAQYIIDGLMDVERHDTVVSQFPEVYGQFGKVDVI 1929
NLAGDVVDRWIGRTVI+SCCKLSY+HAQ IIDG+ DVE VI
Sbjct: 564 NLAGDVVDRWIGRTVIQSCCKLSYEHAQGIIDGMFDVE--------------------VI 603
Query: 1930 GSVKILTEISKRLKENRYRD 1989
S+K L ISK L+ NR+ D
Sbjct: 604 RSIKYLYAISKTLRANRFND 623
>ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|222843977|gb|EEE81524.1|
predicted protein [Populus trichocarpa]
Length = 860
Score = 508 bits (1307), Expect = e-141
Identities = 282/568 (49%), Positives = 363/568 (63%), Gaps = 49/568 (8%)
Frame = +1
Query: 427 VASTSLPPMHIHQPP------------ILRSCPHP------NGSL---NHLDAHTPRIHF 543
+A +S+P MH+++ + +SC P +G L + + F
Sbjct: 3 IAYSSMPTMHVNEQQEDLVLSDLDGSMLAKSCTEPIVGGGPHGKLLPFHQFEGQAQSKIF 62
Query: 544 EPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVLISGGAAQNRAVEGDV 723
P+WS VN A++ DVF FRVNAHNRLEAYC I+G+P DVLISG AAQNRA++GDV
Sbjct: 63 APYWSTETVNEALEKGDVFKVLFRVNAHNRLEAYCKIEGVPTDVLISGIAAQNRAMDGDV 122
Query: 724 VAVQLDSLSLWTRLKGSAGHTKNCTPLDG----------------LVLLKEV-------- 831
V +++D LS WT++KGS + N T D LV K +
Sbjct: 123 VVIEVDPLSFWTKMKGSNVPSNNPTAEDSNLHLEANGKCADFGNSLVPQKGIHYDETACA 182
Query: 832 -EGVGDNCKLKEKVDDCXXXXXXXXXXXXXXXXXXXXXCALVSTFPSKRPTGRVVAIIQK 1008
E V DN CA++S +PSKRPTGRVVAI++K
Sbjct: 183 GEVVHDNYVNGYHQSASESSLAVPSTGQDEVSNSVGRICAMLSLYPSKRPTGRVVAIVEK 242
Query: 1009 SPRRDALVGFLGVSQWRPSGGEGFQKETNQNKTFVSYSNQEFIELIPNDAKFPKMLVCLR 1188
SPRRD +VGFL V QW EG ++ +NK+ +S SN+E+IE++P D +FPK++V +
Sbjct: 243 SPRRDVIVGFLNVKQWFYYR-EGCRQNAKKNKSSLSISNREYIEMMPTDPRFPKLMVLVS 301
Query: 1189 DLPEYIKKRLMKSDA---MELVAVRIENWREDSLLPHACVMHSFGRGGEIEPHLAAILFE 1359
LP+ IKKRL DA MELVA +I+NW + S P A V FGRG E+E + AIL E
Sbjct: 302 VLPDCIKKRLENEDATVEMELVAAQIDNWSDKSPFPEAHVSCIFGRGSEMESQINAILHE 361
Query: 1360 NSICVTEFSPESLSNLPKFPWEVPAEELERRKDLRHLCTLTIDPSTATDLDDALSVQRVS 1539
N+IC ++FSPESLS LP WEVP +E+E RKD+R+LC TIDPS+ATDLDDALSVQ++
Sbjct: 362 NAICCSKFSPESLSCLPSNTWEVPKDEIENRKDIRNLCIFTIDPSSATDLDDALSVQKLP 421
Query: 1540 DSIFRIGVHIADVSYFVLPDTPLDIEAQTRSTSVYLRHRKIPMLPALLSENIGSLVPGVD 1719
+ + R+GVHIADVSYFVLPDT LD+EAQ RSTSVY+ RKIPMLP LLSEN+GSL PGVD
Sbjct: 422 NGLVRVGVHIADVSYFVLPDTALDMEAQFRSTSVYMLRRKIPMLPPLLSENLGSLNPGVD 481
Query: 1720 RLAYSIMFDCNLAGDVVDRWIGRTVIRSCCKLSYQHAQYIIDGLMDVERHDTVVSQFPEV 1899
RLA+SI +D N +G+VVDRWI RTVI+SCCKLSY+HAQ I+DG++D E +T P++
Sbjct: 482 RLAFSIFWDFNSSGNVVDRWIDRTVIQSCCKLSYEHAQGIVDGMIDTETCNTFGDSLPQL 541
