BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010820
         (858 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35920.3| unnamed protein product [Vitis vinifera]              210   4e-52
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   210   4e-52
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...   185   1e-44
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   183   5e-44
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2...   181   2e-43

>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  210 bits (534), Expect = 4e-52
 Identities = 117/255 (45%), Positives = 160/255 (62%), Gaps = 7/255 (2%)
 Frame = -2

Query: 746 NPEKIAPIVGYFPSGYNCSS----EEKNGPLVTVYTKRPR--RVQVVVSPNQDSNIEFFG 585
           +PEKI P+VGYFPSG++       E    P V V+  + R  R+Q+VVSPN DS + F G
Sbjct: 7   HPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKVNFVG 65

Query: 584 ATHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRLKGLNSDEKKLPKESIE 405
            ++ GE    Q+CTYALGVLD++T TLKIVPIASNKI RLEPR+ G  SD       S+ 
Sbjct: 66  TSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGG--SDASVDEPSSLL 123

Query: 404 EDVSPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXKEKSAPKGQAVID-KIDGVKINKKA 228
           +    AE+   +  +LT ++G+              +K  P+ Q  +D K+  V INK+A
Sbjct: 124 KGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVINKEA 183

Query: 227 LKTTVGIHSRNIPPHDTIADTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPDAYPS 48
           L++T    +RNIPP+D  A TP+ AY LD+II   EWD+LLDIL+ +Q+G ++   AY S
Sbjct: 184 LESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESSAYSS 243

Query: 47  YVCNRIDKLMEIKDE 3
           +VCNRI KL E++DE
Sbjct: 244 FVCNRIQKLKELEDE 258


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score =  210 bits (534), Expect = 4e-52
 Identities = 117/255 (45%), Positives = 160/255 (62%), Gaps = 7/255 (2%)
 Frame = -2

Query: 746 NPEKIAPIVGYFPSGYNCSS----EEKNGPLVTVYTKRPR--RVQVVVSPNQDSNIEFFG 585
           +PEKI P+VGYFPSG++       E    P V V+  + R  R+Q+VVSPN DS + F G
Sbjct: 37  HPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKVNFVG 95

Query: 584 ATHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRLKGLNSDEKKLPKESIE 405
            ++ GE    Q+CTYALGVLD++T TLKIVPIASNKI RLEPR+ G  SD       S+ 
Sbjct: 96  TSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGG--SDASVDEPSSLL 153

Query: 404 EDVSPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXKEKSAPKGQAVID-KIDGVKINKKA 228
           +    AE+   +  +LT ++G+              +K  P+ Q  +D K+  V INK+A
Sbjct: 154 KGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVINKEA 213

Query: 227 LKTTVGIHSRNIPPHDTIADTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPDAYPS 48
           L++T    +RNIPP+D  A TP+ AY LD+II   EWD+LLDIL+ +Q+G ++   AY S
Sbjct: 214 LESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESSAYSS 273

Query: 47  YVCNRIDKLMEIKDE 3
           +VCNRI KL E++DE
Sbjct: 274 FVCNRIQKLKELEDE 288


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
           communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
           polymerase I 49 kDa polypeptide, putative [Ricinus
           communis]
          Length = 481

 Score =  185 bits (469), Expect = 1e-44
 Identities = 121/322 (37%), Positives = 171/322 (53%), Gaps = 37/322 (11%)
 Frame = -2

Query: 857 KKKKNKDTTQDVENDXXXXXXXXXXXXXXXXXXXXXENP-EKIAPIVGYFPSGYNCS--- 690
           K++K K+   D +ND                      +  +K  PIVGYFPSGY  S   
Sbjct: 30  KREKEKERCDDGQNDLLPVIDRPNEQSPLNVKIEVIYDQTDKTPPIVGYFPSGYKPSKHN 89

Query: 689 --------SEEKNG------PLVTVYTKRPR------------------RVQVVVSPNQD 606
                   S E+N       P V  Y    R                  R+++VVSPN  
Sbjct: 90  ESNNLHDTSNEENATSSLSQPSVKFYRNAQRTKIEKSSNERNEKWRSSERMELVVSPN-G 148

