BLASTX nr result
ID: Coptis21_contig00010756
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00010756
(1552 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera] 662 0.0
ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana] ... 631 e-178
ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max] 629 e-178
ref|XP_004163748.1| PREDICTED: helicase SKI2W-like [Cucumis sati... 625 e-177
ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sati... 625 e-177
>ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
Length = 1379
Score = 662 bits (1709), Expect = 0.0
Identities = 336/524 (64%), Positives = 399/524 (76%), Gaps = 34/524 (6%)
Frame = +1
Query: 82 MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
M+R+ G D +F++GFSG+SGHLR+EPLPPVER +PL SLPDFI P AF ETPE+IK++
Sbjct: 1 MNRIQVGHDASFRVGFSGHSGHLRLEPLPPVERPNPLSSLPDFISPPAFARETPETIKEY 60
Query: 262 WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
E+ YLLP LD DEFS EK GRQWDFDWFDRAKV LEP+LPR+V+V ++ELPF+R K
Sbjct: 61 IEDTYLLPRLDPDEFSPEKVGRQWDFDWFDRAKVPLEPSLPRSVVVQKWELPFRRSKKES 120
Query: 436 ----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQK 603
WEP S E++VS+LM GA ++G PRM GPAKDF+RGSI NRPFRPGGLD SQS +
Sbjct: 121 ASGKWEPISEEVEVSDLMVGAQDTGPLPRMVGPAKDFIRGSINNRPFRPGGLDDSQSLDR 180
Query: 604 VVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSEVKSSSDDK 783
+ P GA +G+WV+E+L+GG A V+PP FK GLDLGDL A+ +SWKVYK QS +K S++
Sbjct: 181 IPPLGASNGEWVQEVLNGGPALVVPPSFKQGLDLGDLKAYSHSWKVYKGQSALKGKSEEN 240
Query: 784 LSRISVQFGDLFAKAWEDDIIEESQ----------------------------HRDDAES 879
L+++S+QF DL KAWE+D + ES+ H +++S
Sbjct: 241 LNKLSIQFDDLLKKAWEEDDVAESKEDGIICTFYILALGTNVCKVTDSWAKSCHSPESDS 300
Query: 880 AKAGIKMEEEGDIPRNVSDTELKKEADLCSSVHDTESLVLDEILSTDTGRSILGSNEISV 1059
K ++++E + S+V D ES VLDEILS ++G S G + S
Sbjct: 301 IKLEVQLDE----------------VEASSNVGDLESSVLDEILSVESG-SKPGLDGTSD 343
Query: 1060 PGGPQKKEAWAIASGSESIADRFCELVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAH 1239
GG QKKEAWA++ G+E IAD F ELVPDMAL+FPFELDTFQKEAIYYLEKG+SVFVAAH
Sbjct: 344 DGGRQKKEAWAVSGGNEGIADHFHELVPDMALDFPFELDTFQKEAIYYLEKGDSVFVAAH 403
Query: 1240 TSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEAS 1419
TSAGKTVVAEYAFALA+KHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEAS
Sbjct: 404 TSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEAS 463
Query: 1420 CLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWE 1551
CLIMTTEILRSMLY+GADIIRDIEWVIFDEVHYVNDVERGVVWE
Sbjct: 464 CLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDVERGVVWE 507
>ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana]
gi|332644703|gb|AEE78224.1| antiviral helicase SKI2
[Arabidopsis thaliana]
Length = 1347
Score = 631 bits (1627), Expect = e-178
Identities = 319/499 (63%), Positives = 384/499 (76%), Gaps = 9/499 (1%)
Frame = +1
Query: 82 MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
M++V+AG ++ F++GFSG+ GHLR+EP ER D L SLPDF+ P AF ET ESIKKH
Sbjct: 1 MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60
Query: 262 WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
EEKYL+P L+ D+FS EK+ QWDFDWF R K+ L+P+LPR+V+VP +ELPF+R+K+
Sbjct: 61 IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKEDT 120
Query: 436 ----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQK 603
WEP+S+E+D+SE M G +SG PRM GP KDF+RGS+ NRPFRPGGL+ SQS+++
Sbjct: 121 ENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSER 180
Query: 604 VVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSEVKSSSDDK 783
