BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010976
         (706 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like...   135   1e-52
gb|ADE75875.1| unknown [Picea sitchensis]                             129   1e-52
ref|XP_002904206.1| pre-mRNA-splicing factor RSE1 [Phytophthora ...   105   1e-41
gb|EGZ07437.1| hypothetical protein PHYSODRAFT_565381 [Phytophth...   103   4e-41
emb|CCA24429.1| splicing factor putative [Albugo laibachii Nc14]       95   1e-38

>ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like [Cucumis sativus]
            gi|449513493|ref|XP_004164340.1| PREDICTED: splicing
            factor 3B subunit 3-like [Cucumis sativus]
          Length = 1214

 Score =  135 bits (340), Expect(2) = 1e-52
 Identities = 60/87 (68%), Positives = 74/87 (85%)
 Frame = +3

Query: 3    GGKIKWEEGKLNGAPNKFEEIVQFHVGDTITCLEKTSLILGGHDCIVYGTVMGCIGALQA 182
            GGKIKWE+GKLNGAPNK EEI+QFH+GD +T L+K SLI GG +CI+YGTVMG +GAL A
Sbjct: 1070 GGKIKWEQGKLNGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTVMGSLGALHA 1129

Query: 183  LTFREDIEFFSRLEMNIRQEHPPVWKR 263
             T R+D++FFS LEM++RQEHPP+  R
Sbjct: 1130 FTSRDDVDFFSHLEMHMRQEHPPLCGR 1156



 Score = 97.4 bits (241), Expect(2) = 1e-52
 Identities = 48/63 (76%), Positives = 55/63 (87%)
 Frame = +1

Query: 250  LCGRDHLAYRSAYFPVKNVIDGDLCEQFSTLSPVVQKKIADELDRRTPQEILKKLEDMRN 429
            LCGRDH+ YRSAYFPVK+VIDGDLCEQF +L   +Q+KIADELD RTP EILKKLE++RN
Sbjct: 1153 LCGRDHMGYRSAYFPVKDVIDGDLCEQFPSLPLDMQRKIADELD-RTPGEILKKLEEVRN 1211

Query: 430  NII 438
             II
Sbjct: 1212 KII 1214


>gb|ADE75875.1| unknown [Picea sitchensis]
          Length = 173

 Score =  129 bits (325), Expect(2) = 1e-52
 Identities = 57/87 (65%), Positives = 72/87 (82%)
 Frame = +3

Query: 3   GGKIKWEEGKLNGAPNKFEEIVQFHVGDTITCLEKTSLILGGHDCIVYGTVMGCIGALQA 182
           GG+I+WE+GKLNGAPNK EEI+QFH+GD +T L+K SLI GG +C++YGTVMG IGAL  
Sbjct: 29  GGRIRWEQGKLNGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECLIYGTVMGSIGALLP 88

Query: 183 LTFREDIEFFSRLEMNIRQEHPPVWKR 263
            T RED++FFS LEM++RQE PP+  R
Sbjct: 89  FTSREDVDFFSHLEMHLRQEQPPLCGR 115



 Score =  103 bits (256), Expect(2) = 1e-52
 Identities = 50/63 (79%), Positives = 56/63 (88%)
 Frame = +1

Query: 250 LCGRDHLAYRSAYFPVKNVIDGDLCEQFSTLSPVVQKKIADELDRRTPQEILKKLEDMRN 429
           LCGRDH+ YRS+YFPVK+VIDGDLCEQF TL P +Q+KIADELD RTP EILKKLED+RN
Sbjct: 112 LCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELD-RTPGEILKKLEDIRN 170

Query: 430 NII 438
            II
Sbjct: 171 KII 173


>ref|XP_002904206.1| pre-mRNA-splicing factor RSE1 [Phytophthora infestans T30-4]
            gi|262096332|gb|EEY54384.1| pre-mRNA-splicing factor RSE1
            [Phytophthora infestans T30-4]
          Length = 1197

 Score =  105 bits (261), Expect(2) = 1e-41
 Identities = 45/87 (51%), Positives = 64/87 (73%)
 Frame = +3

Query: 3    GGKIKWEEGKLNGAPNKFEEIVQFHVGDTITCLEKTSLILGGHDCIVYGTVMGCIGALQA 182
            G +I W+ G LNGAPNK E++ QFHVGD +T + ++SL+ GG + ++Y T+MG IGAL  
Sbjct: 1053 GNRILWDSGLLNGAPNKLEQVAQFHVGDVVTSMVRSSLVPGGTEAVIYATIMGRIGALIP 1112