Query: 605 SNIEFFGATHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRLKGLNSDEKK 426
           SN++F G +++GE    Q+CTYALGVLD+ T TLKI+PIA NKI RLEP+++G+++ +K+
Sbjct: 149 SNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTLKIMPIAGNKIFRLEPKIQGVDASDKE 208

Query: 425 LPKESIEEDVSPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXKEKSAPKGQAVID-KIDG 249
            P     ED+S      +K+  LT  +G+              +   P+ +  +D KID 
Sbjct: 209 -PSVLENEDLSKENMAVRKKT-LTDTYGTKKSITQGKRMEIMMQGDNPESRKDLDQKIDN 266

Query: 248 VKINKKALKTTVGIHSRNIPPHDTIADTPERAYPLDQIILSAEWDHLLDILEHMQSGTKI 69
           V +NK AL+ T    +RNIPPH+T A TP+ AYPL +IIL+ EWD+L D+ E +Q+G   
Sbjct: 267 VVVNKAALEDTSAHVARNIPPHNTSATTPQEAYPLGRIILTGEWDYLEDLYEILQAGEGA 326

Query: 68  SPDAYPSYVCNRIDKLMEIKDE 3
           + +AYP +V NRI KL EI+DE
Sbjct: 327 AINAYPVFVRNRIHKLREIQDE 348


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score =  183 bits (464), Expect = 5e-44
 Identities = 105/252 (41%), Positives = 151/252 (59%), Gaps = 4/252 (1%)
 Frame = -2

Query: 746 NPEKIAPIVGYFPSGYNCSSEEKNGPL-VTVYTKR--PRRVQVVVSPNQDSNIEFFGATH 576
           +P K  P+VGYFPSG++       GP    VY  R  P+R+++VV P + S++EF G ++
Sbjct: 46  HPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPR-SSVEFVGTSY 104

Query: 575 EGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRLKGLNSDEKKLPKESIEEDV 396
            GE        YALGVLD++  TLK+VPIA NKI RLEP++KG+ + E +    ++EE  
Sbjct: 105 AGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENEPANSTLEEMT 164

Query: 395 SPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXKEKSAPKGQAVID-KIDGVKINKKALKT 219
                  QK  E T+++G+             ++   P  Q  +D K+  V +NKKAL++
Sbjct: 165 Q-----QQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKKALES 219

Query: 218 TVGIHSRNIPPHDTIADTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPDAYPSYVC 39
           T    SRNIPP+D  A TP+ AY LD+IIL  EWD+L DI  ++Q G +    AYP++V 
Sbjct: 220 TESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYPTFVR 279

Query: 38  NRIDKLMEIKDE 3
           NRI++L +IKDE
Sbjct: 280 NRIERLRKIKDE 291


>ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1|
           predicted protein [Populus trichocarpa]
          Length = 472

 Score =  181 bits (459), Expect = 2e-43
 Identities = 113/277 (40%), Positives = 159/277 (57%), Gaps = 31/277 (11%)
 Frame = -2

Query: 740 EKIAPIVGYFPSGYNC-------SSEEKNGPL-----VTVYTKRPR-------------- 639
           +K  P+VGYFPSGYN         ++E   PL     V +Y    R              
Sbjct: 66  DKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAKVEKSSGEKNEKG 125

Query: 638 ----RVQVVVSPNQDSNIEFFGATHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKIL 471
               R+++VVSPN  SN+EF G +++GE    Q+CTYALGVLD+ T TLKI+PIA NKIL
Sbjct: 126 RTSERLELVVSPN-GSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKIMPIAGNKIL 184

Query: 470 RLEPRLKGLNSDEKKLPKESIEEDVSPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXKEK 291
           RLEP+L+G  + +K+    + E     AE+   +  +L   +G              ++ 
Sbjct: 185 RLEPKLRGSLAADKE--HANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKKMQALRKG 242

Query: 290 SAPKGQAVID-KIDGVKINKKALKTTVGIHSRNIPPHDTIADTPERAYPLDQIILSAEWD 114
             P  Q  +  KI+   INK AL++T G  +RNIPP+++ A TP+ AYPLD IIL+ EWD
Sbjct: 243 DDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPYNSSAITPQEAYPLDGIILTGEWD 302

Query: 113 HLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKDE 3
            L DI + +Q G +++ +AYP++VCNRI KL EI+DE
Sbjct: 303 FLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQDE 339