BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010640
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...   149   2e-36
ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...   145   2e-36
ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containi...   150   2e-36
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...   140   2e-34
ref|XP_002889556.1| pentatricopeptide repeat-containing protein ...   136   8e-33

>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score =  149 bits (375), Expect(2) = 2e-36
 Identities = 71/127 (55%), Positives = 87/127 (68%)
 Frame = +1

Query: 73  STVPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVE 252
           ++VP    Y +++KGLCD G S   + YL +MAKQVG VA++E Y +LVDGLCR+ RFVE
Sbjct: 362 NSVPNVRLYNVLLKGLCDAGNSAIAVSYLKRMAKQVGCVANQETYGILVDGLCRDGRFVE 421

Query: 253 ACKVFEKMLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQGNCPEVSVWNSLVQ 432
           A KV E+ML   YWP A  +N LI GL S GR YEAV+WLEEM SQ   PE+ VW SLV 
Sbjct: 422 ASKVLEEMLIKSYWPPADTYNILIRGLSSMGRQYEAVIWLEEMVSQDKLPELYVWRSLVT 481

Query: 433 VVCSESI 453
            VC   +
Sbjct: 482 SVCCNMV 488



 Score = 28.9 bits (63), Expect(2) = 2e-36
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 2   LCREGRADAAVQVIGEEMLDDNCV 73
           LCR+GR+  A+ VI  EM++ N V
Sbjct: 341 LCRQGRSGEAINVIEREMVERNSV 364


>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score =  145 bits (365), Expect(2) = 2e-36
 Identities = 72/128 (56%), Positives = 87/128 (67%)
 Frame = +1

Query: 73  STVPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVE 252
           S VPT   Y I++KGLC EGKS   + YL+KMA+QVG VAD+E Y++LVDGLC + RFVE
Sbjct: 362 SCVPTVRLYNIVLKGLCREGKSAFAVGYLEKMARQVGCVADKETYSILVDGLCCDGRFVE 421

Query: 253 ACKVFEKMLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQGNCPEVSVWNSLVQ 432
           A  + E+ML     P    +N LI GLC  GR Y+AV+WLEEM  QG  P VSVW+SLV 
Sbjct: 422 ASGILERMLIRSSSPGVETYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVA 481

Query: 433 VVCSESIE 456
            VCS   E
Sbjct: 482 SVCSNMTE 489



 Score = 32.3 bits (72), Expect(2) = 2e-36
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 2   LCREGRADAAVQVIGEEMLDDNCV 73
           LCR G  + AV+VI EEM++D+CV
Sbjct: 341 LCRCGGVEEAVKVIKEEMVEDSCV 364


>ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Cucumis sativus]
           gi|449526108|ref|XP_004170056.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g05600-like [Cucumis sativus]
          Length = 497

 Score =  150 bits (379), Expect(2) = 2e-36
 Identities = 71/123 (57%), Positives = 89/123 (72%)
 Frame = +1

Query: 79  VPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVEAC 258
           VPT   Y I++KGLCD+GKS   + YL KMAKQVG VA++E Y+ LV GLC E+R++EAC
Sbjct: 364 VPTIALYNIVLKGLCDDGKSTVAMEYLKKMAKQVGLVANKETYSTLVHGLCLENRYIEAC 423

Query: 259 KVFEKMLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQGNCPEVSVWNSLVQVV 438
           KV E+M+   + P +  FN LI GLCS G+ YEAV+WLEEM SQG  P V VWNSLV  +
Sbjct: 424 KVLEEMVIKSFCPCSNTFNTLIKGLCSVGKHYEAVMWLEEMISQGQLPHVCVWNSLVSSL 483

Query: 439 CSE 447
           C +
Sbjct: 484 CCD 486



 Score = 26.9 bits (58), Expect(2) = 2e-36
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 2   LCREGRADAAVQVIGEEMLDDNCV 73
           LC+EG+ D AV+VI EE +   CV
Sbjct: 342 LCKEGKVDDAVKVI-EEQIVGGCV 364