V+PEG SGQWV+E+L+GG AQ +PP FK LDLGDLM +P +W VY+D S ++SD+
Sbjct: 181 VLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDEN 240
Query: 784 LSRISVQFGDLFAKAWEDDIIEESQHRDDAESAKAGIKMEEEGDIPRNVSDTELKKEADL 963
S++S+QF DLF KAWE+D E + DD + K E E D ++S+ E+ K +
Sbjct: 241 SSKLSIQFDDLFKKAWEEDTFSELEG-DDHTAGSESPKAEAEPDAKASISN-EVSKGLE- 297
Query: 964 CSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQK---KEAWAIASGSESIADRFCE 1134
T+ VLDEILS+ ++ + S E +V G K KE WA S+ IADRF E
Sbjct: 298 ------TDVTVLDEILSS--AKTAIMSEE-AVTGSSDKQLRKEGWATKGDSQDIADRFYE 348
Query: 1135 LVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 1314
LVPDMA+EFPFELD FQKEAI LEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVY
Sbjct: 349 LVPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 408
Query: 1315 TAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEW 1494
TAPIKTISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLYRGADIIRDIEW
Sbjct: 409 TAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEW 468
Query: 1495 VIFDEVHYVNDVERGVVWE 1551
VIFDEVHYVNDVERGVVWE
Sbjct: 469 VIFDEVHYVNDVERGVVWE 487
>ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
Length = 1342
Score = 629 bits (1621), Expect = e-178
Identities = 328/498 (65%), Positives = 380/498 (76%), Gaps = 8/498 (1%)
Frame = +1
Query: 82 MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
MD + A ++AF++GFSG+SGHLR+EPL ER +PL+S+PDFI P AF ETPESIKK+
Sbjct: 1 MDPIQAANELAFRVGFSGHSGHLRLEPLSTEERRNPLRSIPDFIPPPAFPSETPESIKKY 60
Query: 262 WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
EE YL P LD D+FS EK GRQW+FDWFDRAKV LEP+LPRT++VP +E PF+R +
Sbjct: 61 IEETYLQPRLDPDDFSPEKVGRQWEFDWFDRAKVPLEPSLPRTMVVPVWEPPFRRSNNGS 120
Query: 436 ----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQK 603
WEP+ E+DV++L GA ESG PR G KDFVRGSI NRPFRPGGLD S+S +
Sbjct: 121 VKGIWEPKFEEVDVADLTSGAVESGPLPRTSG--KDFVRGSINNRPFRPGGLDDSRSLDR 178
Query: 604 VVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSEVKSSSDDK 783
++PEGA +G+WV EIL+GG AQ IPP K GLD G L +P SW V K+ + +KSSSD+K
Sbjct: 179 ILPEGASNGEWVHEILNGGPAQTIPPSLKQGLDFGMLKPYPCSWNVCKEANSLKSSSDEK 238
Query: 784 LSRISVQFGDLFAKAWEDDII--EESQHRDDAESAKAGIKMEEEGDIPRNVSDTELKKEA 957
LS +SVQF DLF KAW++D + +E H + E+ I +E E V TE+ A
Sbjct: 239 LSGLSVQFDDLFKKAWDEDAVGDQEDGHLSEVET----ITLEAE------VGTTEVSSRA 288
Query: 958 DLCSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQKKEAWAIASGSESIADRFCEL 1137
H++E + LD+ILS D+ S L + + G QKKEAWAI SE I D F EL
Sbjct: 289 ------HESE-MSLDDILSADSEGSKLHLDGFNDEIGQQKKEAWAIHETSEQIVDSFHEL 341
Query: 1138 VPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 1317
VPDMALEFPFELD FQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALA+KHCTRAVYT
Sbjct: 342 VPDMALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYT 401
Query: 1318 APIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 1497
APIKTISNQKYRD CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 402 APIKTISNQKYRDLCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 461
Query: 1498 IFDEVHYVNDVERGVVWE 1551
IFDEVHYVNDVERGVVWE
Sbjct: 462 IFDEVHYVNDVERGVVWE 479
>ref|XP_004163748.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
Length = 684
Score = 625 bits (1613), Expect = e-177
Identities = 322/501 (64%), Positives = 380/501 (75%), Gaps = 11/501 (2%)
Frame = +1
Query: 82 MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
MD ++A +++F++GFSG+SGHLR+EPL VER P++SLPDFILP AF ETPE+IK +
Sbjct: 1 MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY 60
