BLASTX nr result
ID: Coptis21_contig00010523
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00010523 (1574 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g... 188 3e-45 ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g... 179 2e-42 ref|NP_565401.1| F-box protein SKIP23 [Arabidopsis thaliana] gi|... 153 1e-34 ref|XP_002884031.1| hypothetical protein ARALYDRAFT_480586 [Arab... 152 3e-34 ref|XP_004154592.1| PREDICTED: F-box protein SKIP23-like [Cucumi... 149 2e-33 >ref|XP_002305539.1| f-box family protein [Populus trichocarpa] gi|222848503|gb|EEE86050.1| f-box family protein [Populus trichocarpa] Length = 469 Score = 188 bits (478), Expect = 3e-45 Identities = 133/479 (27%), Positives = 224/479 (46%), Gaps = 1/479 (0%) Frame = +2 Query: 104 DWSQLPEDMLAKVSTNLDNHIEFLQFRAVCHSWRCSTSLVPTSPAGVELPYPIIPAPNPF 283 +W+ LP+D++ +S LD + L+FR+VC+SWR S +P P P + N F Sbjct: 3 EWTHLPKDLMELISKRLDTSTDLLRFRSVCNSWR---SSIP--------PEPPCLSSNTF 51 Query: 284 -IIHNIHFTDTHFHSQVNDQHNVXXXXXXXXXXXXXXXXIMNMVTPPDFYCDYQQENRIG 460 I+ N + T F Sbjct: 52 KILPNDGISHTSFG---------------------------------------------- 65 Query: 461 SCMLTLVEHTIYAVQPLHQPEAQSSSSPKGWIIKVKETRPNVFQFLEPLSGCPIKVLPNS 640 +L + T++ V P + + + +GW+IK++E P +PLS C LPN+ Sbjct: 66 ---FSLFKRTVFLVG---LPNSHNQTDTQGWLIKIEEDVPGKKHLFDPLSRCRSTSLPNN 119 Query: 641 FPKMLNTLDFKIYVIGKEYHLEKAESEREGRKAKQSMDHFGVRKLVFSRAATSSDFVVMA 820 P++L+ ++ +I +G EY L + + + + + K+V + ++FV++ Sbjct: 120 LPRVLDLMNLRIRELGHEYVLHHLNYKPNSSSFTDAGNLY-MEKVVMIWLNSLTEFVLLT 178 Query: 821 IHSSGKLVLFRSGDKNWSVIEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNLSLVT 1000 IH SGKL +F+SGDK W++I F D+I Y+G+FYAV+ +GRT +V T NL LV Sbjct: 179 IHVSGKLAIFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVVAMDT-NLGLVG 237 Query: 1001 HSFLHGGNKVCFLESRGNLYVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKG 1180 + + GG+K +ES+G+L ++ ++ + + +E L++G ++ Sbjct: 238 NP-VFGGDKKYLVESKGDLLLVDMYLS------------------IDSDEGLSIGHDVVQ 278 Query: 1181 IPTQICSIHKAMKCNVYKLDDSGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKC 1360 Q S + + V+KL++ G W V L DR+ +G +FS SAS+ L GC+G C Sbjct: 279 DLVQYMS-ERTVWFKVFKLNEEGKCWIEVNDLEDRVLFLGDDLTFSASASE-LSGCKGNC 336 Query: 1361 FLLTHSHFTRQSAFRTNQNFVNQGIGVYNLADGSIRKLDDLPNYPQLFWPPPMWTAPST 1537 F + F + IGV+ L G I L + P+ ++FWPPP W A ++ Sbjct: 337 IFFNDDFFYSRGEGDDGSLF-GRDIGVFELESGCIGPLRNFPDNSKMFWPPPDWVASTS 394 >ref|XP_002313690.1| f-box family protein [Populus trichocarpa] gi|222850098|gb|EEE87645.1| f-box family protein [Populus trichocarpa] Length = 410 Score = 179 bits (454), Expect = 2e-42 Identities = 105/340 (30%), Positives = 183/340 (53%) Frame = +2 Query: 518 PEAQSSSSPKGWIIKVKETRPNVFQFLEPLSGCPIKVLPNSFPKMLNTLDFKIYVIGKEY 697 P + + + +GW++K++E P +PLS C L +S P++L+ ++ +I +G EY Sbjct: 79 