BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010596
         (1323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]      177   5e-42
ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arab...   177   7e-42
ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thalia...   168   3e-39
gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]      156   1e-35
ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arab...   152   1e-34

>gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
          Length = 295

 Score =  177 bits (449), Expect = 5e-42
 Identities = 121/349 (34%), Positives = 152/349 (43%), Gaps = 16/349 (4%)
 Frame = -2

Query: 1298 DEMAA--TGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIESDGYRTLSEGESVEFQVEL 1125
            D+ AA  TG V WF+  KGYGFITPD+   E LFVHQSSI SDG+R+L+ GESVE+ + L
Sbjct: 5    DQSAARSTGKVNWFSDGKGYGFITPDDGGDE-LFVHQSSIVSDGFRSLTVGESVEYAITL 63

Query: 1124 ASDGKKTQAVNVLRKGKXXXXXXXTIIE-----CYTCSQVGHIARDCPQKKKILATDGVV 960
             SDG KT+AV V   G                 C+ C ++GH+A+DC   K      G  
Sbjct: 64   GSDG-KTKAVEVTAPGGGSLKNKEISSRGNGGGCFNCGEIGHMAKDCVGGKSF--GGGGR 120

Query: 959  ANGAVIRCYNCKRIGHVARDCLVKSTAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 780
             +G    CYNC  +GH ARDC  +  AG                                
Sbjct: 121  RSGGEGSCYNCGNVGHFARDC--RQNAGGNSVG--------------------------- 151

Query: 779  XXXXXXXXXXXXXXXNEGYGTRDGGCYNCGQHGHRARDCQEKXXXXXXXXXXXXGYVTRD 600
                               G   G CYNCG+ GH A+DC+                 +  
Sbjct: 152  -------------------GGGGGACYNCGEVGHMAKDCRGGSGGNRYGGGGRG---SGG 189

Query: 599  VCCYNCGNPGHRARECTAKESAD-----GQGEGCYNCGDFGHFARDCN----NNNSRXXX 447
              CY CG+ GH AR+C      D     G G  CY CG FGH AR C     +       
Sbjct: 190  EGCYMCGDVGHFARDCRQNVGGDVGGGGGGGNTCYTCGGFGHMARVCTSKRPSGGGGGVG 249

Query: 446  XXXXXXXXGHLARECFNENSGGARRNGGSTSGGNQCYNCKEEGHYARDC 300
                    GHLAR+C    SGG        SG ++C+ C +EGH+AR+C
Sbjct: 250  ACYECGGIGHLARDCDRRGSGGG-------SGSSKCFTCGKEGHFAREC 291


>ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
            lyrata] gi|297331973|gb|EFH62392.1| hypothetical protein
            ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata]
          Length = 299

 Score =  177 bits (448), Expect = 7e-42
 Identities = 121/347 (34%), Positives = 153/347 (44%), Gaps = 14/347 (4%)
 Frame = -2

Query: 1298 DEMAAT--GIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIESDGYRTLSEGESVEFQVEL 1125
            D+ AA   G V WF   KGYGFITPD+   E+LFVHQSSI SDGYR+L+ GESVE+ + L
Sbjct: 3    DQSAARYIGKVNWFGDGKGYGFITPDDGG-EELFVHQSSIVSDGYRSLTVGESVEYSITL 61

Query: 1124 ASDGKKTQAVNVLRKG-----KXXXXXXXTIIECYTCSQVGHIARDCP--QKKKILATDG 966
             SDG KT+AVNV   G     K           C+ C +VGH+A+DC      +     G
Sbjct: 62   GSDG-KTKAVNVTAPGGGSLNKKENSSRGNGGSCFNCGEVGHMAKDCDGGGGGRSYGGGG 120

Query: 965  VVANGAVIRCYNCKRIGHVARDCLVKSTAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 786
               +G    CY C  +GH ARDC  + + G                              
Sbjct: 121  GRRSGGEGTCYVCGDVGHFARDC--RQSGG------------------------------ 148

Query: 785  XXXXXXXXXXXXXXXXXNEGYGTRDGGCYNCGQHGHRARDCQEKXXXXXXXXXXXXGYVT 606
                             N G G   G CY+CG+ GH A+DC+                 +
Sbjct: 149  ----------------GNSGGGGGGGPCYSCGEVGHLAKDCRGGSGGNRYGGGGRG---S 189

Query: 605  RDVCCYNCGNPGHRARECTAKESAD-----GQGEGCYNCGDFGHFARDCNNNNSRXXXXX 441
                CY CG  GH AR+C      +     G G  CY CG  GH AR C +         
Sbjct: 190  GSDGCYLCGGVGHFARDCRQNGGGNVGGGGGGGNTCYTCGGVGHIARVCTSKRP-SGGAC 248

Query: 440  XXXXXXGHLARECFNENSGGARRNGGSTSGGNQCYNCKEEGHYARDC 300
                  GHLAR+C    SG +   GG   G  +C+NC +EGH+AR+C
Sbjct: 249  YECGETGHLARDCDRRGSGSSGGGGGGGGGSGKCFNCGKEGHFAREC 295


>ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thaliana]
            gi|75165198|sp|Q94C69.1|CSP3_ARATH RecName: Full=Cold
            shock domain-containing protein 3; Short=AtCSP3
            gi|14334920|gb|AAK59638.1| putative glycine-rich,
            zinc-finger DNA-binding protein [Arabidopsis thaliana]
            gi|17104541|gb|AAL34159.1| putative glycine-rich,
            zinc-finger DNA-binding protein [Arabidopsis thaliana]
            gi|148726892|dbj|BAF63841.1| cold shock domain protein 3
            [Arabidopsis thaliana] gi|330251603|gb|AEC06697.1| cold
            shock domain protein 3 [Arabidopsis thaliana]
          Length = 301

 Score =  168 bits (425), Expect = 3e-39
 Identities = 118/347 (34%), Positives = 151/347 (43%), Gaps = 14/347 (4%)
 Frame = -2

Query: 1298 DEMAATGI--VKWFNGKKGYGFITPDNKDTEDLFVHQSSIESDGYRTLSEGESVEFQVEL 1125
            D+ AA  I  V WF+  KGYGFITPD+   E+LFVHQSSI SDG+R+L+ GESVE+++ L
Sbjct: 5    DQSAARSIGKVSWFSDGKGYGFITPDDGG-EELFVHQSSIVSDGFRSLTLGESVEYEIAL 63

Query: 1124 ASDGKKTQAVNVLRKG-----KXXXXXXXTIIECYTCSQVGHIARDCP--QKKKILATDG 966
             SDG KT+A+ V   G     K       +   C+ C +VGH+A+DC      K     G
Sbjct: 64   GSDG-KTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGG 122

Query: 965  VVANGAVIRCYNCKRIGHVARDCLVKSTAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 786
               +G    CY C  +GH ARDC  +S  G                              
Sbjct: 123  GRRSGGEGECYMCGDVGHFARDCR-QSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG 181

Query: 785  XXXXXXXXXXXXXXXXXNEGYGTRDGGCYNCGQHGHRARDCQEKXXXXXXXXXXXXGYVT 606
                               G G+   GCY CG  GH ARDC++                 
Sbjct: 182  GNRYGGGG-----------GRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGS------ 224

Query: 605  RDVCCYNCGNPGHRARECTAKESADGQGEG--CYNCGDFGHFARDCNNNNSRXXXXXXXX 432
                CY CG  GH A+ CT+K  + G G G  CY CG  GH ARDC+             
Sbjct: 225  ---TCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD------------- 268

Query: 431  XXXGHLARECFNENSGGARRNGGSTSGG---NQCYNCKEEGHYARDC 300
                              RR  GS+ GG   N+C+ C +EGH+AR+C
Sbjct: 269  ------------------RRGSGSSGGGGGSNKCFICGKEGHFAREC 297


>gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
          Length = 263

 Score =  156 bits (395), Expect = 1e-35
 Identities = 106/315 (33%), Positives = 126/315 (40%), Gaps = 43/315 (13%)
 Frame = -2

Query: 1286 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIESDGYRTLSEGESVEFQVELASDGKK 1107
            +TG V WFN  KGYGFITPD+ D E+LFVHQS+I S+G+R+L+ G+SVEF V   +DG K
Sbjct: 11   STGKVNWFNDSKGYGFITPDD-DGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGTDG-K 68

Query: 1106 TQAVNVLRKGKXXXXXXXTIIE-----------------------------------CYT 1032
            T+AVNV   G                                               CYT
Sbjct: 69   TKAVNVTAPGGAPLHRKEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCYT 128

Query: 1031 CSQVGHIARDCPQKKKILATDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEXXXXXXX 852
            C   GH ARDC QK       G    GA   CYNC   GH ARDC+ KS           
Sbjct: 129  CGDTGHFARDCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDCVQKSVGNVGDR---- 184

Query: 851  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEGYGTRDGG-CYNCGQHGHR 675
                                                       G+  GG CYNCG  GH 
Sbjct: 185  -------------------------------------------GSGGGGVCYNCGGAGHM 201

Query: 674  ARDCQEKXXXXXXXXXXXXGYVTRDVCCYNCGNPGHRARECTAKESADGQGE-------G 516
            ARDC  K                +   CY CG  GH AR+C  + S  G+G         
Sbjct: 202  ARDCPTK---------------RQPGACYECGGTGHMARDCDRRGSGGGRGNAGGGGGGN 246

Query: 515  CYNCGDFGHFARDCN 471
            C+ CG  GHFAR+C+
Sbjct: 247  CFKCGQGGHFARECS 261



 Score =  112 bits (281), Expect = 2e-22
 Identities = 61/143 (42%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
 Frame = -2

Query: 710 GGCYNCGQHGHRARDCQEKXXXXXXXXXXXXGYVTRDVCCYNCGNPGHRARECTAK---- 543
           GGCY CG  GH ARDC +K            G       CYNCGN GH AR+C  K    
Sbjct: 124 GGCYTCGDTGHFARDCVQKSSGNGGSGGERGGAGGE---CYNCGNTGHFARDCVQKSVGN 180

