BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011119
         (1641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303222.1| predicted protein [Populus trichocarpa] gi|2...   627   e-177
ref|XP_002519926.1| pentatricopeptide repeat-containing protein,...   620   e-175
ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containi...   600   e-169
ref|XP_003629008.1| Pentatricopeptide repeat-containing protein ...   573   e-161
ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containi...   556   e-156

>ref|XP_002303222.1| predicted protein [Populus trichocarpa] gi|222840654|gb|EEE78201.1|
            predicted protein [Populus trichocarpa]
          Length = 472

 Score =  627 bits (1618), Expect = e-177
 Identities = 298/446 (66%), Positives = 368/446 (82%)
 Frame = -2

Query: 1529 MNPRVRVLCDIVATVPAAEIETALARCGVSPLPEYAEEVLKHSYEFPAAAVKFFKWTGSL 1350
            ++P  R+L +I+    + +IE+AL+  G+ P  +   EVLK  +E   +A+ FF+W G  
Sbjct: 26   ISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLKLCHENATSAIAFFRWAGRT 85

Query: 1349 NRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFGSYCIAGKFSEAVM 1170
            ++ T Y+WNLMVDLLGKN ++E MWDA+R+MKQE++LSMATF SVFGSYC+AGKF+EA+M
Sbjct: 86   HKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSMATFVSVFGSYCMAGKFNEAIM 145

Query: 1169 SFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKTKIAPDADTFAILLEGWE 990
            SF V+D+YG+QQDV+ VNSLL+AIC EENQT KALEFF+KIK KI P+ADTFAILLEGWE
Sbjct: 146  SFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKIKLKIPPNADTFAILLEGWE 205

Query: 989  KEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIKFLHVMKGKNCLPG 810
            KEG+ AKAK TFGEMVI+VGWSP+NMSAYD+FLTTLVRG+QADEA+KFL VMKGKNCLPG
Sbjct: 206  KEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQADEAVKFLRVMKGKNCLPG 265

Query: 809  MKFFSNALDILVKQNDSSQAVPLWEILVGSGLLPSLVMYNAMIGLLCNNSDFDNALRLLD 630
            +KFFSNALD+LVKQNDS+ A+PLW+I+VGSGLLP+L+MYNAMIGL CNN+D DNA RLLD
Sbjct: 266  LKFFSNALDMLVKQNDSTHAIPLWDIMVGSGLLPNLIMYNAMIGLHCNNNDVDNAFRLLD 325

Query: 629  EMAFHGAFPDSLTYNMIFQCLIKNKKVRQAASFFNEMMKNEQPPTHANCAAAIKMFFDAD 450
            EM F+GAFPD LT+N+IF+CLIKNKKV +   FF EM+KNE PPTH +C+AAI    D  
Sbjct: 326  EMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIKNESPPTHFDCSAAIMTLIDGG 385

Query: 449  DPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDMLDRRINIYESTMK 270
            DPE A+E+W  ++ N V P D S+N LLIG C LGR+S+VR+F +DMLDRRINIYESTMK
Sbjct: 386  DPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRMSQVRRFAEDMLDRRINIYESTMK 445

Query: 269  KLKNAFYKKGRSGEDIYYHLSKKWKA 192
            KLK++F K GR G D Y  L ++WKA
Sbjct: 446  KLKDSFDKTGRHGRDKYDCLIRRWKA 471


>ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540972|gb|EEF42530.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 481

 Score =  620 bits (1598), Expect = e-175
 Identities = 300/456 (65%), Positives = 365/456 (80%)
 Frame = -2

Query: 1559 HPSYIEATPTMNPRVRVLCDIVATVPAAEIETALARCGVSPLPEYAEEVLKHSYEFPAAA 1380
            H + ++    ++   R L DI+  V   ++E+AL+  G++   +   EVLK SY  PA+A
Sbjct: 25   HSNGVDIDIDISQSARTLSDILTRVSPHDMESALSSTGINLTCDIIHEVLKLSYSNPASA 84

Query: 1379 VKFFKWTGSLNRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFGSYC 1200
            V+FF+W G    HT YSWNLMVDLLGKN LFE MWDAIRSMKQENVLSMATFASVFGSYC
Sbjct: 85   VEFFRWAGRSGTHTPYSWNLMVDLLGKNQLFEAMWDAIRSMKQENVLSMATFASVFGSYC 144

Query: 1199 IAGKFSEAVMSFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKTKIAPDAD 1020
             AG FSEA+MSFD++D+YGIQQDVIAVNSLLSAIC E+NQT KA+EFF++IK KI PD D
Sbjct: 145  KAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSAICNEDNQTIKAVEFFDRIKLKIPPDGD 204

Query: 1019 TFAILLEGWEKEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIKFLH 840
            T+AILLEGWEKEGNAAKAKN FGEMVI VGWSP+NM AY+AFL  LVR +Q D+A  FL 
Sbjct: 205  TYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSPENMPAYNAFLNLLVRESQTDDAFDFLR 264