PNSHNQTDLQGWLVKIEEDVPGKKHLFDPLSRCRSTSLHHSLPRVLDLMNLRIRELGHEY 138 Query: 698 HLEKAESEREGRKAKQSMDHFGVRKLVFSRAATSSDFVVMAIHSSGKLVLFRSGDKNWSV 877 L S + + + + K+V ++FV++ IH SGKL +F+SGDK W++ Sbjct: 139 VLHHV-SYKPNSSSFTDAGNLYMEKVVMIWLNCETEFVLLTIHVSGKLAMFKSGDKRWTI 197 Query: 878 IEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNLSLVTHSFLHGGNKVCFLESRGNL 1057 I F D+I Y+G+FYAV+ +GRT +V T +L LV + GG+K +ES+G+L Sbjct: 198 INEMPSPFDDVIVYKGRFYAVDNTGRTVVVALDT-DLGLVGDP-VFGGDKKYLVESKGDL 255 Query: 1058 YVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKGIPTQICSIHKAMKCNVYKL 1237 ++ ++ + + +E L++G ++ Q S + ++ V+KL Sbjct: 256 LLVDMYLS------------------IDTDEGLSIGNDVVQDLVQYMS-ERTVRFKVFKL 296 Query: 1238 DDSGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKCFLLTHSHFTRQSAFRTNQN 1417 ++ G W VK+L DR+ +G S+FS SAS+ L GC+G C + F + + + Sbjct: 297 NEEGKSWIEVKNLEDRVLFLGDDSTFSASASE-LSGCKGNCIFFEDNFFYSREE-GDDGS 354 Query: 1418 FVNQGIGVYNLADGSIRKLDDLPNYPQLFWPPPMWTAPST 1537 + + IGV+ L G I L + P+Y ++FWPPP W A ++ Sbjct: 355 MIGRDIGVFELESGCIGPLRNFPDYSKMFWPPPDWIASTS 394 >ref|NP_565401.1| F-box protein SKIP23 [Arabidopsis thaliana] gi|122215148|sp|Q3EBZ2.1|SKI23_ARATH RecName: Full=F-box protein SKIP23; AltName: Full=SKP1-interacting partner 23 gi|119935952|gb|ABM06043.1| At2g17030 [Arabidopsis thaliana] gi|330251480|gb|AEC06574.1| F-box protein SKIP23 [Arabidopsis thaliana] Length = 407 Score = 153 bits (387), Expect = 1e-34 Identities = 104/354 (29%), Positives = 176/354 (49%), Gaps = 5/354 (1%) Frame = +2 Query: 476 LVEHTIYAVQPLHQPEAQSSSSPKGWIIKVKETR--PNVFQFLEPLSGCPIK-VLPNSFP 646 L + +I ++P H+P +S S GW+IKV+E P L+PL C + +P +FP Sbjct: 70 LSQRSILLIKP-HEPCIESDSF--GWLIKVEEDLNVPRKVTLLDPL--CDTRNSIPENFP 124 Query: 647 KMLNTLDFKIYVIGKEYHLEKAESEREGRKAKQSMDHFGVRKLVFSRAATSSD--FVVMA 820 ++L+ FK+ +G+E+ L + + ++ + K V D FV++ Sbjct: 125 RVLDMSKFKVRELGREFKLHYFNTVGD------IVESLYLEKAVVKYLDCDGDYKFVLLT 178 Query: 821 IHSSGKLVLFRSGDKNWSVIEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNLSLVT 1000 IH SGKL +FRS D+ W+VI + D++ + G+F+AV+ +GRT +VD + L+LV Sbjct: 179 IHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVA 238 Query: 1001 HSFLHGGNKVCFLESRGNLYVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKG 1180 S + GG+K +ES G + ++ ++ + LE +G P ++E + Sbjct: 239 -SPVFGGDKKFLIESCGEMLLVDMY-----LSLEAVEGDPGFVEEIFEHPAFYMN----- 287 Query: 1181 IPTQICSIHKAMKCNVYKLDDSGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKC 1360 + +K VY+ + + W V L D++ +G S+FS SASD LP C+G Sbjct: 288 --------ERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSS 339 Query: 1361 FLLTHSHFTRQSAFRTNQNFVNQGIGVYNLADGSIRKLDDLPNYPQLFWPPPMW 1522 + F + ++ +GV++ G I + LP Y +LFWPPP W Sbjct: 340 VFFNGNVFNGEDLGAMQ----DRDLGVFDFRSGKIELVQKLPEYAKLFWPPPPW 389 >ref|XP_002884031.1| hypothetical