BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010780
         (4032 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1417   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1397   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1372   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1372   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1370   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1417 bits (3668), Expect = 0.0
 Identities = 688/872 (78%), Positives = 771/872 (88%), Gaps = 1/872 (0%)
 Frame = -3

Query: 3508 QGLLKEMNKGEKKKYRKPKMVGGMGLAKYHMLKRRQVKIETEAWAQAAKEYKELLSDMCE 3329
            Q L++E+NKG+K + ++PK++GG+   K+++L+RRQ+K+ETEAW +AAKEY+ELLSDMCE
Sbjct: 113  QELVEEVNKGDKLE-KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCE 171

Query: 3328 HKLAPNLPYMKSLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHK 3149
             KLAPNLPY+KSLFLGWFEP +D I  EQDLCKQGKNRAAYAP FD LPADMMA+ITMHK
Sbjct: 172  QKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHK 231

Query: 3148 LMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXX 2969
            LMGLLMTG  +G ARVVQA+  +GEAIE EVRI RF+                       
Sbjct: 232  LMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT-- 289

Query: 2968 XXEQEQEKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQDAQAKVGSRLIELLLQTAYI 2789
               +EQEKLRK+V+ LMKKQKL QVRQIV+RQDD KPWGQDA  KVGSRLIELL++TAYI
Sbjct: 290  ---KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYI 346

Query: 2788 QPPVDQIADTPPDIRPAFTHSLKTLSKDGQKSTRRFGVVECDPLVRQGLEKTARHMVIPY 2609
            QPP DQ+ D PPDIRPAF H+LKT+ K+ QK TRR+GV+ECDPLVR+GLEKTARHMVIPY
Sbjct: 347  QPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 406

Query: 2608 MPMLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTK 2429
            MPMLVPP+NWTGY+KG YLFLPSY+MR HGA+QQR+A+K  P+K LEP FEALNTLGNTK
Sbjct: 407  MPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTK 466

Query: 2428 WRINKRVLGVIDRIWASGGRLAGLVDRDDVPLPVEPDTEDEAELXXXXXXXXXXXKENSE 2249
            WRINKRVLGVIDRIWASGGRLA LVDR+DVPLP EPDTEDEAE+           KENSE
Sbjct: 467  WRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSE 526

Query: 2248 RHSQRCDIELKLSVARKMKDESAFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEG 2069
            RHSQRCDIELKL+VARKMKDE  F+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEG
Sbjct: 527  RHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 586

Query: 2068 RPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAE 1889
            RPLGKSGLRWLKIH+AN+YAGGVDKLSY+GRV+FTENHL+DIFDSADRPLEG+RWWL AE
Sbjct: 587  RPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAE 646

Query: 1888 DPFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAG 1709
            DPFQCLA CINLSEALRSSSPETTIS+MPVHQDGSCNGLQHYAALGRDKLGA AVNLVAG
Sbjct: 647  DPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 706

Query: 1708 DKPADVYSGIATRVLEIMQQDAKRDPTNDADALCARLLVNQVNRKLVKQTVMTSVYGVTY 1529
            +KPADVYSGIA RVL+IMQ+DA++DP  + +AL ARLL++QV+RKLVKQTVMTSVYGVTY
Sbjct: 707  EKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTY 766

Query: 1528 IGAREQIKKRLKER-GVVDDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAKVIA 1352
            IGAR+QIK+RLKER  + D+ E+F A+CYAAK TLTALGEMF+AAR IMSWLG+CAKVIA
Sbjct: 767  IGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIA 826

Query: 1351 SENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHS 1172
            SENHPVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQRTAFPPNFVHS
Sbjct: 827  SENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHS 886

Query: 1171 LDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLES 992
            LDGSHMMMTA+AC+KAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY  PILENLLE 
Sbjct: 887  LDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEG 946

Query: 991  FQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 896
            FQ+SFPTL+FPPLPERGDFDL EV++SPYFFN
Sbjct: 947  FQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1397 bits (3617), Expect = 0.0
 Identities = 719/1040 (69%), Positives = 818/1040 (78%), Gaps = 34/1040 (3%)
 Frame = -3

