BLASTX nr result
ID: Coptis21_contig00010960
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00010960 (1251 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 43 7e-10 gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 40 3e-06 emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 39 6e-06 >gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1449 Score = 43.1 bits (100), Expect(3) = 7e-10 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = +3 Query: 267 PFVFYNAEADKEDYKNLVHAILGVT----FEGNPMYVLFSKLKALKPATKGWSKQKYQNM 434 PF F NA AD E++K LV T + ++ KLKALKP +G +K+K N+ Sbjct: 665 PFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKLRGLAKEKMGNL 724 Query: 435 QLEQSETRKQL-NVQMQLQENPSE 503 E L Q +NPS+ Sbjct: 725 VKRTREAYLSLCQAQQSNSQNPSQ 748 Score = 37.7 bits (86), Expect(3) = 7e-10 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = +2 Query: 821 AKADDLERDVTDEEINAVVFSFENEKSPRPDGYGAYFSK 937 A+ D L V+ +EI +FS N+KSP PDGY + F K Sbjct: 859 AEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYK 897 Score = 29.3 bits (64), Expect(3) = 7e-10 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +1 Query: 565 EESITKKNDVCDWMSYGEAN--TAFTK*SRMLGQNSL*GLIKEDGSITSSEQEVIEEIEM 738 EE K+ W+ G+ N T + QNS+ + KEDGS +++ ++ E E Sbjct: 768 EEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNETER 827 Query: 739 Y 741 + Sbjct: 828 F 828 >gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana] Length = 928 Score = 40.4 bits (93), Expect(3) = 3e-06 Identities = 20/34 (58%), Positives = 23/34 (67%) Frame = +2 Query: 836 LERDVTDEEINAVVFSFENEKSPRPDGYGAYFSK 937 L V+ EEI+ VVFS N+KSP PDGY A F K Sbjct: 337 LTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYK 370 Score = 29.6 bits (65), Expect(3) = 3e-06 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +1 Query: 544 FNYLKRTEESITKKNDVCDWMSYGEANTAFTK*SRML--GQNSL*GLIKEDGSITSSEQE 717 ++++ EE K+ W+ G+ N + + QNS+ +I DGS+ S E++ Sbjct: 234 WDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEK 293 Query: 718 VIEEIE 735 + E E Sbjct: 294 IKTEAE 299 Score = 27.3 bits (59), Expect(3) = 3e-06 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 7/88 (7%) Frame = +3 Query: 267 PFVFYNAEADKEDYKNLVHAILGVT----FEGNPMYVLFSKLKALKPATKGWSKQKYQNM 434 PF F N + E + V + T + ++ KLK LKP + K++ N+ Sbjct: 138 PFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERLGNL 197 Query: 435 ---QLEQSETRKQLNVQMQLQENPSEIQ 509 E ET Q +PS +Q Sbjct: 198 VKQTKEAFETLCQKQAMKMANPSPSSMQ 225 >emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1| putative protein [Arabidopsis thaliana] Length = 1141 Score = 38.9 bits (89), Expect(3) = 6e-06 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +3 Query: 267 PFVFYNAEADKEDYKNLVHAI-LGVTFEGNPMYVLFSKLKALKPATKGWSKQKYQNMQLE 443 PF F+N ++ NLV + G+ M+ + KLKALK K +S+ Y N++ Sbjct: 240 PFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKR 299 Query: 444 QSETRKQ-LNVQMQLQENPS 500 E + L+ Q +NPS Sbjct: 300 TEEAHETLLSFQNLTLDNPS 319 Score = 29.6 bits (65), Expect(3) = 6e-06 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Frame = +1 Query: 553 LKRTEESITKKNDVCDWMSYGEANTAFTK*SRMLGQ----NSL*GLIKEDGSITSSEQEV 720 L EES ++ W + G+ NT + RM N++ L+ + G+ S+Q + Sbjct: 336 LATAEESFFRQRSRVTWFAEGDGNTRYF--HRMADSRKSVNTITTLVDDSGTQIDSQQGI 393 Query: 721 IEEIEMY*AILLSSDH 768 + +Y LLS D+ Sbjct: 394 ADHCALYFENLLSDDN 409 Score = 27.7 bits (60), Expect(3) = 6e-06 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 833 DLERDVTDEEINAVVFSFENEKSPRPDGY 919 DLE +DE+I A F + K+ PDG+ Sbjct: 434 DLEAMFSDEDIKAAFFGLPSNKACGPDGF 462