Query: 839  VMKGKNCLPGMKFFSNALDILVKQNDSSQAVPLWEILVGSGLLPSLVMYNAMIGLLCNNS 660
            +MK K CLPG+KF+S+ALD+L+K+ND   AVP+W+I+V +GL+P+L+MYN+MIGLLCNN+
Sbjct: 265  LMKEKGCLPGLKFYSDALDMLLKRNDVLHAVPMWDIMVDTGLMPNLLMYNSMIGLLCNNN 324

Query: 659  DFDNALRLLDEMAFHGAFPDSLTYNMIFQCLIKNKKVRQAASFFNEMMKNEQPPTHANCA 480
            D DNA RL D+M FHGAFPD LTY MIF+CL+KNKKV QAASFF+EM+KNE PPTH +CA
Sbjct: 325  DIDNAFRLFDDMVFHGAFPDFLTYKMIFRCLVKNKKVSQAASFFHEMIKNENPPTHLDCA 384

Query: 479  AAIKMFFDADDPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDMLDR 300
            AAI MF   DDPE A+E+W  M+ +   P D+S+N LL+GL  LGRLSEV +F +DMLDR
Sbjct: 385  AAITMFMGGDDPEMAIEIWNYMVDDQELPLDESANALLVGLGNLGRLSEVSRFAEDMLDR 444

Query: 299  RINIYESTMKKLKNAFYKKGRSGEDIYYHLSKKWKA 192
            RINI+ESTM KLK +FYK+GRS  D +  LS+KWKA
Sbjct: 445  RINIHESTMAKLKASFYKEGRSSRDRFDSLSRKWKA 480


>ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Glycine max]
          Length = 488

 Score =  600 bits (1547), Expect = e-169
 Identities = 285/459 (62%), Positives = 357/459 (77%)
 Frame = -2

Query: 1568 PQNHPSYIEATPTMNPRVRVLCDIVATVPAAEIETALARCGVSPLPEYAEEVLKHSYEFP 1389
            P   PS+++A P ++   R LCDI+      +IE+AL+  G+ P  E   EVL+ SY +P
Sbjct: 27   PNQFPSHLDA-PNVSSTARALCDILTRSSPQDIESALSSSGIVPEEECTNEVLRLSYNYP 85

Query: 1388 AAAVKFFKWTGSLNRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFG 1209
            ++AVKFF+W G   +H  ++WNLMVDLLGKN LFE MWDA+RSMKQE  LS++TFASVF 
Sbjct: 86   SSAVKFFRWAGRGKKHPVHTWNLMVDLLGKNQLFEPMWDAVRSMKQEQKLSLSTFASVFQ 145

Query: 1208 SYCIAGKFSEAVMSFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKTKIAP 1029
            SYC A +F+EAVMSFDV+DRYG++QDV+AVNSLLSAIC E+NQT   LEFFE IK K+ P
Sbjct: 146  SYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSEDNQTSFGLEFFEGIKAKVPP 205

Query: 1028 DADTFAILLEGWEKEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIK 849
            D DTFAILLEGWEKEGNAAKAK TFG+MV  +GW+  N++AYDAFL TL+R    D+ ++
Sbjct: 206  DGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNKDNVAAYDAFLMTLLRAGLMDDVVR 265

Query: 848  FLHVMKGKNCLPGMKFFSNALDILVKQNDSSQAVPLWEILVGSGLLPSLVMYNAMIGLLC 669
            FL VMK  +C PG+KFF+ ALD LVKQND+  AVP+W+++V   L+P+L+MYNAMIGLLC
Sbjct: 266  FLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMVSGELVPNLIMYNAMIGLLC 325

Query: 668  NNSDFDNALRLLDEMAFHGAFPDSLTYNMIFQCLIKNKKVRQAASFFNEMMKNEQPPTHA 489
            NN+  D+A RLLDEMAFHGAFPDSLTYNMIF+CL+KNKK R+   FF EM+KNE PPT +
Sbjct: 326  NNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKKARETERFFAEMVKNEWPPTGS 385

Query: 488  NCAAAIKMFFDADDPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDM 309
            NCAAAI M FD DDPE A E+W  ++ N V P D+S+N LLIGLC + R +EV++F +D+
Sbjct: 386  NCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPLDESANALLIGLCNMSRFTEVKRFAEDI 445

Query: 308  LDRRINIYESTMKKLKNAFYKKGRSGEDIYYHLSKKWKA 192
            LDRRINIY+STM  LK+AFYK+GRS  D Y  L ++WKA
Sbjct: 446  LDRRINIYQSTMSILKDAFYKEGRSARDRYDSLYRRWKA 484


>ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523030|gb|AET03484.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  573 bits (1476), Expect = e-161
 Identities = 278/466 (59%), Positives = 357/466 (76%), Gaps = 7/466 (1%)
 Frame = -2

