BLASTX nr result

ID: Coptis21_contig00010993 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010993
         (1484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|2...   125   3e-26
ref|XP_003588676.1| F-box/FBD/LRR-repeat protein [Medicago trunc...   113   1e-22
ref|XP_003589011.1| F-box/FBD/LRR-repeat protein [Medicago trunc...   102   3e-19
ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|2...    99   2e-18
ref|XP_003588677.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    98   6e-18

>ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|222859667|gb|EEE97214.1|
            predicted protein [Populus trichocarpa]
          Length = 460

 Score =  125 bits (314), Expect = 3e-26
 Identities = 130/441 (29%), Positives = 209/441 (47%), Gaps = 23/441 (5%)
 Frame = -3

Query: 1392 AIKTSSLSKKWLNVCTSLTNIEFDQVKFERWSRGKRQFKDFVNQTLVLHGGLDIDKFSIY 1213
            A++TS LSKKWL++  S TN+ F  +K    S  ++ F DFV++ L L G  +I +F + 
Sbjct: 48   AVRTSILSKKWLHLWKSTTNLTFFGLK----SPKRKLFMDFVDRVLALRGPSNIVQFYLS 103

Query: 1212 IDIGGISMSNVNSWIYFAVNHNVKEV--DIAGYYGYFEKLPCCLFTCGTLSVLTLE--YV 1045
             ++     S V +WI  AVN NVK++  ++  +   F  LP CLF C TL+ L +   Y+
Sbjct: 104  CEVKD-DPSRVGTWISAAVNRNVKDLYLELRDFEASFV-LPHCLFNCETLTELEINMPYI 161

Query: 1044 KLELPTVVGLPKLKYLKIKFGRFFDENSTAQLFSSCPLLEELVISNCCFEDMNVNCIVEI 865
             L+LP+ + L  LK L +    F D++ST QLFS  P L EL I  C + ++     V I
Sbjct: 162  -LKLPSSISLSCLKILNLYEVIFTDDHSTQQLFS-LPNLVELEIHECNWMNL---VAVSI 216

Query: 864  SSPSLKSLTVLHDRLVKSFYLPPVKISTSNL--CNIRYYGN-----------PPEICLET 724
            S+P L+SL + H+         P + S ++L  C++R +G              + CL  
Sbjct: 217  SAPKLQSLDI-HE---------PCQSSPASLGGCHVRIFGTHLADFTIIGTLSNDYCLYE 266

Query: 723  LSSLSNVDFEFTS---PLVT--RARAILMGLQNVVRMVLRGFFIELLSRNEGSLACLPTS 559
             S +      F++   P  T  RA  +L G+ +   + L    +++L  +   L   P  
Sbjct: 267  SSVVETCISIFSAADKPRQTAYRASKLLEGISSAQSLCLTTNVVDVLD-DAPELLAFPLE 325

Query: 558  CFSLEYLQLDVKPSKEQVQVVILLLRNYPNLKHLRI-SVKEPTRRLNXXXXXXXXXXXXX 382
              +L  L  + + S         ++ N P+L  L+   V  P    N             
Sbjct: 326  FRNLTSLLFESEESNLHSDGFWHIIYNSPHLIALQFYGVSMPKVPSNCREDWTLDP---- 381

Query: 381  XXGSSMDILYHLKTVDIESFGGSKIELNLVRYLLKNANIVEKLNIIYSGKNGKKDDVSRR 202
               S    L  LK + +  FGG + EL+ V +LLKNA  +E ++IIYSG   +   V + 
Sbjct: 382  ---SPPCFLSCLKFIQVGRFGGDEKELDAVGFLLKNATALESMDIIYSGSARRDQGVDKT 438

Query: 201  LRINEEISSFTKASLSAEISF 139
              I++++ +  + S    I+F
Sbjct: 439  NEIHQQLLALPRWSEIGNINF 459


>ref|XP_003588676.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
            gi|355477724|gb|AES58927.1| F-box/FBD/LRR-repeat protein
            [Medicago truncatula]
          Length = 428

 Score =  113 bits (282), Expect = 1e-22
 Identities = 111/432 (25%), Positives = 196/432 (45%), Gaps = 13/432 (3%)
 Frame = -3

Query: 1395 DAIKTSSLSKKWLNVCTSLTNIEFDQVKFERWSRGKRQFKDF-------VNQTLVLHGGL 1237
            +A++TS LS KW     ++ N+ FD+      S+    F D        ++Q L+L+ G 
Sbjct: 28   EAVRTSVLSNKWRYKWATIPNLVFDKQCVSATSKCSELFLDMEGKLMEIIDQVLLLYSG- 86