Query: 3913 MFSSKPVIFSTNLNNKFHSFPSFNKPSQIFIYN--QTPIDMWRTFAKQVV--SARKIA-- 3752
            M S K  I S NL        SF KP+  F  N  + P  MWR  AK+ +  + RK    
Sbjct: 1    MSSGKTPILSANLGRDLDLIISFEKPTN-FRPNPLKKPTVMWRNIAKRAIPRAPRKCVYL 59

Query: 3751 -------KFSVNSFVET-------KFKPFELTKSGNFGFLEMGLCPNGELLWNKEESVVK 3614
                   ++S   F +        KF  FE +   + GF EMG    GE+  ++E++V +
Sbjct: 60   DSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEIS-SREDAVGR 118

Query: 3613 D---CFRSPIGLN-FASRGYTXXXXXXXXXXXXXXXXXV---QGLLKEMNKGEK-----K 3470
                C R+ +G + F  + Y                      Q LL EM K EK     K
Sbjct: 119  PSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFK 178

Query: 3469 KYRKPKMVGGMGLAKYHMLKRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSL 3290
            +  K KM  GM   +Y  L+RRQVKIETEAW  AAKEYKELL DMCE KLAPNLPYMKSL
Sbjct: 179  RREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSL 238

Query: 3289 FLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGC 3110
            FLGWFEP +D IV+EQ+LC+ GKN+AAYAP FD LPADMM++ITMHKL+GLLMTGGEHG 
Sbjct: 239  FLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGS 298

Query: 3109 ARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXEQEQEKLRKRV 2930
             RVVQA+  +G+AIEQEVRI+ FL                           EQEKLRK+V
Sbjct: 299  TRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVI---HEQEKLRKKV 355

Query: 2929 TTLMKKQKLHQVRQIVRRQDDLKPWGQDAQAKVGSRLIELLLQTAYIQPPVD-QIADTPP 2753
            T LMKKQKLH  RQIV+  D+ KPWG +A+AKVGSRLIELL+QTAYIQPPVD Q+ADTPP
Sbjct: 356  TNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPP 415

Query: 2752 DIRPAFTHSLKTLSKDGQKSTRRFGVVECDPLVRQGLEKTARHMVIPYMPMLVPPINWTG 2573
            DIRPAF H+ KT+ ++ +K  RRFGV+ECDPLV++GLE+TARHMVIPY+PMLVPP+ WTG
Sbjct: 416  DIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTG 475

Query: 2572 YEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVID 2393
            Y+KG +LFLPSY+MRTHGA+QQR+A+K  P+ QLEPVFEALNTLGNTKWRINKR+  V+D
Sbjct: 476  YDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVD 535

Query: 2392 RIWASGGRLAGLVDRDDVPLPVEPDTEDEAELXXXXXXXXXXXKENSERHSQRCDIELKL 2213
            RIWA GG LA LVDR+DVPLP +PDTEDEA+L           K NSERHSQRCDIELKL
Sbjct: 536  RIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKL 595

Query: 2212 SVARKMKDESAFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLK 2033
            +VARKMKDE  F+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRPLG SGL WLK
Sbjct: 596  AVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLK 655

Query: 2032 IHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINL 1853
            IH+ANL+AGGVDKLS++GR++FTENHLDDIFDSADRPLEGKRWWL AEDPFQ LAACINL
Sbjct: 656  IHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINL 715

Query: 1852 SEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAT 1673
            SEALRSSSPETTIS++PVHQDGSCNGLQHYAALGRD+LGATAVNLVAG+KPADVYSGIA 
Sbjct: 716  SEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAA 775

Query: 1672 RVLEIMQQDAKRDPTNDADALCARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLK 1493
            RVL+IM++DA++DP    DAL AR+L+NQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLK
Sbjct: 776  RVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 835

Query: 1492 ER-GVVDDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPL 1316
            ER  + DD ELFGAACYAAK+TLTALGEMFQAAR IMSWLG+CAK+IASEN PVRWTTPL
Sbjct: 836  ERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPL 895

Query: 1315 GLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIA 1136
            GLPVVQPYRKLGRHLIKTSLQVLTLQRET+ +MVKRQRTAFPPNFVHSLDGSHMMMTAIA
Sbjct: 896  GLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIA 955

