BLASTX nr result

ID: Coptis21_contig00010756 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010756
         (1552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]   662   0.0  
ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana] ...   631   e-178
ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]      629   e-178
ref|XP_004163748.1| PREDICTED: helicase SKI2W-like [Cucumis sati...   625   e-177
ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sati...   625   e-177

>ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
          Length = 1379

 Score =  662 bits (1709), Expect = 0.0
 Identities = 336/524 (64%), Positives = 399/524 (76%), Gaps = 34/524 (6%)
 Frame = +1

Query: 82   MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
            M+R+  G D +F++GFSG+SGHLR+EPLPPVER +PL SLPDFI P AF  ETPE+IK++
Sbjct: 1    MNRIQVGHDASFRVGFSGHSGHLRLEPLPPVERPNPLSSLPDFISPPAFARETPETIKEY 60

Query: 262  WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
             E+ YLLP LD DEFS EK GRQWDFDWFDRAKV LEP+LPR+V+V ++ELPF+R K   
Sbjct: 61   IEDTYLLPRLDPDEFSPEKVGRQWDFDWFDRAKVPLEPSLPRSVVVQKWELPFRRSKKES 120

Query: 436  ----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQK 603
                WEP S E++VS+LM GA ++G  PRM GPAKDF+RGSI NRPFRPGGLD SQS  +
Sbjct: 121  ASGKWEPISEEVEVSDLMVGAQDTGPLPRMVGPAKDFIRGSINNRPFRPGGLDDSQSLDR 180

Query: 604  VVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSEVKSSSDDK 783
            + P GA +G+WV+E+L+GG A V+PP FK GLDLGDL A+ +SWKVYK QS +K  S++ 
Sbjct: 181  IPPLGASNGEWVQEVLNGGPALVVPPSFKQGLDLGDLKAYSHSWKVYKGQSALKGKSEEN 240

Query: 784  LSRISVQFGDLFAKAWEDDIIEESQ----------------------------HRDDAES 879
            L+++S+QF DL  KAWE+D + ES+                            H  +++S
Sbjct: 241  LNKLSIQFDDLLKKAWEEDDVAESKEDGIICTFYILALGTNVCKVTDSWAKSCHSPESDS 300

Query: 880  AKAGIKMEEEGDIPRNVSDTELKKEADLCSSVHDTESLVLDEILSTDTGRSILGSNEISV 1059
             K  ++++E                 +  S+V D ES VLDEILS ++G S  G +  S 
Sbjct: 301  IKLEVQLDE----------------VEASSNVGDLESSVLDEILSVESG-SKPGLDGTSD 343

Query: 1060 PGGPQKKEAWAIASGSESIADRFCELVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAH 1239
             GG QKKEAWA++ G+E IAD F ELVPDMAL+FPFELDTFQKEAIYYLEKG+SVFVAAH
Sbjct: 344  DGGRQKKEAWAVSGGNEGIADHFHELVPDMALDFPFELDTFQKEAIYYLEKGDSVFVAAH 403

Query: 1240 TSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEAS 1419
            TSAGKTVVAEYAFALA+KHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEAS
Sbjct: 404  TSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEAS 463

Query: 1420 CLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWE 1551
            CLIMTTEILRSMLY+GADIIRDIEWVIFDEVHYVNDVERGVVWE
Sbjct: 464  CLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDVERGVVWE 507


>ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana]
            gi|332644703|gb|AEE78224.1| antiviral helicase SKI2
            [Arabidopsis thaliana]
          Length = 1347

 Score =  631 bits (1627), Expect = e-178
 Identities = 319/499 (63%), Positives = 384/499 (76%), Gaps = 9/499 (1%)
 Frame = +1

Query: 82   MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
            M++V+AG ++ F++GFSG+ GHLR+EP    ER D L SLPDF+ P AF  ET ESIKKH
Sbjct: 1    MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60

Query: 262  WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
             EEKYL+P L+ D+FS EK+  QWDFDWF R K+ L+P+LPR+V+VP +ELPF+R+K+  
Sbjct: 61   IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKEDT 120

Query: 436  ----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQK 603
                WEP+S+E+D+SE M G  +SG  PRM GP KDF+RGS+ NRPFRPGGL+ SQS+++
Sbjct: 121  ENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSER 180