Query: 542 --ESADGQGEGCYNCGDFGHFARDCNNNNSRXXXXXXXXXXXGHLARECFNENSGGARRN 369
             +   G G  CYNCG  GH ARDC     R           GH+AR+C    SGG R N
Sbjct: 181 VGDRGSGGGGVCYNCGGAGHMARDC--PTKRQPGACYECGGTGHMARDCDRRGSGGGRGN 238

Query: 368 GGSTSGGNQCYNCKEEGHYARDC 300
            G   GGN C+ C + GH+AR+C
Sbjct: 239 AGGGGGGN-CFKCGQGGHFAREC 260



 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 43/109 (39%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
 Frame = -2

Query: 593 CYNCGNPGHRARECTAKESADGQGEGCYNCGDFGHFARDCNNNNS----------RXXXX 444
           CY+CG  GH A++C++ +  D    GCY CGD GHFARDC   +S               
Sbjct: 100 CYHCGEVGHMAKDCSSSDRGDRSSGGCYTCGDTGHFARDCVQKSSGNGGSGGERGGAGGE 159

Query: 443 XXXXXXXGHLARECFNENSGGARRNGGSTSGGNQCYNCKEEGHYARDCP 297
                  GH AR+C  ++ G     G  + GG  CYNC   GH ARDCP
Sbjct: 160 CYNCGNTGHFARDCVQKSVGNVGDRG--SGGGGVCYNCGGAGHMARDCP 206



 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = -2

Query: 581 GNPGHRARECTAKESADGQGEGCYNCGDFGHFARDCNNNN--SRXXXXXXXXXXXGHLAR 408
           G P HR +E +++ +   +G  CY+CG+ GH A+DC++++   R           GH AR
Sbjct: 79  GAPLHR-KEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCYTCGDTGHFAR 137

Query: 407 ECFNENSGGARRNGGSTSGGNQCYNCKEEGHYARDC 300
           +C  ++SG     G     G +CYNC   GH+ARDC
Sbjct: 138 DCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDC 173


>ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
            lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein
            ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score =  152 bits (385), Expect = 1e-34
 Identities = 107/309 (34%), Positives = 126/309 (40%), Gaps = 37/309 (11%)
 Frame = -2

Query: 1286 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIESDGYRTLSEGESVEFQVELASDGKK 1107
            +TG V WFN  KGYGFITPD++ +E+LFVHQSSI S+GYR+L+EG+SVEF +   SDG K
Sbjct: 11   STGKVNWFNDSKGYGFITPDDR-SEELFVHQSSIVSEGYRSLAEGDSVEFAITQGSDG-K 68

Query: 1106 TQAVNV-------LRK----------------------------GKXXXXXXXTIIECYT 1032
            T+AV V       L+K                            G            CY 
Sbjct: 69   TKAVEVTALGGGALKKENNSRGNGARRGGGSGCYNCGELGHIGGGSGGGERGSRREGCYN 128

Query: 1031 CSQVGHIARDCPQKKKILATDGVVANGAVIRCYNCKRIGHVARDC-LVKSTAGEXXXXXX 855
            C   GH ARDC QK          A      CYNC  IGH ARDC   K TAG       
Sbjct: 129  CGDAGHFARDCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRS--- 185

Query: 854  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEGYGTRDGGCYNCGQHGHR 675
                                                        G   G CY CG  GH 
Sbjct: 186  --------------------------------------------GGGSGSCYTCGGVGHI 201

Query: 674  ARDCQEKXXXXXXXXXXXXGYVTRDVCCYNCGNPGHRARECTAKES-ADGQGEGCYNCGD 498
            AR+C  K                    CY CG  GH AR+C  + S  +G G  CY+CG 
Sbjct: 202  ARECATKRQPSRG--------------CYQCGGSGHLARDCDQRASGGNGGGNKCYSCGK 247

Query: 497  FGHFARDCN 471
             GHFAR+C+
Sbjct: 248  EGHFARECS 256



 Score =  103 bits (256), Expect = 1e-19
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
 Frame = -2

Query: 728 GYGTRDGG---CYNCGQHGHRARDCQEKXXXXXXXXXXXXGYVTRDVCCYNCGNPGHRAR 558
           G G R GG   CYNCG+ GH                       +R   CYNCG+ GH AR
Sbjct: 90  GNGARRGGGSGCYNCGELGH------------IGGGSGGGERGSRREGCYNCGDAGHFAR 137

Query: 557 ECTAKESADGQG--------EGCYNCGDFGHFARDCNN--------NNSRXXXXXXXXXX 426
           +CT K   +G          +GCYNCGD GHFARDC N         +            
Sbjct: 138 DCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRSGGGSGSCYTCGG 197

Query: 425 XGHLARECFNENS--------GGA--------RRNGGSTSGGNQCYNCKEEGHYARDC 300
            GH+AREC  +          GG+        +R  G   GGN+CY+C +EGH+AR+C
Sbjct: 198 VGHIARECATKRQPSRGCYQCGGSGHLARDCDQRASGGNGGGNKCYSCGKEGHFAREC 255