BLASTX nr result

ID: Coptis21_contig00010694 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010694
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266319.2| PREDICTED: RING-H2 finger protein ATL7-like ...    60   8e-07
ref|XP_003605368.1| RING finger family protein [Medicago truncat...    59   2e-06
ref|XP_002521749.1| protein with unknown function [Ricinus commu...    57   4e-06

>ref|XP_002266319.2| PREDICTED: RING-H2 finger protein ATL7-like [Vitis vinifera]
           gi|297734760|emb|CBI16994.3| unnamed protein product
           [Vitis vinifera]
          Length = 221

 Score = 59.7 bits (143), Expect = 8e-07
 Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
 Frame = -1

Query: 826 RVDWSSSLQMRASYLNNNPR---LSESGLKKELREMLPIIVFRESFSIRDTQ 680
           RVDW+S L+MR+S  N+      +SE GLKKE+REMLPIIVF+ESFS+ DTQ
Sbjct: 49  RVDWAS-LRMRSSMQNDADHASGVSELGLKKEVREMLPIIVFKESFSVSDTQ 99


>ref|XP_003605368.1| RING finger family protein [Medicago truncatula]
           gi|355506423|gb|AES87565.1| RING finger family protein
           [Medicago truncatula]
          Length = 226

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
 Frame = -1

Query: 826 RVDWSSSLQMRASYL-----NNNPRLSESGLKKELREMLPIIVFRESFSIRDTQ 680
           RVDWSS      S L     NN    S+ GLKKELREMLPIIV+ ESFS++DTQ
Sbjct: 56  RVDWSSIRMRSVSVLQHHHNNNATSTSDLGLKKELREMLPIIVYNESFSVKDTQ 109


>ref|XP_002521749.1| protein with unknown function [Ricinus communis]
           gi|223538962|gb|EEF40559.1| protein with unknown
           function [Ricinus communis]
          Length = 337

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 31/50 (62%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
 Frame = -1

Query: 826 RVDWSSSLQMRASYL-NNNPRLSESGLKKELREMLPIIVFRESFSIRDTQ 680
           RVDW+S L+MRA+   ++N   +E GLKKE+REMLPIIV++ESFS++DTQ
Sbjct: 57  RVDWAS-LRMRANLQGSDNIFRAELGLKKEVREMLPIIVYKESFSVKDTQ 105


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