Query: 262 WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
EE YL P LD DEFS EK GRQWDFDWF+ AKV L+P+ PR+V+VP + LPF+R K
Sbjct: 61 IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120
Query: 436 -----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQ 600
WEP S ++DVSEL ESGS PR+PGPAKDFVRGSI NRPFRPGGLD SQS
Sbjct: 121 AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180
Query: 601 KVVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSE--VKSSS 774
+++P+ A +G+WV E+L+GG AQ IPP K GLDLGDL +P SW VY++QS K+S
Sbjct: 181 RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP 240
Query: 775 DDKLSRISVQFGDLFAKAWEDDIIEESQHRDDAESAKAGIKMEEEGDIPR--NVSDTELK 948
+ LS +SVQF DLF KAWE+D IE S + G+ G P+ ++ +
Sbjct: 241 IENLSELSVQFDDLFKKAWEEDAIE---------SVEDGVY---SGQSPKAESIKSEDRV 288
Query: 949 KEADLCSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQKKEAWAIASGSESIADRF 1128
+E + S LDEILS ++G L S++ + G QKKEAW + G E I+ RF
Sbjct: 289 RELEAISIAPAPGISALDEILSLESGGFSLSSDQATEVGA-QKKEAWVVVGGREDISLRF 347
Query: 1129 CELVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRA 1308
+LVPDMAL+FPFELDTFQKEAIY+LEKG+SVFVAAHTSAGKTVVAEYAFALATKHCTRA
Sbjct: 348 HDLVPDMALDFPFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA 407
Query: 1309 VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 1488
VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI
Sbjct: 408 VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 467
Query: 1489 EWVIFDEVHYVNDVERGVVWE 1551
EWVIFDEVHYVND+ERGVVWE
Sbjct: 468 EWVIFDEVHYVNDIERGVVWE 488
>ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
Length = 1352
Score = 625 bits (1613), Expect = e-177
Identities = 322/501 (64%), Positives = 380/501 (75%), Gaps = 11/501 (2%)
Frame = +1
Query: 82 MDRVDAGTDIAFKIGFSGYSGHLRIEPLPPVERYDPLKSLPDFILPSAFQPETPESIKKH 261
MD ++A +++F++GFSG+SGHLR+EPL VER P++SLPDFILP AF ETPE+IK +
Sbjct: 1 MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY 60
Query: 262 WEEKYLLPELDKDEFSVEKSGRQWDFDWFDRAKVHLEPTLPRTVIVPEYELPFKRRKD-- 435
EE YL P LD DEFS EK GRQWDFDWF+ AKV L+P+ PR+V+VP + LPF+R K
Sbjct: 61 IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120
Query: 436 -----WEPRSMEMDVSELMEGAHESGSTPRMPGPAKDFVRGSIGNRPFRPGGLDVSQSAQ 600
WEP S ++DVSEL ESGS PR+PGPAKDFVRGSI NRPFRPGGLD SQS
Sbjct: 121 AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180
Query: 601 KVVPEGARSGQWVREILDGGSAQVIPPGFKHGLDLGDLMAHPYSWKVYKDQSE--VKSSS 774
+++P+ A +G+WV E+L+GG AQ IPP K GLDLGDL +P SW VY++QS K+S
Sbjct: 181 RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP 240
Query: 775 DDKLSRISVQFGDLFAKAWEDDIIEESQHRDDAESAKAGIKMEEEGDIPR--NVSDTELK 948
+ LS +SVQF DLF KAWE+D IE S + G+ G P+ ++ +
Sbjct: 241 IENLSELSVQFDDLFKKAWEEDAIE---------SVEDGVY---SGQSPKAESIKSEDRV 288
Query: 949 KEADLCSSVHDTESLVLDEILSTDTGRSILGSNEISVPGGPQKKEAWAIASGSESIADRF 1128
+E + S LDEILS ++G L S++ + G QKKEAW + G E I+ RF
Sbjct: 289 RELEAISIAPAPGISALDEILSLESGGFSLSSDQATEVGA-QKKEAWVVVGGREDISLRF 347
Query: 1129 CELVPDMALEFPFELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRA 1308
+LVPDMAL+FPFELDTFQKEAIY+LEKG+SVFVAAHTSAGKTVVAEYAFALATKHCTRA
Sbjct: 348 HDLVPDMALDFPFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA 407
Query: 1309 VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 1488
VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI
Sbjct: 408 VYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDI 467
Query: 1489 EWVIFDEVHYVNDVERGVVWE 1551
EWVIFDEVHYVND+ERGVVWE
Sbjct: 468 EWVIFDEVHYVNDIERGVVWE 488