Query: 1900 YGQFGKVDVIGSVKILTEISKRLKENRY 1983
+G F DVIGSV L EISK L+E R+
Sbjct: 542 HGHFEWADVIGSVVCLHEISKTLREKRF 569
>gb|AAG51632.1|AC012193_14 putative 3'-5' exoribonuclease, 3' partial; 3320-1 [Arabidopsis
thaliana]
Length = 935
Score = 456 bits (1174), Expect = e-126
Identities = 266/590 (45%), Positives = 350/590 (59%), Gaps = 61/590 (10%)
Frame = +1
Query: 403 DATASSNLVASTSLPPMHIHQ-------PPIL-----------RSCPHP---------NG 501
+A +SN VA S+PPM P+L +SCP P NG
Sbjct: 75 EAMRASN-VAFNSMPPMRAESGYPRRSASPLLSSPEVSKQLLSKSCPDPRACEQSPGMNG 133
Query: 502 SL-NHLDAHTPRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVL 678
L ++ + R F HWS V A++ + F A FRVNAHNR EAYC IDG+P D+L
Sbjct: 134 ELFQQIEGSSQRKIFSSHWSLDAVTEALEKGEAFKALFRVNAHNRNEAYCKIDGVPTDIL 193
Query: 679 ISGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHT---------------KNCTPLDGL 813
I+G Q+RAVEGD V ++LD LSLW ++KG + K +G+
Sbjct: 194 INGNVCQSRAVEGDTVVIKLDPLSLWPKMKGFVTESAAKPEGTNSPPEKDDKKARQKNGI 253
Query: 814 VLLKEVEG---------VGDNCK------LKEKVDDCXXXXXXXXXXXXXXXXXXXXXCA 948
+++ E +G K +D C C
Sbjct: 254 DVVEGFEDGFSKNKSSVIGKGAKNGVTPSSPPSLDSCLGSFCEQKGNCSAVDKL----CG 309
Query: 949 LVSTFPSKRPTGRVVAIIQKSPRRDALVGFLGVSQWRPSGGEGFQKETNQNKTFVSYSNQ 1128
++S+FP KRPTG+VVA+++KS RD++VG L V W + + + K+ +S S+
Sbjct: 310 ILSSFPHKRPTGQVVAVVEKSLVRDSIVGLLDVKGWIHYK----ESDPKRCKSPLSLSDD 365
Query: 1129 EFIELIPNDAKFPKMLVCLRDLPEYIKKRLMKSDA---MELVAVRIENWREDSLLPHACV 1299
E+++L+P D +FPK++V LP I+ RL D ELVA +I +W E S P A +
Sbjct: 366 EYVQLMPADPRFPKLIVPFHVLPGSIRARLENLDPNLEAELVAAQIVDWGEGSPFPVAQI 425
Query: 1300 MHSFGRGGEIEPHLAAILFENSICVTEFSPESLSNLPKFPWEVPAEELERRKDLRHLCTL 1479
H FGRG E+EP + AIL++NS+C ++FSP SL++LP+ PWEVP EE++RRKDLR LC L
Sbjct: 426 THLFGRGSELEPQINAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEEVQRRKDLRDLCVL 485
Query: 1480 TIDPSTATDLDDALSVQRVSDSIFRIGVHIADVSYFVLPDTPLDIEAQTRSTSVYLRHRK 1659
TIDPSTATDLDDALSVQ + FR+GVHIADVSYFVLP+T LD EA+ RSTSVYL RK
Sbjct: 486 TIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEARFRSTSVYLMQRK 545
Query: 1660 IPMLPALLSENIGSLVPGVDRLAYSIMFDCNLAGDVVDRWIGRTVIRSCCKLSYQHAQYI 1839
I MLP LLSEN+GSL PG DRLA+SI++D N GDV+DRWIGRT+IRSCCKLSY HAQ I
Sbjct: 546 ISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIRSCCKLSYDHAQDI 605
Query: 1840 IDGLMDVERHDTVVSQFPEVYGQFGKVDVIGSVKILTEISKRLKENRYRD 1989
