BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010960
         (1251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    43   7e-10
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    40   3e-06
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...    39   6e-06

>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1449

 Score = 43.1 bits (100), Expect(3) = 7e-10
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +3

Query: 267 PFVFYNAEADKEDYKNLVHAILGVT----FEGNPMYVLFSKLKALKPATKGWSKQKYQNM 434
           PF F NA AD E++K LV      T       + ++    KLKALKP  +G +K+K  N+
Sbjct: 665 PFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKLRGLAKEKMGNL 724

Query: 435 QLEQSETRKQL-NVQMQLQENPSE 503
                E    L   Q    +NPS+
Sbjct: 725 VKRTREAYLSLCQAQQSNSQNPSQ 748



 Score = 37.7 bits (86), Expect(3) = 7e-10
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 821 AKADDLERDVTDEEINAVVFSFENEKSPRPDGYGAYFSK 937
           A+ D L   V+ +EI   +FS  N+KSP PDGY + F K
Sbjct: 859 AEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYK 897



 Score = 29.3 bits (64), Expect(3) = 7e-10
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 565 EESITKKNDVCDWMSYGEAN--TAFTK*SRMLGQNSL*GLIKEDGSITSSEQEVIEEIEM 738
           EE   K+     W+  G+ N  T     +    QNS+  + KEDGS  +++ ++  E E 
Sbjct: 768 EEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNETER 827

Query: 739 Y 741
           +
Sbjct: 828 F 828


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 40.4 bits (93), Expect(3) = 3e-06
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +2

Query: 836 LERDVTDEEINAVVFSFENEKSPRPDGYGAYFSK 937
           L   V+ EEI+ VVFS  N+KSP PDGY A F K
Sbjct: 337 LTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYK 370



 Score = 29.6 bits (65), Expect(3) = 3e-06
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 544 FNYLKRTEESITKKNDVCDWMSYGEANTAFTK*SRML--GQNSL*GLIKEDGSITSSEQE 717
           ++++   EE   K+     W+  G+ N      + +    QNS+  +I  DGS+ S E++
Sbjct: 234 WDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEK 293

Query: 718 VIEEIE 735
           +  E E
Sbjct: 294 IKTEAE 299



 Score = 27.3 bits (59), Expect(3) = 3e-06
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
 Frame = +3

Query: 267 PFVFYNAEADKEDYKNLVHAILGVT----FEGNPMYVLFSKLKALKPATKGWSKQKYQNM 434
           PF F N   + E +   V +    T       + ++    KLK LKP  +   K++  N+
Sbjct: 138 PFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERLGNL 197

Query: 435 ---QLEQSETRKQLNVQMQLQENPSEIQ 509
                E  ET  Q         +PS +Q
Sbjct: 198 VKQTKEAFETLCQKQAMKMANPSPSSMQ 225


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
           putative protein [Arabidopsis thaliana]
          Length = 1141

 Score = 38.9 bits (89), Expect(3) = 6e-06
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 267 PFVFYNAEADKEDYKNLVHAI-LGVTFEGNPMYVLFSKLKALKPATKGWSKQKYQNMQLE 443
           PF F+N      ++ NLV  +       G+ M+ +  KLKALK   K +S+  Y N++  
Sbjct: 240 PFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKR 299

Query: 444 QSETRKQ-LNVQMQLQENPS 500
             E  +  L+ Q    +NPS
Sbjct: 300 TEEAHETLLSFQNLTLDNPS 319



 Score = 29.6 bits (65), Expect(3) = 6e-06
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 553 LKRTEESITKKNDVCDWMSYGEANTAFTK*SRMLGQ----NSL*GLIKEDGSITSSEQEV 720
           L   EES  ++     W + G+ NT +    RM       N++  L+ + G+   S+Q +
Sbjct: 336 LATAEESFFRQRSRVTWFAEGDGNTRYF--HRMADSRKSVNTITTLVDDSGTQIDSQQGI 393

Query: 721 IEEIEMY*AILLSSDH 768
            +   +Y   LLS D+
Sbjct: 394 ADHCALYFENLLSDDN 409



 Score = 27.7 bits (60), Expect(3) = 6e-06
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 833 DLERDVTDEEINAVVFSFENEKSPRPDGY 919
           DLE   +DE+I A  F   + K+  PDG+
Sbjct: 434 DLEAMFSDEDIKAAFFGLPSNKACGPDGF 462