Query: 1135 CKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPP 956
            CKKAGLNFAGVHDSYWTHACDVDEMNR+LREKFV+LYE PILENLLESFQQSFP L FPP
Sbjct: 956  CKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPP 1015

Query: 955  LPERGDFDLNEVMKSPYFFN 896
            LPERGDFDL EV++SPYFFN
Sbjct: 1016 LPERGDFDLREVLESPYFFN 1035


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1372 bits (3552), Expect = 0.0
 Identities = 666/877 (75%), Positives = 757/877 (86%), Gaps = 6/877 (0%)
 Frame = -3

Query: 3508 QGLLKEMNKGEKK-----KYRKPKMVGGMGLAKYHMLKRRQVKIETEAWAQAAKEYKELL 3344
            Q L++EM+K  +      + ++PK +GGMG+ KY+ L+RRQ+K+ETEAW +AAKEY+ELL
Sbjct: 133  QELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELL 192

Query: 3343 SDMCEHKLAPNLPYMKSLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMAL 3164
             DMCE KLAPNLPYMKSLFLGWFEP +D I  EQ LC +GKNR AYAP FD LPA+MMA+
Sbjct: 193  MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252

Query: 3163 ITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXX 2984
            ITMHKLMGLLMTGG  G ARVVQA+  +GEAIE E RI+RFL                  
Sbjct: 253  ITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPG 312

Query: 2983 XXXXXXXEQEQEKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQDAQAKVGSRLIELLL 2804
                    +E+E+LRK+V  LMKKQKL QVR+IV++QDD KPWGQD   KVG RLI++L+
Sbjct: 313  DMM-----KERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILM 367

Query: 2803 QTAYIQPPVDQIADTPPDIRPAFTHSLKTLSKDGQKSTRRFGVVECDPLVRQGLEKTARH 2624
            +TAYIQPP DQ+ D PPDIRPAF H+LKT+  +  K +RR+GV++CDPLVR+GL+KTARH
Sbjct: 368  ETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARH 425

Query: 2623 MVIPYMPMLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNT 2444
            MVIPYMPMLVPP +W GY+KGGYLFLPSYIMRTHGAKQQR+A+K  PKKQLEPVF+AL+T
Sbjct: 426  MVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDT 485

Query: 2443 LGNTKWRINKRVLGVIDRIWASGGRLAGLVDRDDVPLPVEPDTEDEAELXXXXXXXXXXX 2264
            LGNTKWR+N++VLG++DRIWASGGRLA LVDR+DVPLP  PDTEDEAE+           
Sbjct: 486  LGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVK 545

Query: 2263 KENSERHSQRCDIELKLSVARKMKDESAFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGAL 2084
            KEN ERHSQRCDIELKL+VARKMKDE  FYYPH++DFRGRAYPMHPYLNHLGSDLCRG L
Sbjct: 546  KENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 605

Query: 2083 EFAEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRW 1904
            EFAEGRPLG SGLRWLKIH+AN+Y GGVDKLSY+GRV+F+ENHL+DIFDSA+RPLEGKRW
Sbjct: 606  EFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRW 665

Query: 1903 WLEAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAV 1724
            WL AEDPFQCLA CIN++EALRS SPET ISYMP+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAV 725

Query: 1723 NLVAGDKPADVYSGIATRVLEIMQQDAKRDPTNDADALCARLLVNQVNRKLVKQTVMTSV 1544
            NLVAGDKPADVYSGIA RVL+IM++DA +DP ND + + ARLL+NQV+RKLVKQTVMTSV
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSV 785

Query: 1543 YGVTYIGAREQIKKRLKERGVV-DDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGEC 1367
            YGVTYIGAR+QIKKRLKERGV+ DD ELF AACYAAK TLTALGEMF+AAR IMSWLG+C
Sbjct: 786  YGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDC 845

Query: 1366 AKVIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPP 1187
            AK+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPP
Sbjct: 846  AKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPP 905

Query: 1186 NFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILE 1007
            NFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PILE
Sbjct: 906  NFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILE 965

Query: 1006 NLLESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 896
            NLLESFQQSFP L FPPLPERGDFDL EV++SPYFFN
Sbjct: 966  NLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1372 bits (3550), Expect = 0.0
 Identities = 704/1035 (68%), Positives = 821/1035 (79%), Gaps = 29/1035 (2%)
 Frame = -3