Query: 1236 DIDKFSIY-IDIGGISMSNVNSWIYFAVNHNVKEVDIAGYYGYFEKLPCCLFTCGTLSVL 1060
             I+KF I    +  IS + ++ WI+     ++KE+ +        K+P CLF+C +L  L
Sbjct: 87   PINKFQISRCGVNLISETALDRWIFHLTKRSIKELVLQISERKLYKIPWCLFSCQSLHHL 146

Query: 1059 TLEYVKLELP-TVVGLPKLKYLK---IKFGRFFDENSTAQLFSSCPLLEELVISNCCFED 892
            TL Y  L+ P T+ GL  LK L    +   ++  EN    L SSCPLLE L ++     +
Sbjct: 147  TLYYCLLKPPSTIEGLKNLKSLDLDHVSMSQYAFEN----LISSCPLLENLTLT-----E 197

Query: 891  MNVNCIVEISSPSLKSLTVLHDRLVKSFYLPPVKISTSNLCNIRYYGNPPEICLETLSSL 712
            ++    + I +P+LK L +               IS  N   + Y      + L + S+ 
Sbjct: 198  LDGFTQINIHAPNLKVLDICGKF---------EDISFDNTFQLDYVFVDLSLYLNSESNQ 248

Query: 711  SNVDFEFTSPLVTRARAILMGLQNVVRMVLRGFFIELLSRNEGSLACLPTSCFSLEYLQL 532
            S +    ++ L   A      L ++  +V+ G+F++ L+     +  LPT C +L YL  
Sbjct: 249  SRLHGSPSNLLNFFAH-----LHHIHGLVINGYFLKYLAAGAVPVK-LPTPCINLTYLWF 302

Query: 531  DVK-PSKEQVQVVILLLRNYPNLKHLRISVKEPTRRLNXXXXXXXXXXXXXXXGSSMDIL 355
             +     +++   + + R+ PNLK L I  K   + +                     +L
Sbjct: 303  SINFYDFKEISTALCVFRSSPNLKELNIFAKHEKKTI----VLAPAFFCWEDIFLEPSML 358

Query: 354  YHLKTVDIESFGGSKIELNLVRYLLKNANIVEKLNIIYSGKNGKKDDVSRRLRINEEISS 175
              ++ V IE   G K EL+ +R+LL ++ ++EK+ +        K + +   ++  E+  
Sbjct: 359  TRVRHVGIEGISGIKSELDFMRFLLLHSPVLEKMRV--------KPNFNVGSKLMSELLR 410

Query: 174  FTKASLSAEISF 139
            F +AS  AE+ +
Sbjct: 411  FKRASAQAEVVY 422


>ref|XP_003589011.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
            gi|355478059|gb|AES59262.1| F-box/FBD/LRR-repeat protein
            [Medicago truncatula]
          Length = 528

 Score =  102 bits (254), Expect = 3e-19
 Identities = 106/396 (26%), Positives = 187/396 (47%), Gaps = 15/396 (3%)
 Frame = -3

Query: 1395 DAIKTSSLSKKWLNVCTSLTNIEFDQ--VKFERWSRGK------RQFKDFVNQTLVLHGG 1240
            DA++TS LS+ W     +L N+ FD   V     + G        +F   V+  L++H G
Sbjct: 36   DAVRTSVLSRNWRKKWYTLPNLVFDTKLVPVPAATSGDPLAIIDNKFLQIVDHVLLVHSG 95

Query: 1239 -LDIDKFSIYIDIGGIS--MSNVNSWIYFAVNHNVKEVDIAGYYGYFEKLPCCLFTCGTL 1069
             +++ KFS   D+ G    ++N++ WI   +  ++KE+ +  +   + KLP CLF+C +L
Sbjct: 96   PINMFKFSNVDDLMGEDSLVTNIDRWILHLIGRSIKELVLEVWIDDYYKLPWCLFSCQSL 155

Query: 1068 SVLTLEYVKLELPTVV-GLPKLKYLKIKFGRFFDENSTAQLFSSCPLLEELVISNCCFED 892
              L L    L+ PT+  G   LK L +       +++     S CPLLE+L +    F  
Sbjct: 156  HSLKLNGCLLKPPTMFEGFRNLKSLDLCLVNIV-QDAFENFISRCPLLEKLRLRE--FYG 212