Query: 1568 PQNHPSYIEATPTMNPRVRVLCDIVATVPAAEIETALARCGVSPLPEYAEEVLKHSYEFP 1389
            P   PS+++ TP ++   R LC+++      +I+ AL+  G+ P  E   EVLK SY +P
Sbjct: 38   PNEFPSHLD-TPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKLSYNYP 96

Query: 1388 AAAVKFFKWTGSLNRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFG 1209
            ++A+KFF+W G L +H+ ++WNLMVDLLG+N LFE MWDA+R+MKQE VLS+ TF SVF 
Sbjct: 97   SSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQ 156

Query: 1208 SYCIAGKFSEAVMSFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKT---- 1041
            SYC+AG+ +EAVMSFDV+D+Y I ++V+AVNSLLSAICREENQT   +EF EK  T    
Sbjct: 157  SYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLEKKVTGKDE 216

Query: 1040 -KIAPDADTFAILLEGWEKEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQA 864
             KI  D D++AILLEGWEKEGNA KAK TFGEMVIRVGWS  N++AYDAFL TL+R  Q 
Sbjct: 217  GKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMTLLRALQF 276

Query: 863  DEAIKFLHVMKGKNCLPGMKFFSNALDILVKQNDSSQAVPLWEILVGSGLLPSLVMYNAM 684
            DE + FL VMK  +C PG+KFF+NALD+LVK+ND++ A+PLW+++V SGLLP+L+MYNAM
Sbjct: 277  DEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVSGLLPNLIMYNAM 336

Query: 683  IGLLCNNSDFDNALRLLDEMAFHGAFPDSLTYNMIFQCLIKNKKVRQAASFFNEMMKNEQ 504
            IGLLCNN + D+A RLLDEM  HGAFPDSLTYNMIF+CL+KNKKVR+   FF EM+KNE 
Sbjct: 337  IGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERFFAEMIKNEW 396

Query: 503  PPTHANCAAAIKMFFDADDPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRK 324
             PT +NCA AI+M F+ DDP+ A+E+W  M+   V   D S+N +LIGLC L RLSEVR+
Sbjct: 397  LPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCKLKRLSEVRR 456

Query: 323  FFDDMLDRRINIYESTMKKLKNAFYKKGR--SGEDIYYHLSKKWKA 192
            F ++MLD+RI+IY+STM KLK AFYK+ R  S  D +  + ++WKA
Sbjct: 457  FAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWKA 502


>ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Vitis vinifera]
            gi|296085476|emb|CBI29208.3| unnamed protein product
            [Vitis vinifera]
          Length = 464

 Score =  556 bits (1433), Expect = e-156
 Identities = 265/445 (59%), Positives = 334/445 (75%)
 Frame = -2

Query: 1529 MNPRVRVLCDIVATVPAAEIETALARCGVSPLPEYAEEVLKHSYEFPAAAVKFFKWTGSL 1350
            ++P  + L  I++      +  AL+   + P P+  ++VL+ SY   +AAV+FF+W G  
Sbjct: 13   ISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLT 72

Query: 1349 NRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFGSYCIAGKFSEAVM 1170
             +H+ +SWNL+VDLLGKN  FE MWDAIRSM+ E  LS++ F SVFGSYC  G+ +EA+M
Sbjct: 73   RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 1169 SFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKTKIAPDADTFAILLEGWE 990
            SF+V+DRYGI  DV A+N+LLSAIC E   T  ALEFFEKIK KI PD DTF ILLEGWE
Sbjct: 133  SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 989  KEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIKFLHVMKGKNCLPG 810
            +EGN  KAK+TFGEMV+R+GWSPQNM AY++ L TLVRG + +EAIKFL VMKGK CLPG
Sbjct: 193  REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 809  MKFFSNALDILVKQNDSSQAVPLWEILVGSGLLPSLVMYNAMIGLLCNNSDFDNALRLLD 630
            +KFFSNALD+L+KQNDS+ A+ LW+I++  G +P+L+MYN +IG+LCN  D DNA R LD
Sbjct: 253  LKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLD 312

Query: 629  EMAFHGAFPDSLTYNMIFQCLIKNKKVRQAASFFNEMMKNEQPPTHANCAAAIKMFFDAD 450
            EM F+G F DS TYNMIFQCL+K+KKV +A  FF EM+KNE PP  +NCAAAI M FD D
Sbjct: 313  EMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGD 372

Query: 449  DPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDMLDRRINIYESTMK 270
            DPE A+E+W  M+ N + P D+S+N LLIGLC L R S+ R+F +DMLD +I I+ESTM+
Sbjct: 373  DPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTME 432

Query: 269  KLKNAFYKKGRSGEDIYYHLSKKWK 195
            KLKNA YK GRS  D    L K+WK
Sbjct: 433  KLKNARYKDGRSARDTCDSLWKRWK 457