Query: 3913 MFSSKPVIFSTNLNNKFHSFPSFNKPSQIFI--YNQTPIDMWRTFAKQVVSA--RKIAKF 3746
            M S+K  I  T   N+F      +KP+ + I  Y+ +PI MWR   KQ+ S   +K+   
Sbjct: 1    MSSTKTPISLTIKLNQFT-----DKPTGLDINPYHNSPI-MWRNIIKQLSSRTPQKLLFS 54

Query: 3745 SVN---SFV----------ETKFKPFELTKSGNFGFLEMGLCPNGELLWNKEESVVKDCF 3605
            S N   SF+           TKF+        N   + MG    GE L   +E + +   
Sbjct: 55   SKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN---IVMGFQNLGEYLPG-DEFLSRPLI 110

Query: 3604 RSPIGLNF------ASRGYTXXXXXXXXXXXXXXXXXVQGLLKEMNKGEKKKY----RKP 3455
            ++ +  NF      AS                     V  LL E+ K EKK++    RK 
Sbjct: 111  KNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQ 170

Query: 3454 KMV-GGMGLAKYHMLKRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKSLFLGW 3278
            +M+  GMG  KY  LKRRQVK+ETEAW QAAKEYKELL DMCE KLAPNLPY+KSLFLGW
Sbjct: 171  RMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGW 230

Query: 3277 FEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHGCARVV 3098
            FEP +DKI EEQ+LC QGK++AAYA  F  LPADMMA+ITMHKLMGLLMTGG+HG ARVV
Sbjct: 231  FEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVV 290

Query: 3097 QASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXEQEQEKLRKRVTTLM 2918
            QA+L +G+AIEQEVRI+ FL                          QEQEKLRK+VT LM
Sbjct: 291  QAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVT-----QEQEKLRKKVTNLM 345

Query: 2917 KKQKLHQVRQIVRRQDDLKPWGQDAQAKVGSRLIELLLQTAYIQPPVDQIADTPPDIRPA 2738
            KKQKL  V QIVRRQDD KPWGQDA+AKVGSRLI+LLLQTAYIQPP +Q+A  PPDIRPA
Sbjct: 346  KKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPA 405

Query: 2737 FTHSLKTLSKDGQKSTRRFGVVECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYEKGG 2558
            F HS++T++K+ + ++RR+G+++CD LV +GLE+TARHMVIPYMPMLVPP+ WTGY+KGG
Sbjct: 406  FVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGG 465

Query: 2557 YLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDRIWAS 2378
            +L+LPSY+MRTHGA+QQR+A+K   + QL+PVFEAL+TLGNTKWRINKRVL V+DRIWA 
Sbjct: 466  HLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAG 525

Query: 2377 GGRLAGLVDRDDVPLPVEPDTEDEAELXXXXXXXXXXXKENSERHSQRCDIELKLSVARK 2198
            GGRLA LVDRDD PLP EPDTEDEA             KEN ERHSQRCDIELKL+VARK
Sbjct: 526  GGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARK 585

Query: 2197 MKDESAFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKIHIAN 2018
            MKDE +F+YPH+VDFRGRAYPMHP+LNHLGSD+CRG LEFAEGRPLG+SGLRWLKIH+AN
Sbjct: 586  MKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLAN 645

Query: 2017 LYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLSEALR 1838
            L+AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEG+RWWL AEDPFQCLA CINLSEA+R
Sbjct: 646  LFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVR 705

Query: 1837 SSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIATRVLEI 1658
            SSSPET++S++PVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSGIA RVL+I
Sbjct: 706  SSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDI 765

Query: 1657 MQQDAKRDPTNDADALCARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKERG-V 1481
            M++DA+RDP    DA+ AR+LVNQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLKERG +
Sbjct: 766  MKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI 825

Query: 1480 VDDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLGLPVV 1301
             DD+ELFGAACYAAKVTLTALGEMF+AAR IM+WLGECAK+IASEN PVRWTTPLGLPVV
Sbjct: 826  ADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVV 885