Query: 604  VVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSEVKSSSDDK 783
            V+PEG  SGQWV+E+L+GG AQ +PP FK  LDLGDLM +P +W VY+D S   ++SD+ 
Sbjct: 181  VLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDEN 240

Query: 784  LSRISVQFGDLFAKAWEDDIIEESQHRDDAESAKAGIKMEEEGDIPRNVSDTELKKEADL 963
             S++S+QF DLF KAWE+D   E +  DD  +     K E E D   ++S+ E+ K  + 
Sbjct: 241  SSKLSIQFDDLFKKAWEEDTFSELEG-DDHTAGSESPKAEAEPDAKASISN-EVSKGLE- 297

Query: 964  CSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQK---KEAWAIASGSESIADRFCE 1134
                  T+  VLDEILS+   ++ + S E +V G   K   KE WA    S+ IADRF E
Sbjct: 298  ------TDVTVLDEILSS--AKTAIMSEE-AVTGSSDKQLRKEGWATKGDSQDIADRFYE 348

Query: 1135 LVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 1314
            LVPDMA+EFPFELD FQKEAI  LEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVY
Sbjct: 349  LVPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 408

Query: 1315 TAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEW 1494
            TAPIKTISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLYRGADIIRDIEW
Sbjct: 409  TAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEW 468

Query: 1495 VIFDEVHYVNDVERGVVWE 1551
            VIFDEVHYVNDVERGVVWE
Sbjct: 469  VIFDEVHYVNDVERGVVWE 487


>ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
          Length = 1342

 Score =  629 bits (1621), Expect = e-178
 Identities = 328/498 (65%), Positives = 380/498 (76%), Gaps = 8/498 (1%)
 Frame = +1

Query: 82   MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
            MD + A  ++AF++GFSG+SGHLR+EPL   ER +PL+S+PDFI P AF  ETPESIKK+
Sbjct: 1    MDPIQAANELAFRVGFSGHSGHLRLEPLSTEERRNPLRSIPDFIPPPAFPSETPESIKKY 60

Query: 262  WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
             EE YL P LD D+FS EK GRQW+FDWFDRAKV LEP+LPRT++VP +E PF+R  +  
Sbjct: 61   IEETYLQPRLDPDDFSPEKVGRQWEFDWFDRAKVPLEPSLPRTMVVPVWEPPFRRSNNGS 120

Query: 436  ----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQK 603
                WEP+  E+DV++L  GA ESG  PR  G  KDFVRGSI NRPFRPGGLD S+S  +
Sbjct: 121  VKGIWEPKFEEVDVADLTSGAVESGPLPRTSG--KDFVRGSINNRPFRPGGLDDSRSLDR 178

Query: 604  VVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSEVKSSSDDK 783
            ++PEGA +G+WV EIL+GG AQ IPP  K GLD G L  +P SW V K+ + +KSSSD+K
Sbjct: 179  ILPEGASNGEWVHEILNGGPAQTIPPSLKQGLDFGMLKPYPCSWNVCKEANSLKSSSDEK 238

Query: 784  LSRISVQFGDLFAKAWEDDII--EESQHRDDAESAKAGIKMEEEGDIPRNVSDTELKKEA 957
            LS +SVQF DLF KAW++D +  +E  H  + E+    I +E E      V  TE+   A
Sbjct: 239  LSGLSVQFDDLFKKAWDEDAVGDQEDGHLSEVET----ITLEAE------VGTTEVSSRA 288

Query: 958  DLCSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQKKEAWAIASGSESIADRFCEL 1137
                  H++E + LD+ILS D+  S L  +  +   G QKKEAWAI   SE I D F EL
Sbjct: 289  ------HESE-MSLDDILSADSEGSKLHLDGFNDEIGQQKKEAWAIHETSEQIVDSFHEL 341

Query: 1138 VPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 1317
            VPDMALEFPFELD FQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALA+KHCTRAVYT
Sbjct: 342  VPDMALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYT 401

Query: 1318 APIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 1497
            APIKTISNQKYRD CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 402  APIKTISNQKYRDLCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 461

Query: 1498 IFDEVHYVNDVERGVVWE 1551
            IFDEVHYVNDVERGVVWE
Sbjct: 462  IFDEVHYVNDVERGVVWE 479


>ref|XP_004163748.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
          Length = 684

 Score =  625 bits (1613), Expect = e-177
 Identities = 322/501 (64%), Positives = 380/501 (75%), Gaps = 11/501 (2%)
 Frame = +1