IDG DV + +P ++G F DV SVK L+EIS L++ R+R+
Sbjct: 606 IDGKSDVAENG-----WPALHGSFKWCDVTRSVKQLSEISTTLRQKRFRN 650
>ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cucumis sativus]
Length = 1125
Score = 446 bits (1147), Expect = e-122
Identities = 273/606 (45%), Positives = 354/606 (58%), Gaps = 85/606 (14%)
Frame = +1
Query: 427 VASTSLPPMHIHQPP---------------------ILRSCP-------HPNGSLNH--- 513
+ +SLPP+HI++ + +SCP + SLN
Sbjct: 95 IGFSSLPPLHINEQAELSASHNLMNQNHHSSDAGGRVTKSCPEQIASGRYSGISLNQHSP 154
Query: 514 ----LDAHTPRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVLI 681
D +T R +F HWS VN +Q +F A FRVNAHNRLEAYC IDGLPIDVLI
Sbjct: 155 PADVTDNNTQRKYFPSHWSVDDVNEGLQKGGIFKALFRVNAHNRLEAYCKIDGLPIDVLI 214
Query: 682 SGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHTKNCTPLDGLVLLKEVEGVGD-NCKL 858
+G A+QNRAVEGD+VA++LD + WT++KG++ N ++ L E+ D NCK
Sbjct: 215 NGIASQNRAVEGDIVAIKLDPFTSWTKMKGTSEAHNNMHSMEDANLPAELTEKNDHNCKG 274
Query: 859 KEKVD----------------DCXXXXXXXXXXXXXXXXXXXXXC---ALVSTFPSK--- 972
K KVD C C L PS+
Sbjct: 275 KNKVDADVKSDSFRSTSLPDKRCCSEDKVLDGVACDVLLSNYEQCDINELSVVNPSQAHH 334
Query: 973 --------RPTGRVVAII----------------QKSPRRDALVGFLGVSQWRPSGGEGF 1080
+ GR+ A+I +KS R+ +VG L V ++ S E +
Sbjct: 335 SSNQDDVSKAIGRICALINLYPAKRPTGRVVTILEKSRLRENVVGHLNVKKFL-SFQEFY 393
Query: 1081 QKETNQNKTFVSYSNQEFIELIPNDAKFPKMLVCLRDLPEYIKKRLMKSDAM---ELVAV 1251
KE+ ++ S N +++L+PNDA+FP M+V DLP IKKRL D ELVA
Sbjct: 394 VKESTKSCLSPS-QNCGYVQLMPNDARFPIMMVLAGDLPNCIKKRLDNGDVTVENELVAA 452
Query: 1252 RIENWREDSLLPHACVMHSFGRGGEIEPHLAAILFENSICVTEFSPESLSNLPKFPWEVP 1431
RI W ++S P A V+H GRG E+E H+ AILFEN+I EFS +SLS +P+ PW++P
Sbjct: 453 RIYEWVKESSSPRAHVLHVLGRGNEVESHIDAILFENAIRTCEFSQDSLSCVPQTPWKIP 512
Query: 1432 AEELERRKDLRHLCTLTIDPSTATDLDDALSVQRVSDSIFRIGVHIADVSYFVLPDTPLD 1611
EEL+ R+D+R+LC TIDPS+A+DLDDALSVQR+++ IFR+G+HIADVSYFVLPDT LD
Sbjct: 513 PEELQCRRDIRNLCIFTIDPSSASDLDDALSVQRLANGIFRVGIHIADVSYFVLPDTALD 572
Query: 1612 IEAQTRSTSVYLRHRKIPMLPALLSENIGSLVPGVDRLAYSIMFDCNLAGDVVDRWIGRT 1791
EAQ RSTSVYL RKIPMLP LLSE+IGSL PGVDRLA+S+ D N GDV D WI RT
Sbjct: 573 KEAQIRSTSVYLLQRKIPMLPPLLSESIGSLNPGVDRLAFSLFLDINSCGDVKDFWIERT 632
Query: 1792 VIRSCCKLSYQHAQYIIDGLMDVERHDTVVSQFPEVYGQFGKVDVIGSVKILTEISKRLK 1971
VI CCKLSY+HAQ IIDGL+D + + + P+++GQF DVI SVK+L EISK +K