Query: 183  LTFREDIEFFSRLEMNIRQEHPPVWKR 263
             T RED++F++ LEM +RQE PP+  R
Sbjct: 1113 FTSREDVDFYTHLEMYMRQEQPPLCGR 1139



 Score = 90.9 bits (224), Expect(2) = 1e-41
 Identities = 42/63 (66%), Positives = 52/63 (82%)
 Frame = +1

Query: 250  LCGRDHLAYRSAYFPVKNVIDGDLCEQFSTLSPVVQKKIADELDRRTPQEILKKLEDMRN 429
            LCGRDHL+YRS Y PVKN+ DGDLCEQFS+LS   Q  +A++LD RTP E+LKKLED+RN
Sbjct: 1136 LCGRDHLSYRSYYIPVKNITDGDLCEQFSSLSVEKQASVAEDLD-RTPAEVLKKLEDIRN 1194

Query: 430  NII 438
             ++
Sbjct: 1195 RLL 1197


>gb|EGZ07437.1| hypothetical protein PHYSODRAFT_565381 [Phytophthora sojae]
          Length = 1197

 Score =  103 bits (256), Expect(2) = 4e-41
 Identities = 45/85 (52%), Positives = 63/85 (74%)
 Frame = +3

Query: 9    KIKWEEGKLNGAPNKFEEIVQFHVGDTITCLEKTSLILGGHDCIVYGTVMGCIGALQALT 188
            +I W+ G LNGAPNK E++ QFHVGD +T + +TSL+ GG + I+Y T+MG IGAL   T
Sbjct: 1055 RILWDSGLLNGAPNKLEQVAQFHVGDVVTSMVRTSLVPGGIEAIIYATIMGRIGALIPFT 1114

Query: 189  FREDIEFFSRLEMNIRQEHPPVWKR 263
             R+D++F++ LEM +RQE PP+  R
Sbjct: 1115 SRQDVDFYTHLEMYMRQEQPPLCGR 1139



 Score = 91.3 bits (225), Expect(2) = 4e-41
 Identities = 43/63 (68%), Positives = 52/63 (82%)
 Frame = +1

Query: 250  LCGRDHLAYRSAYFPVKNVIDGDLCEQFSTLSPVVQKKIADELDRRTPQEILKKLEDMRN 429
            LCGRDHL+YRS Y PVKNV DGDLCEQFS+LS   Q  +A++LD RTP E+LKKLED+RN
Sbjct: 1136 LCGRDHLSYRSYYIPVKNVTDGDLCEQFSSLSVEKQASVAEDLD-RTPAEVLKKLEDIRN 1194

Query: 430  NII 438
             ++
Sbjct: 1195 RLL 1197


>emb|CCA24429.1| splicing factor putative [Albugo laibachii Nc14]
          Length = 1644

 Score = 94.7 bits (234), Expect(2) = 1e-38
 Identities = 43/87 (49%), Positives = 63/87 (72%)
 Frame = +3

Query: 3    GGKIKWEEGKLNGAPNKFEEIVQFHVGDTITCLEKTSLILGGHDCIVYGTVMGCIGALQA 182
            G ++ W+ G LNGAP+K E+I QFHVG+ IT + +TSL+ GG + I+Y T++G IGAL  
Sbjct: 1500 GNRMLWDTGLLNGAPHKLEQIAQFHVGEVITSVLRTSLVPGGMEVILYTTILGRIGALVP 1559

Query: 183  LTFREDIEFFSRLEMNIRQEHPPVWKR 263
             T R+D++F++ LEM +RQE  P+  R
Sbjct: 1560 FTSRDDVDFYTHLEMYMRQEKAPLCGR 1586



 Score = 91.3 bits (225), Expect(2) = 1e-38
 Identities = 42/63 (66%), Positives = 52/63 (82%)
 Frame = +1

Query: 250  LCGRDHLAYRSAYFPVKNVIDGDLCEQFSTLSPVVQKKIADELDRRTPQEILKKLEDMRN 429
            LCGRDHL+YRS + PVKNV DGDLCEQFS+L P  QK IA++LD RTP E++KKL+D RN
Sbjct: 1583 LCGRDHLSYRSYFIPVKNVTDGDLCEQFSSLGPDKQKNIAEDLD-RTPTEVVKKLQDTRN 1641

Query: 430  NII 438
             ++
Sbjct: 1642 RVL 1644