BLASTX nr result
ID: Coptis21_contig00010770
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00010770 (626 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|2... 301 8e-80 emb|CBI38027.3| unnamed protein product [Vitis vinifera] 293 2e-77 ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257... 293 2e-77 ref|NP_565513.1| RNA recognition motif-containing protein [Arabi... 286 3e-75 ref|XP_002880379.1| RNA recognition motif-containing protein [Ar... 283 2e-74 >ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|222850181|gb|EEE87728.1| predicted protein [Populus trichocarpa] Length = 974 Score = 301 bits (770), Expect = 8e-80 Identities = 143/194 (73%), Positives = 167/194 (86%) Frame = -2 Query: 583 RKTKTLPIELTDKEDCSEKQKVARTVVFGGLLNADMAEEVLRRAKEVGTVCSITYPLPKE 404 RK L +LTDKE+CSEKQ+VARTV+FGGLLN MAE+V +RAKE GTVCS+TYPLPKE Sbjct: 162 RKPAKLVTDLTDKENCSEKQRVARTVIFGGLLNDAMAEDVHQRAKETGTVCSVTYPLPKE 221 Query: 403 ELELNGLAQDGCRMDGAAVLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWK 224 EL+ +GL QDGCR +AVL+ SVK AR+SV +LHQ+++KGG+VWARQLGGEG KTQKWK Sbjct: 222 ELKKHGLEQDGCRSGASAVLFTSVKEARSSVAMLHQKEIKGGIVWARQLGGEGCKTQKWK 281 Query: 223 LIVRNLPFKATVNEIRILFSSVGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAVQKV 44 LI+RNLPFKA NEI+ +F S G VWDVF+P+NSETGLSKGF FVKFTCK+DAENA+QK Sbjct: 282 LIIRNLPFKAKPNEIKGVFESAGCVWDVFVPHNSETGLSKGFAFVKFTCKQDAENAIQKF 341 Query: 43 NGQTFGKRPIAVDW 2 NGQ FGKRPIAVDW Sbjct: 342 NGQKFGKRPIAVDW 355 >emb|CBI38027.3| unnamed protein product [Vitis vinifera] Length = 918 Score = 293 bits (750), Expect = 2e-77 Identities = 142/195 (72%), Positives = 164/195 (84%) Frame = -2 Query: 586 IRKTKTLPIELTDKEDCSEKQKVARTVVFGGLLNADMAEEVLRRAKEVGTVCSITYPLPK 407 +RK + DK SEKQ+VARTV+FGGLLNADMAE V RA+EVGTVCS+TYPLPK Sbjct: 144 LRKALKPCTDQADKGSFSEKQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPK 203 Query: 406 EELELNGLAQDGCRMDGAAVLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKW 227 EELE +GL+QDGC++D +AVLY SVK A ASV +LHQ+++KGG+VWARQLGGEGSKTQKW Sbjct: 204 EELEHHGLSQDGCKIDASAVLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKW 263 Query: 226 KLIVRNLPFKATVNEIRILFSSVGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAVQK 47 KLIVRNLPFKA V EI+ +FSS GFVWD FIP NSETGLS+GF FVKFT K+DAENA+QK Sbjct: 264 KLIVRNLPFKAKVTEIKDIFSSAGFVWDAFIPQNSETGLSRGFAFVKFTSKQDAENAIQK 323 Query: 46 VNGQTFGKRPIAVDW 2 NG+ GKRPIAVDW Sbjct: 324 FNGEKIGKRPIAVDW 338 >ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257200 [Vitis vinifera] Length = 972 Score = 293 bits (750), Expect = 2e-77 Identities = 142/195 (72%), Positives = 164/195 (84%) Frame = -2 Query: 586 IRKTKTLPIELTDKEDCSEKQKVARTVVFGGLLNADMAEEVLRRAKEVGTVCSITYPLPK 407 +RK + DK SEKQ+VARTV+FGGLLNADMAE V RA+EVGTVCS+TYPLPK Sbjct: 163 LRKALKPCTDQADKGSFSEKQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPK 222 Query: 406 EELELNGLAQDGCRMDGAAVLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKW 227 EELE +GL+QDGC++D +AVLY SVK A ASV +LHQ+++KGG+VWARQLGGEGSKTQKW Sbjct: 223 EELEHHGLSQDGCKIDASAVLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKW 282 Query: 226 KLIVRNLPFKATVNEIRILFSSVGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAVQK 47 KLIVRNLPFKA V EI+ +FSS GFVWD FIP NSETGLS+GF FVKFT K+DAENA+QK Sbjct: 283 KLIVRNLPFKAKVTEIKDIFSSAGFVWDAFIPQNSETGLSRGFAFVKFTSKQDAENAIQK 342 Query: 46 VNGQTFGKRPIAVDW 2 NG+ GKRPIAVDW Sbjct: 343 FNGEKIGKRPIAVDW 357 >ref|NP_565513.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|4567275|gb|AAD23688.1| expressed protein [Arabidopsis thaliana] gi|16604631|gb|AAL24108.1| unknown protein [Arabidopsis thaliana] gi|27754736|gb|AAO22811.1| unknown protein [Arabidopsis thaliana] gi|330252084|gb|AEC07178.1| RNA recognition motif-containing protein [Arabidopsis thaliana] Length = 1003 Score = 286 bits (731), Expect = 3e-75 Identities = 136/194 (70%), Positives = 162/194 (83%) Frame = -2 Query: 583 RKTKTLPIELTDKEDCSEKQKVARTVVFGGLLNADMAEEVLRRAKEVGTVCSITYPLPKE 404 R TK L ++L DKE CS+KQ+VARTV+FGGL NA+MAE V R KE+GTVCS+ YPLPKE Sbjct: 214 RPTK-LHVDLPDKETCSDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKE 272 Query: 403 ELELNGLAQDGCRMDGAAVLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWK 224 EL+ NGL QDGCR + +AVL+ SVK+A A+V LHQ +VKG L+WARQLGGEGSK QKWK Sbjct: 273 ELQQNGLTQDGCRAEASAVLFTSVKSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKWK 332 Query: 223 LIVRNLPFKATVNEIRILFSSVGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAVQKV 44 LI+RNLPF+A ++I+++FS+VGFVWDVFIP N ETGL KGF FVKFTCKKDA NA++K Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392 Query: 43 NGQTFGKRPIAVDW 2 NG FGKRPIAVDW Sbjct: 393 NGHMFGKRPIAVDW 406 >ref|XP_002880379.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297326218|gb|EFH56638.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 988 Score = 283 bits (724), Expect = 2e-74 Identities = 136/200 (68%), Positives = 162/200 (81%), Gaps = 1/200 (0%) Frame = -2 Query: 598 QSKVIRKTKT-LPIELTDKEDCSEKQKVARTVVFGGLLNADMAEEVLRRAKEVGTVCSIT 422 + + RK T L ++L DKE CS+KQ+VARTV+FGGL NA+MAE V R KE+GTVCS+ Sbjct: 189 EKPIERKGPTKLHVDLPDKETCSDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVR 248 Query: 421 YPLPKEELELNGLAQDGCRMDGAAVLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGS 242 YPLPKEEL+ NGL QDGCR + +AVL+ SVK+A A V LHQ ++KG L+WARQLGGEGS Sbjct: 249 YPLPKEELQQNGLTQDGCRAEASAVLFTSVKSACAVVAKLHQTEIKGNLIWARQLGGEGS 308 Query: 241 KTQKWKLIVRNLPFKATVNEIRILFSSVGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAE 62 K QKWKLI+RNLPF+A ++I+ +FS+VGFVWDVFIP N ETGL KGF FVKFTCKKDAE Sbjct: 309 KAQKWKLIIRNLPFQAKPSDIKEVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAE 368 Query: 61 NAVQKVNGQTFGKRPIAVDW 2 NA+Q NG FGKRPIAVDW Sbjct: 369 NAIQMFNGHMFGKRPIAVDW 388