Query: 1300 QPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAG 1121
            QPYRK+GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AG
Sbjct: 886  QPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAG 945

Query: 1120 LNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPLPERG 941
            LNFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERG
Sbjct: 946  LNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERG 1005

Query: 940  DFDLNEVMKSPYFFN 896
            DFD+ +V++SPYFFN
Sbjct: 1006 DFDMRDVLESPYFFN 1020


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1370 bits (3547), Expect = 0.0
 Identities = 665/877 (75%), Positives = 757/877 (86%), Gaps = 6/877 (0%)
 Frame = -3

Query: 3508 QGLLKEMNKGEKK-----KYRKPKMVGGMGLAKYHMLKRRQVKIETEAWAQAAKEYKELL 3344
            Q L++EM+K  +      + ++PK +GGMG+ KY+ L+RRQ+K+ETEAW +AAKEY+ELL
Sbjct: 133  QELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELL 192

Query: 3343 SDMCEHKLAPNLPYMKSLFLGWFEPFKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMAL 3164
             DMCE KLAPNLPYMKSLFLGWFEP +D I  EQ LC +GKNR AYAP FD LPA+MMA+
Sbjct: 193  MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252

Query: 3163 ITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXX 2984
            ITMHKLMGLLMTGG  G ARVVQA+  +GEAIE E RI+RFL                  
Sbjct: 253  ITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPG 312

Query: 2983 XXXXXXXEQEQEKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQDAQAKVGSRLIELLL 2804
                    +E+E+LRK+V  LMKKQKL QVR+IV++QDD KPWGQD   KVG RLI++L+
Sbjct: 313  DMM-----KERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILM 367

Query: 2803 QTAYIQPPVDQIADTPPDIRPAFTHSLKTLSKDGQKSTRRFGVVECDPLVRQGLEKTARH 2624
            +TAYIQPP DQ+ D PPDIRPAF H+LKT+  +  K +RR+GV++CDPLVR+GL+KTARH
Sbjct: 368  ETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARH 425

Query: 2623 MVIPYMPMLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNT 2444
            MVIPYMPMLVPP +W GY+KGGYLFLPSYIMRTHGAKQQR+A+K  PKKQLEPVF+AL+T
Sbjct: 426  MVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDT 485

Query: 2443 LGNTKWRINKRVLGVIDRIWASGGRLAGLVDRDDVPLPVEPDTEDEAELXXXXXXXXXXX 2264
            LGNTKWR+N++VLG+++RIWASGGRLA LVDR+DVPLP  PDTEDEAE+           
Sbjct: 486  LGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVK 545

Query: 2263 KENSERHSQRCDIELKLSVARKMKDESAFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGAL 2084
            KEN ERHSQRCDIELKL+VARKMKDE  FYYPH++DFRGRAYPMHPYLNHLGSDLCRG L
Sbjct: 546  KENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 605

Query: 2083 EFAEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENHLDDIFDSADRPLEGKRW 1904
            EFAEGRPLG SGLRWLKIH+AN+Y GGVDKLSY+GRV+F+ENHL+DIFDSA+RPLEGKRW
Sbjct: 606  EFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRW 665

Query: 1903 WLEAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAV 1724
            WL AEDPFQCLA CIN++EALRS SPET ISYMP+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAV 725

Query: 1723 NLVAGDKPADVYSGIATRVLEIMQQDAKRDPTNDADALCARLLVNQVNRKLVKQTVMTSV 1544
            NLVAGDKPADVYSGIA RVL+IM++DA +DP ND + + ARLL+NQV+RKLVKQTVMTSV
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSV 785

Query: 1543 YGVTYIGAREQIKKRLKERGVV-DDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGEC 1367
            YGVTYIGAR+QIKKRLKERGV+ DD ELF AACYAAK TLTALGEMF+AAR IMSWLG+C
Sbjct: 786  YGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDC 845

Query: 1366 AKVIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPP 1187
            AK+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPP
Sbjct: 846  AKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPP 905

Query: 1186 NFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILE 1007
            NFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PILE
Sbjct: 906  NFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILE 965

Query: 1006 NLLESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 896
            NLLESFQQSFP L FPPLPERGDFDL EV++SPYFFN
Sbjct: 966  NLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002