BLASTX nr result

ID: Coptis21_contig00010880 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010880
         (824 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268720.1| PREDICTED: uncharacterized protein LOC100249...   112   8e-23
ref|XP_002329642.1| predicted protein [Populus trichocarpa] gi|2...   108   1e-21
gb|ABK94857.1| unknown [Populus trichocarpa]                          107   3e-21
ref|XP_002532085.1| conserved hypothetical protein [Ricinus comm...   107   4e-21
gb|ABK96592.1| unknown [Populus trichocarpa x Populus deltoides]      105   1e-20

>ref|XP_002268720.1| PREDICTED: uncharacterized protein LOC100249657 [Vitis vinifera]
           gi|297735416|emb|CBI17856.3| unnamed protein product
           [Vitis vinifera]
          Length = 186

 Score =  112 bits (281), Expect = 8e-23
 Identities = 84/187 (44%), Positives = 100/187 (53%), Gaps = 4/187 (2%)
 Frame = -2

Query: 760 MAFASSQQSFLTNALISSLKPKYTNLNTS--TKILCQSPAKKDNGSSST-RELQLAKLAM 590
           M+ A SQQSF  NAL S+  PK  N+ TS  + I C+SP+   +G S   RE QLAKLAM
Sbjct: 1   MSIALSQQSFFFNALSSTHFPK-RNIFTSVTSTISCRSPSDDCDGDSPRKRENQLAKLAM 59

Query: 589 VTLAAGVLTLGSVDGALAAKSAGRVGGQAFXXXXXXXXXXRYNNSRTNIYVN-XXXXXXX 413
           VTLAAGVLTLGSV  A AAK+ GR+GGQAF          R NNSRTNIY+N        
Sbjct: 60  VTLAAGVLTLGSVHEASAAKTGGRIGGQAFRSAPPRASSPRINNSRTNIYINPPVAPPLV 119

Query: 412 XXXXXXXXXXXXXXXGWSPFSFFXXXXXXXXXXXXGFELLPLFIXXXXXXXXXXXXXGSR 233
                          GWSPFSFF            GFE+L LF+             GS+
Sbjct: 120 GGYGFGYGVPFYGGWGWSPFSFFAPGPSVAIGVGGGFEVLVLFMFLGAVAAVIRRFAGSK 179

Query: 232 DDENDDY 212
           D+++D Y
Sbjct: 180 DEDDDYY 186


>ref|XP_002329642.1| predicted protein [Populus trichocarpa] gi|222870523|gb|EEF07654.1|
           predicted protein [Populus trichocarpa]
          Length = 188

 Score =  108 bits (271), Expect = 1e-21
 Identities = 83/189 (43%), Positives = 93/189 (49%), Gaps = 5/189 (2%)
 Frame = -2

Query: 763 TMAFASSQQSFLTNALISSL--KPKYTNLNTSTKILCQSPAKKDNGSSSTREL--QLAKL 596
           +MA AS QQSFLTNALI+ L  KPK   LN+   + C         S S+R+   QLAK 
Sbjct: 2   SMAIASFQQSFLTNALITPLLHKPKTNFLNSVPIVSCNYSRDDQKDSFSSRKTVDQLAKF 61

Query: 595 AMVTLAAGVLTLGSVDGALAAKSAGRVGGQAFXXXXXXXXXXRYNNSRTNIYVN-XXXXX 419
           A+VTLAAGVL +GSV  A AAKS GRVGGQAF            NNSRTNIYVN      
Sbjct: 62  AVVTLAAGVLAVGSVGDASAAKSGGRVGGQAFRSSAPRSAPRINNNSRTNIYVNPPVAPP 121

Query: 418 XXXXXXXXXXXXXXXXXGWSPFSFFXXXXXXXXXXXXGFELLPLFIXXXXXXXXXXXXXG 239
                            GWSPFSFF            GFE L  F+             G
Sbjct: 122 LVGGYGYGYGVPFYGGWGWSPFSFFAPGPSAAVGIGGGFETLVFFVFIGAVAAVVRRFFG 181

Query: 238 SRDDENDDY 212
           SRD+  DDY
Sbjct: 182 SRDE--DDY 188


>gb|ABK94857.1| unknown [Populus trichocarpa]
          Length = 188

 Score =  107 bits (267), Expect = 3e-21
 Identities = 82/189 (43%), Positives = 92/189 (48%), Gaps = 5/189 (2%)
 Frame = -2