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
 Frame = +1

Query: 79  VPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVEAC 258
           +P++ +Y  M   L +E K+  G + +  M  + G      IY      LC+E +  +A 
Sbjct: 294 IPSSDSYCAMAVDLYNENKTDQGDKVVSHMIAK-GFRPPSLIYEAKAASLCKEGKVDDAV 352

Query: 259 KVFEKMLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQ-GNCPEVSVWNSLVQV 435
           KV E+ +     P+ A +N ++ GLC +G+S  A+ +L++MA Q G       +++LV  
Sbjct: 353 KVIEEQIVGGCVPTIALYNIVLKGLCDDGKSTVAMEYLKKMAKQVGLVANKETYSTLVHG 412

Query: 436 VCSES 450
           +C E+
Sbjct: 413 LCLEN 417


>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  140 bits (354), Expect(2) = 2e-34
 Identities = 66/129 (51%), Positives = 85/129 (65%)
 Frame = +1

Query: 79  VPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVEAC 258
           VP    Y I++KGLCD   S   ++YL +MAKQ G VA++E Y +LV GLC++  F+EA 
Sbjct: 364 VPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCILVHGLCQDGGFIEAS 423

Query: 259 KVFEKMLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQGNCPEVSVWNSLVQVV 438
           ++ E+ML   YWP    FN LI GLCS GR YEA +WLEEM S    PE+SVWNSLV  +
Sbjct: 424 RILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEEMISLDEAPELSVWNSLVTCL 483

Query: 439 CSESIEFYA 465
           CS + +  A
Sbjct: 484 CSNTADIDA 492



 Score = 30.0 bits (66), Expect(2) = 2e-34
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 2   LCREGRADAAVQVIGEEMLDDNCV 73
           LC+EG+   A+ V+  EM++ NCV
Sbjct: 341 LCKEGKVHEAINVLEVEMVEGNCV 364


>ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335398|gb|EFH65815.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 503

 Score =  136 bits (343), Expect(2) = 8e-33
 Identities = 64/126 (50%), Positives = 88/126 (69%)
 Frame = +1

Query: 79  VPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVEAC 258
           +PT   Y +++KGLCDEGKS+  + YL KM+KQV  VA+EE Y  L+DGLCR+S+F+EA 
Sbjct: 365 LPTVGVYNVLIKGLCDEGKSMEAVGYLKKMSKQVSCVANEETYQTLMDGLCRDSQFLEAS 424

Query: 259 KVFEKMLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQGNCPEVSVWNSLVQVV 438
           +V E+ML   ++P    ++ +I GLC   R YEAV+WLEEM SQ   PE SVW +L + V
Sbjct: 425 QVMEEMLIKSHFPGVETYHVMIKGLCDMDRRYEAVMWLEEMVSQDMVPESSVWKALAESV 484

Query: 439 CSESIE 456
           C  +I+
Sbjct: 485 CFCAID 490



 Score = 28.9 bits (63), Expect(2) = 8e-33
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 2   LCREGRADAAVQVIGEEMLDDNCV 73
           LC+ G+ + AV VI +EM++ +C+
Sbjct: 342 LCKAGKLEEAVSVINKEMMEGHCL 365



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
 Frame = +1

Query: 79  VPTATTYKIMVKGLCDEGKSVAGIRYLDKMAKQVG*VADEEIYNVLVDGLCRESRFVEAC 258
           +P+  +Y  M   L +EGK V G   L  M ++ G      IY   V  LC+  +  EA 
Sbjct: 294 IPSLDSYSAMATDLFEEGKLVEGEEVLLAMRRK-GFEPTPFIYGAKVKALCKAGKLEEAV 352

Query: 259 KVFEK--MLGHRYWPSAAAFNRLIGGLCSEGRSYEAVLWLEEMASQGNC-PEVSVWNSLV 429
            V  K  M GH   P+   +N LI GLC EG+S EAV +L++M+ Q +C      + +L+
Sbjct: 353 SVINKEMMEGHCL-PTVGVYNVLIKGLCDEGKSMEAVGYLKKMSKQVSCVANEETYQTLM 411

Query: 430 QVVCSES 450
             +C +S
Sbjct: 412 DGLCRDS 418