Sbjct: 633 VICCCCKLSYEHAQDIIDGLIDSDSSELFGNNCPQLHGQFTWHDVISSVKLLHEISKTVK 692
Query: 1972 ENRYRD 1989
E R+R+
Sbjct: 693 EKRFRN 698
>ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vitis vinifera]
Length = 1131
Score = 436 bits (1121), Expect = e-119
Identities = 225/352 (63%), Positives = 273/352 (77%), Gaps = 3/352 (0%)
Frame = +1
Query: 943 CALVSTFPSKRPTGRVVAIIQKSPRRDALVGFLGVSQWRPSGGEGFQKETNQNKTFVSYS 1122
CA +++FPSKRPTG VVAII++SPRR A+VGFL V QW S +K T NKT++S S
Sbjct: 346 CAAINSFPSKRPTGSVVAIIERSPRRVAVVGFLSVKQWL-SSRVLHRKGTKMNKTYLSLS 404
Query: 1123 NQEFIELIPNDAKFPKMLVCLRDLPEYIKKRLMKSDA---MELVAVRIENWREDSLLPHA 1293
+ E+I+L P D KFPKM+V ++ L + IKKRL DA MELVA +I +W E+S LP A
Sbjct: 405 DSEYIQLTPTDPKFPKMVVPVKGLSDCIKKRLEDGDASMEMELVAAQISDWGEESSLPLA 464
Query: 1294 CVMHSFGRGGEIEPHLAAILFENSICVTEFSPESLSNLPKFPWEVPAEELERRKDLRHLC 1473
VMH FGRGGEIEP +AAILFEN+I +EFSPESLS LP PW+VP EE+ERR+DLR+LC
Sbjct: 465 HVMHIFGRGGEIEPRIAAILFENAIRPSEFSPESLSCLPHIPWKVPQEEIERRRDLRNLC 524
Query: 1474 TLTIDPSTATDLDDALSVQRVSDSIFRIGVHIADVSYFVLPDTPLDIEAQTRSTSVYLRH 1653
TIDPSTATDLDDALSV+++S FR+GVHIAD SYFVLPD LD EAQ+RSTSVYL
Sbjct: 525 IFTIDPSTATDLDDALSVEKLSGGNFRVGVHIADASYFVLPDGVLDREAQSRSTSVYLLQ 584
Query: 1654 RKIPMLPALLSENIGSLVPGVDRLAYSIMFDCNLAGDVVDRWIGRTVIRSCCKLSYQHAQ 1833
K+PMLP LLSEN+GSL+PGVDRLA+SI +D NLAGDVVDRWIGRTVI+SCCKLSY+HAQ
Sbjct: 585 HKLPMLPPLLSENLGSLIPGVDRLAFSIFWDINLAGDVVDRWIGRTVIQSCCKLSYEHAQ 644
Query: 1834 YIIDGLMDVERHDTVVSQFPEVYGQFGKVDVIGSVKILTEISKRLKENRYRD 1989
IIDG+ DVE + + P+++G F +VI S+K L ISK L+ NR+ D
Sbjct: 645 GIIDGMFDVEGSKILGNDCPQLHGHFKLPEVIRSIKYLYAISKTLRANRFND 696
Score = 130 bits (326), Expect = 2e-27
Identities = 78/185 (42%), Positives = 103/185 (55%), Gaps = 36/185 (19%)
Frame = +1
Query: 427 VASTSLPPMHIHQPPI----------------------LRSCPHPNGSLNHLDAHT---- 528
VA TSLP MH+++ + +SCP P + + T
Sbjct: 92 VAFTSLPTMHLNEQALHAEVGSMNNQHIFPSDPSGGMCSKSCPVPIDCEQSIQSFTNKNV 151
Query: 529 ----------PRIHFEPHWSPHLVNAAMQNADVFVAAFRVNAHNRLEAYCTIDGLPIDVL 678
R +F PHWS +VN A++ +VF A+FRVNA+NRLEAYCTI+G+ DVL
Sbjct: 152 LSPYQDEGCAQRKYFTPHWSTEVVNEALEKGNVFRASFRVNAYNRLEAYCTIEGVKTDVL 211
Query: 679 ISGGAAQNRAVEGDVVAVQLDSLSLWTRLKGSAGHTKNCTPLDGLVLLKEVEGVGDNCKL 858
ISG A+QNRAVEGD+VAV++D SLW+R+KGS N + LL +V VGD+ K
Sbjct: 212 ISGLASQNRAVEGDIVAVKVDPFSLWSRMKGSTVFPNNAGLTEDHNLLSDVTFVGDSWKG 271
Query: 859 KEKVD 873
K KVD
Sbjct: 272 KGKVD 276