Query: 891  MNVNCIVEISSPSLKSLTVLHDRLVKSFYLPPVKISTSNLCNIRYYGNPPEICLETLSSL 712
            +     + I +P+LK   ++ +  V +F       +T  L  I  Y      CLE L+S 
Sbjct: 213  LTQ---INIHAPNLKFFEIVGEFEVVTFG------NTFQLTTIVIYS-----CLE-LTSN 257

Query: 711  SNVDFEFTSP-LVTRARAILMGLQNVVRMVLRGFFIELLSRNEGSLACLPTSCFSLEYLQ 535
            SN   +  SP   +          ++  + + GFF++ L+     +  LPT C +L +L 
Sbjct: 258  SN---QSRSPGCSSNLLKFFDHRPHIQSLEIDGFFLKYLAAGVLPVK-LPTPCINLSFLS 313

Query: 534  LDVK-PSKEQVQVVILLLRNYPNLKHLRISVKEPTRRLNXXXXXXXXXXXXXXXGSSMDI 358
            L +   + E++   + + R+ PNL+ L+IS      R +                SS  +
Sbjct: 314  LTINFDNMEEISAALCVFRSSPNLQKLKIS----ALRAHVATVPLTPATYCWEDISSRLV 369

Query: 357  L-YHLKTVDIESFGGSKIELNLVRYLLKNANIVEKL 253
            + + ++ V I+   G++ ELNL+R+LL  + ++EK+
Sbjct: 370  MPFRVRHVTIDGISGTQSELNLIRFLLLYSLVLEKM 405


>ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|222859666|gb|EEE97213.1|
            predicted protein [Populus trichocarpa]
          Length = 420

 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 93/306 (30%), Positives = 152/306 (49%), Gaps = 14/306 (4%)
 Frame = -3

Query: 1395 DAIKTSSLSKKWLNVCTSLTNIEFDQVKFERWSRGKRQ-FKDFVNQTLVLHGGLDIDKFS 1219
            DA++TS LS+KW ++  SL+N+EF Q  F    + KR+ F + V + L+L    +I+KF+
Sbjct: 59   DAVRTSILSRKWEHLWKSLSNLEFHQCYF----KAKRKIFMNSVERVLLLRDSSNIEKFT 114

Query: 1218 IYIDIGGISMSNVNSWIYFAVNHNVKEVDIAGYYGYFEK---LPCCLFTCGTLSVLTL-E 1051
            +   I     +   +W+  AVN NVKE+ +  Y G   +    P CLFTC TL+ L +  
Sbjct: 115  LSCGID--DATRTRTWVSAAVNRNVKELCVNFYEGGESESFVSPLCLFTCATLTKLKITS 172

Query: 1050 YVKLELPTVVGLPKLKYLKIKFGRFFDENSTAQLFSSCPLLEELVISNCCFEDMNVNCIV 871
            +  L L + + LP LK L ++   F DE+ST Q+  +   LE+L IS   ++++     +
Sbjct: 173  HGVLRLSSSISLPCLKILSLQHVVFPDEDSTQQIL-NLRTLEKLKISYYDWKNLKA---I 228

Query: 870  EISSPSLKSLTV--LHDRLVKSFYLPPVKISTSNLCNIRYYGN-PPEICLETLSSLSNVD 700
             IS+P L+SL +  +H   ++      V I  + L    + G    + CL   SSL    
Sbjct: 229  TISAPKLRSLDICEMHRNDLRGSDACHVMIFGTALTFFSFSGGFWDDYCLFKSSSLVEAY 288

Query: 699  F------EFTSPLVTRARAILMGLQNVVRMVLRGFFIELLSRNEGSLACLPTSCFSLEYL 538
            F      E +  +  RA   ++GL  V  + L    +++    E     LPT+C   +++
Sbjct: 289  FHVYGCYERSREIAHRAYKHIVGLSTVKHLTLTPDVLKIELSEE-----LPTNCAKDDWI 343

Query: 537  QLDVKP 520
               V P
Sbjct: 344  LEPVPP 349


>ref|XP_003588677.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
            gi|355477725|gb|AES58928.1| F-box/FBD/LRR-repeat protein
            [Medicago truncatula]
          Length = 657

 Score = 97.8 bits (242), Expect = 6e-18
 Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 6/323 (1%)
 Frame = -3

