BLASTX nr result

ID: Coptis21_contig00010818 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010818
         (621 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71216.1| hypothetical protein VITISV_033484 [Vitis vinifera]    78   1e-12
ref|XP_002284531.1| PREDICTED: uncharacterized protein At4g14450...    77   3e-12
emb|CBI23583.3| unnamed protein product [Vitis vinifera]               72   6e-11

>emb|CAN71216.1| hypothetical protein VITISV_033484 [Vitis vinifera]
          Length = 104

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 44/112 (39%), Positives = 63/112 (56%)
 Frame = +1

Query: 88  MAGSQEKRPNSGDDEQKKRSSRLQKRAPASIQVQPPSGFSAEWKVXXXXXXXXXXXXXXX 267
           MA + + RP++G +  ++  SRLQ+RAP+S+Q+ P    +A+WKV               
Sbjct: 1   MADTSQTRPSAGVN--RRPPSRLQRRAPSSLQISP----AADWKVAIPLLSPLATSPSSP 54

Query: 268 XXKDHTLDIKLSSAMHESRQDGQIDKPSFKLWQHPASPFHYEPTPFKQSFVP 423
              D T ++K      E RQ  + +KP FK WQHPA+PF YEP  F +SFVP
Sbjct: 55  KLIDRTAEVK---PKEEPRQTKEGEKPVFKKWQHPAAPFCYEPASFVRSFVP 103


>ref|XP_002284531.1| PREDICTED: uncharacterized protein At4g14450, chloroplastic-like
           [Vitis vinifera]
          Length = 104

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 44/112 (39%), Positives = 63/112 (56%)
 Frame = +1

Query: 88  MAGSQEKRPNSGDDEQKKRSSRLQKRAPASIQVQPPSGFSAEWKVXXXXXXXXXXXXXXX 267
           MA + + RP++G +  ++  SRLQ+RAP+S+Q+ P    +A+WKV               
Sbjct: 1   MADTSQTRPSAGVN--RRPPSRLQRRAPSSLQISP----AADWKVAIPLLSPLATSPSSP 54

Query: 268 XXKDHTLDIKLSSAMHESRQDGQIDKPSFKLWQHPASPFHYEPTPFKQSFVP 423
              D T ++K      E RQ  + +KP FK WQHPA+PF YEP  F +SFVP
Sbjct: 55  KLIDRTAEVK---PKEEPRQMKEGEKPVFKKWQHPAAPFCYEPASFVRSFVP 103


>emb|CBI23583.3| unnamed protein product [Vitis vinifera]
          Length = 1287

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 45/120 (37%), Positives = 60/120 (50%)
 Frame = +1

Query: 64   ISPIKILYMAGSQEKRPNSGDDEQKKRSSRLQKRAPASIQVQPPSGFSAEWKVXXXXXXX 243
            I  +K+L  AG   + P           SRLQ+RAP+S+Q+ P    +A+WKV       
Sbjct: 1185 IEELKMLPSAGVNRRPP-----------SRLQRRAPSSLQISP----AADWKVAIPLLSP 1229

Query: 244  XXXXXXXXXXKDHTLDIKLSSAMHESRQDGQIDKPSFKLWQHPASPFHYEPTPFKQSFVP 423
                       D T ++K      E RQ  + +KP FK WQHPA+PF YEP  F +SFVP
Sbjct: 1230 LATSPSSPKLIDRTAEVK---PKEEPRQMKEGEKPVFKKWQHPAAPFCYEPASFVRSFVP 1286


Top