Query: 763 TMAFASSQQSFLTNALISSL--KPKYTNLNTSTKILCQSPAKKDNGSSSTREL--QLAKL 596
           +MA AS QQ FLTNALI+ L  KPK   LN+   + C         S S+R+   QLAK 
Sbjct: 2   SMAIASFQQGFLTNALITPLLHKPKTNFLNSVPIVSCNYSRDDQKDSFSSRKTVDQLAKF 61

Query: 595 AMVTLAAGVLTLGSVDGALAAKSAGRVGGQAFXXXXXXXXXXRYNNSRTNIYVN-XXXXX 419
           A+VTLAAGVL +GSV  A AAKS GRVGGQAF            NNSRTNIYVN      
Sbjct: 62  AVVTLAAGVLAVGSVGDASAAKSGGRVGGQAFRSSAPRSAPRINNNSRTNIYVNPPVAPP 121

Query: 418 XXXXXXXXXXXXXXXXXGWSPFSFFXXXXXXXXXXXXGFELLPLFIXXXXXXXXXXXXXG 239
                            GWSPFSFF            GFE L  F+             G
Sbjct: 122 LVGGYGYGYGVPFYGGWGWSPFSFFAPGPSAAVGIGGGFETLVFFVFIGAVAAVVRRFFG 181

Query: 238 SRDDENDDY 212
           SRD+  DDY
Sbjct: 182 SRDE--DDY 188


>ref|XP_002532085.1| conserved hypothetical protein [Ricinus communis]
           gi|223528245|gb|EEF30299.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 184

 Score =  107 bits (266), Expect = 4e-21
 Identities = 77/182 (42%), Positives = 91/182 (50%), Gaps = 2/182 (1%)
 Frame = -2

Query: 763 TMAFASSQQSFLTNALISSLKPKYTNLNTSTKILCQSPAKKDNGSSST-RELQLAKLAMV 587
           T+A ASSQ SF  N+L   ++   T L +++ I C+      N S  T RE +LAKLA+V
Sbjct: 2   TIAIASSQHSFFANSLAPLIQKPKTKLVSTSTISCKHSQDDHNDSGRTKRENKLAKLAIV 61

Query: 586 TLAAGVLTLGSVDGALAAKSAGRVGGQAFXXXXXXXXXXRYNNSRTNIYVN-XXXXXXXX 410
           TLAAGVLTLGSV  A AAKS GRVGGQAF            NNSRTNIYVN         
Sbjct: 62  TLAAGVLTLGSVGDASAAKSGGRVGGQAFRSSAPRSSPRINNNSRTNIYVNPPVAPPLVG 121

Query: 409 XXXXXXXXXXXXXXGWSPFSFFXXXXXXXXXXXXGFELLPLFIXXXXXXXXXXXXXGSRD 230
                         GWSPFSFF            GF+ L LF+             GSRD
Sbjct: 122 GYGYGYGVPFYGGWGWSPFSFFAPGPGVAVGIGGGFDTLVLFMFLGAAAAVIRRFFGSRD 181

Query: 229 DE 224
           ++
Sbjct: 182 ED 183


>gb|ABK96592.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 188

 Score =  105 bits (262), Expect = 1e-20
 Identities = 81/189 (42%), Positives = 92/189 (48%), Gaps = 5/189 (2%)
 Frame = -2

Query: 763 TMAFASSQQSFLTNALISSL--KPKYTNLNTSTKILCQSPAKKDNGSSSTREL--QLAKL 596
           +MA AS QQSFL+NALI+ L  KPK    N+   + C         S S+R+   QLAK 
Sbjct: 2   SMAIASFQQSFLSNALITPLLHKPKTNFFNSVPIVSCNYSRDDQKDSCSSRKTVDQLAKF 61

Query: 595 AMVTLAAGVLTLGSVDGALAAKSAGRVGGQAFXXXXXXXXXXRYNNSRTNIYVN-XXXXX 419
           A+VTLAAGVL +GSV  A AAKS GRVGGQAF            NNSRTNIYVN      
Sbjct: 62  AVVTLAAGVLAVGSVGDASAAKSGGRVGGQAFRSSAPRSAPRINNNSRTNIYVNPPVAPP 121

Query: 418 XXXXXXXXXXXXXXXXXGWSPFSFFXXXXXXXXXXXXGFELLPLFIXXXXXXXXXXXXXG 239
                            GWSPFSFF            GFE L  F+             G
Sbjct: 122 LVGGYGYGYGVPFYGGWGWSPFSFFAPGPSVAVGIGGGFETLVFFMFIGAMAAVVRRFFG 181

Query: 238 SRDDENDDY 212
           SRD+  DDY
Sbjct: 182 SRDE--DDY 188


Top