Query: 1395 DAIKTSSLSKKWLNVCTSLTNIEFDQ----VKFERWSRGKRQFKDFVNQTLVLHGGLDID 1228
            D ++TS LS KW     ++ N+ FD        E  +  KR+    ++  L+L+ G  I+
Sbjct: 344  DVVRTSILSNKWRYKWITIPNLVFDSQCVSATSEHPAAIKRKLLAIIDHVLLLYYG-PIN 402

Query: 1227 KFSIYIDIGGISMSNVNSWIYFAVNHNVKEVDIAGYYGYFEKLPCCLFTCGTLSVLTLEY 1048
            KF +    G IS + ++ WI+     ++KE+ +    G   K+P CLF+C +L  LTL  
Sbjct: 403  KFKLS-PFGLISATALDRWIFHLTRRSIKELVLGLSIGQSYKIPWCLFSCQSLHYLTLFS 461

Query: 1047 VKLELPTVV-GLPKLKYLKIKFGRFFDENSTAQLFSSCPLLEELVISNCCFEDMNVNCIV 871
              L+ P+++ GL  LK L +       +++   L SSCPLLE+L+++   F+       +
Sbjct: 462  CLLKPPSMIEGLKNLKSLYL-VKVTISQDAFESLISSCPLLEKLMLAE--FDGFTQ---I 515

Query: 870  EISSPSLKSLTVLHDRLVKSFYLPPVKISTSNLCNIRYYGNPPEICLETLSSLSNVDFEF 691
             I +P+L  L +     V  F      IS  N   + Y      +CL + S+ S +    
Sbjct: 516  NIHAPNLNGLGI-----VGKF----EDISFENTYLLNYVIVDLSLCLNSESNHSRLQGSS 566

Query: 690  TSPLVTRARAILMGLQNVVRMVLRGFFIELLSRNEGSLACLPTSCFSLEYLQLDVK-PSK 514
            ++ L   A      + ++ ++ +RG+F + L+     +  LPT C +L YL L +     
Sbjct: 567  SNLLNFFAH-----IHHIYKLDIRGYFFKYLAAGVVPVK-LPTPCINLTYLWLSINFYDL 620

Query: 513  EQVQVVILLLRNYPNLKHLRISV 445
            +++   + + R+ PNLK L I V
Sbjct: 621  KEISTALCVFRSSPNLKELNIFV 643



 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 10/325 (3%)
 Frame = -3

Query: 1395 DAIKTSSLSKKWLNVCTSLTNIEFDQVKFERWSRG----KRQFKDFVNQTLVLHGGLDID 1228
            D ++TS L  KW    T++ N+ FD+      S      +R+    ++  L+L+ G  I+
Sbjct: 28   DVVRTSVLCNKWRYKWTTIPNLVFDKQCVSATSHRPLVIERKLLAIIDHVLLLYSG-PIN 86

Query: 1227 KFSIYIDIGGISMSNVNSWIYFAVNHNVKEVDIAGYYGYFEKLPCCLFTCGTLSVLTLEY 1048
            KF                        ++K++ I    G   K+P CLF+C +L  L+L Y
Sbjct: 87   KFK----------------------RSIKKLVIEISKGQPYKIPWCLFSCQSLLHLSLSY 124

Query: 1047 VKLELP-TVVGLPKLKYLKIKFGRFFDENSTAQLFSSCPLLEELVISNCCFEDMNVNCIV 871
              L+ P T+VG   LK L++       +++   L   CPLLE+L+     F++      +
Sbjct: 125  GLLKPPSTIVGFKNLKSLELDHFT-MSQDAFENLLFGCPLLEKLI-----FDEFEGFTKI 178

Query: 870  EISSPSLKSLTVLHD----RLVKSFYLPPVKISTSNLCNIRYYGNPPEICLETLSSLSNV 703
             I++P+LKSL +         + +F L  V +  S   N     N     L+  + L +V
Sbjct: 179  NINAPNLKSLGISGKFEDISFINTFKLTCVAVDLSLYLNSESSSN----LLDFFTQLHHV 234

Query: 702  DFEFTSPLVTRARAILMGLQNVVRMVLRGFFIELLSRNEGSLACLPTSCFSLEYLQLDVK 523
               + S   ++++       +VV   L    + L          LPT C +L  L L + 
Sbjct: 235  YELYVSGYFSKSKF------SVVHQYLAAGVVPLK---------LPTPCINLMSLWLSIN 279

Query: 522  PSK-EQVQVVILLLRNYPNLKHLRI 451
             ++ +++   + + R+ PNLK L+I
Sbjct: 280  FNELKEISTALSVFRSSPNLKELKI 304


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