protein ARALYDRAFT_480586 [Arabidopsis lyrata subsp. lyrata] gi|297329871|gb|EFH60290.1| hypothetical protein ARALYDRAFT_480586 [Arabidopsis lyrata subsp. lyrata] Length = 395 Score = 152 bits (383), Expect = 3e-34 Identities = 102/353 (28%), Positives = 172/353 (48%), Gaps = 4/353 (1%) Frame = +2 Query: 476 LVEHTIYAVQPLHQPEAQSSSSPKGWIIKVKETR--PNVFQFLEPLSGCPIKVLPNSFPK 649 L + +I ++P P ++ S GW+IKV+E P L+PL +P +FP Sbjct: 70 LSQRSILLIKPHEPPHNEADSF--GWLIKVEEDLNVPRKVTLLDPLCD-KRNSIPENFPH 126 Query: 650 MLNTLDFKIYVIGKEYHLEKAESEREGRKAKQSMDHFGVRKLV--FSRAATSSDFVVMAI 823 +L+ FK+ +G+E+ L + + ++ + K V + FV++ I Sbjct: 127 VLDMSKFKVRELGREFKLHYFNTVGD------IVESLYLEKAVVKYLDCDVEYKFVLLTI 180 Query: 824 HSSGKLVLFRSGDKNWSVIEYQEDKFQDLIHYRGKFYAVETSGRTYIVDPHTKNLSLVTH 1003 H SGKL +FRS D+ W+VI + D+I + G+F+AV+ +GRT +VD + L+LV Sbjct: 181 HVSGKLAVFRSWDRAWTVINDMPSPYDDVILFDGRFFAVDNNGRTVVVDYSSLKLTLVA- 239 Query: 1004 SFLHGGNKVCFLESRGNLYVISIHANSSPILLELRDGLPNSPRMVWEEEILNLGIEMKGI 1183 S + GG+K +ES G + ++ ++ + LE +G P ++E + Sbjct: 240 SPVFGGDKKFLIESCGEMLLVDMY-----LSLEAVEGDPGFVEEIFEHPAFYMN------ 288 Query: 1184 PTQICSIHKAMKCNVYKLDDSGDEWGSVKSLGDRIFLVGGRSSFSVSASDFLPGCEGKCF 1363 + +K VY+ + + W V L D++ +G S+FS SASD LP C+G Sbjct: 289 -------ERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPTCDGSSV 341 Query: 1364 LLTHSHFTRQSAFRTNQNFVNQGIGVYNLADGSIRKLDDLPNYPQLFWPPPMW 1522 + F + ++ +GV++L G I + LP Y +LFWPPP W Sbjct: 342 FFNGNVFNGEDLGAMQ----DRDLGVFDLRTGKIELVQKLPEYAKLFWPPPPW 390 >ref|XP_004154592.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus] Length = 458 Score = 149 bits (377), Expect = 2e-33 Identities = 101/326 (30%), Positives = 155/326 (47%), Gaps = 1/326 (0%) Frame = +2 Query: 548 GWIIKVKETRPNVFQFLEPLSGCPIKVLPNSFPKMLNTLDFKIYVIGKEYHLEKAESERE 727 GW+IKV+E + + PLS K LP +FPK+LN L+F + + +EY L Sbjct: 84 GWLIKVEEDACGMIKISNPLSKSYFKPLPKNFPKVLNLLNFPVLELCQEYVLHYLNFWPV 143 Query: 728 GRKAKQSMDHFGVRKLVFSRAATSSDFVVMAIHSSGKLVLFRSGDKNWSVIEYQEDKFQD 907 + + D + + S FV++ IH SGKL +F+S D WS I + + D Sbjct: 144 RHRPGDAGDLYREKIAYKCLNYDGSQFVLVTIHVSGKLAMFKSEDGQWSTIHHTALPYDD 203 Query: 908 LIHYRGKFYAVETSGRTYIVDPHTKNLSLVTHSFLHGGNKVCFLESRGNLYVISIHANSS 1087 +I + G+FYAV+ SG T++V+ K ++L+ + GG+K +E G L ++ ++ Sbjct: 204 VILFNGEFYAVDNSGATFLVESQHK-VTLIAEP-VFGGDKKILMECNGELLLVDMYLT-- 259 Query: 1088 PILLELRDGLPNSPRMVWEEEILNLGIEMKGIPTQICSIHKAMKCNVYKLDDSGD-EWGS 1264 V EE G + G PT+ K + V+KL +G +W Sbjct: 260 ----------------VDSEE----GFGLDGEPTEGVLHEKTVGFKVFKLHRNGSKKWTV 299 Query: 1265 VKSLGDRIFLVGGRSSFSVSASDFLPGCEGKCFLLTHSHFTRQSAFRTNQNFVNQGIGVY 1444 V LG+ + +G SFS SAS + GC+G C T + F I ++ Sbjct: 300 VCDLGNTMLFLGENCSFSASASG-VSGCKGNCIFFTDGFLCPN--VDEDDVFKGSDIAIF 356 Query: 1445 NLADGSIRKLDDLPNYPQLFWPPPMW 1522 +L G+I L D P Y +LFWPPP W Sbjct: 357 DLEFGTISPLSDSPMYSRLFWPPPSW 382