Query: 82   MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
            MD ++A  +++F++GFSG+SGHLR+EPL  VER  P++SLPDFILP AF  ETPE+IK +
Sbjct: 1    MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY 60

Query: 262  WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
             EE YL P LD DEFS EK GRQWDFDWF+ AKV L+P+ PR+V+VP + LPF+R K   
Sbjct: 61   IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120

Query: 436  -----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQ 600
                 WEP S ++DVSEL     ESGS PR+PGPAKDFVRGSI NRPFRPGGLD SQS  
Sbjct: 121  AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180

Query: 601  KVVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSE--VKSSS 774
            +++P+ A +G+WV E+L+GG AQ IPP  K GLDLGDL  +P SW VY++QS    K+S 
Sbjct: 181  RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP 240

Query: 775  DDKLSRISVQFGDLFAKAWEDDIIEESQHRDDAESAKAGIKMEEEGDIPR--NVSDTELK 948
             + LS +SVQF DLF KAWE+D IE         S + G+     G  P+  ++   +  
Sbjct: 241  IENLSELSVQFDDLFKKAWEEDAIE---------SVEDGVY---SGQSPKAESIKSEDRV 288

Query: 949  KEADLCSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQKKEAWAIASGSESIADRF 1128
            +E +  S         LDEILS ++G   L S++ +  G  QKKEAW +  G E I+ RF
Sbjct: 289  RELEAISIAPAPGISALDEILSLESGGFSLSSDQATEVGA-QKKEAWVVVGGREDISLRF 347

Query: 1129 CELVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRA 1308
             +LVPDMAL+FPFELDTFQKEAIY+LEKG+SVFVAAHTSAGKTVVAEYAFALATKHCTRA
Sbjct: 348  HDLVPDMALDFPFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA 407

Query: 1309 VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 1488
            VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI
Sbjct: 408  VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 467

Query: 1489 EWVIFDEVHYVNDVERGVVWE 1551
            EWVIFDEVHYVND+ERGVVWE
Sbjct: 468  EWVIFDEVHYVNDIERGVVWE 488


>ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
          Length = 1352

 Score =  625 bits (1613), Expect = e-177
 Identities = 322/501 (64%), Positives = 380/501 (75%), Gaps = 11/501 (2%)
 Frame = +1

Query: 82   MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
            MD ++A  +++F++GFSG+SGHLR+EPL  VER  P++SLPDFILP AF  ETPE+IK +
Sbjct: 1    MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY 60

Query: 262  WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
             EE YL P LD DEFS EK GRQWDFDWF+ AKV L+P+ PR+V+VP + LPF+R K   
Sbjct: 61   IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120

Query: 436  -----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQ 600
                 WEP S ++DVSEL     ESGS PR+PGPAKDFVRGSI NRPFRPGGLD SQS  
Sbjct: 121  AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180

Query: 601  KVVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSE--VKSSS 774
            +++P+ A +G+WV E+L+GG AQ IPP  K GLDLGDL  +P SW VY++QS    K+S 
Sbjct: 181  RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP 240

Query: 775  DDKLSRISVQFGDLFAKAWEDDIIEESQHRDDAESAKAGIKMEEEGDIPR--NVSDTELK 948
             + LS +SVQF DLF KAWE+D IE         S + G+     G  P+  ++   +  
Sbjct: 241  IENLSELSVQFDDLFKKAWEEDAIE---------SVEDGVY---SGQSPKAESIKSEDRV 288

Query: 949  KEADLCSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQKKEAWAIASGSESIADRF 1128
            +E +  S         LDEILS ++G   L S++ +  G  QKKEAW +  G E I+ RF
Sbjct: 289  RELEAISIAPAPGISALDEILSLESGGFSLSSDQATEVGA-QKKEAWVVVGGREDISLRF 347

Query: 1129 CELVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRA 1308
             +LVPDMAL+FPFELDTFQKEAIY+LEKG+SVFVAAHTSAGKTVVAEYAFALATKHCTRA
Sbjct: 348  HDLVPDMALDFPFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA 407

Query: 1309 VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 1488
            VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI
Sbjct: 408  VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 467

Query: 1489 EWVIFDEVHYVNDVERGVVWE 1551
            EWVIFDEVHYVND+ERGVVWE
Sbjct: 468  EWVIFDEVHYVNDIERGVVWE 488


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