BLASTX nr result
ID: Coptis21_contig00009985
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00009985
(1433 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g... 184 4e-44
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei... 180 7e-43
ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ... 179 2e-42
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g... 173 9e-41
emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera] 157 8e-36
>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
gi|222848503|gb|EEE86050.1| f-box family protein [Populus
trichocarpa]
Length = 469
Score = 184 bits (468), Expect = 4e-44
Identities = 139/423 (32%), Positives = 193/423 (45%), Gaps = 15/423 (3%)
Frame = -2
Query: 1384 WSQLPRDLLIEVSKRIHTRFEIIEFRSVCQSWRXXXXXXXXXXXXXXXXXXXIVSQYKVT 1205
W+ LP+DL+ +SKR+ T +++ FRSVC SWR + +K+
Sbjct: 4 WTHLPKDLMELISKRLDTSTDLLRFRSVCNSWRSSIPPEPPCLSS---------NTFKIL 54
Query: 1204 IVTVGANNVASNVSEELRPCPGFCKLVERTFYTIRPNEQQRQPESSSSKNAWLIKVEEET 1025
N+ S+ S GF F PN + + WLIK+EE+
Sbjct: 55 -----PNDGISHTSF------GFSLFKRTVFLVGLPNSHNQ-----TDTQGWLIKIEEDV 98
Query: 1024 PNVVHLFDPLLRCLNGKPTKPFSEVLNLSNFNIYGHCKEYFLARTDMDSRFSPKTGLYNL 845
P HLFDPL RC + VL+L N I EY L + + P + +
Sbjct: 99 PGKKHLFDPLSRCRSTSLPNNLPRVLDLMNLRIRELGHEYVLHHLN----YKPNSSSFT- 153
Query: 844 GGGDVEAQKVVLSSTASYSDIVILALCHS-RLLFFKSGDDTWTKFVIEDHNDSVTDIINY 668
G++ +KVV+ S ++ V+L + S +L FKSGD WT +I + D+I Y
Sbjct: 154 DAGNLYMEKVVMIWLNSLTEFVLLTIHVSGKLAIFKSGDKRWT--IINEMPSPFDDVIVY 211
Query: 667 KGELIAVDDFGKAFVVDPYTLTSKVLTNRVVGDDHEWKRFVESNGQLFLVGMYAE----- 503
KG AVD+ G+ VV T V N V G D ++ VES G L LV MY
Sbjct: 212 KGRFYAVDNTGRTVVVAMDTNLGLV-GNPVFGGDKKY--LVESKGDLLLVDMYLSIDSDE 268
Query: 502 ----EHGPYPPCDSYGRSTPTDCKVFSLDEEKQQWIPVEDLGDRVFLMSPQGSYSISALD 335
H Y KVF L+EE + WI V DL DRV + ++S SA +
Sbjct: 269 GLSIGHDVVQDLVQYMSERTVWFKVFKLNEEGKCWIEVNDLEDRVLFLGDDLTFSASASE 328
Query: 334 FPGCKGNCILFTDYDFFSDHEED---TFSHNIGVFDLKAGTFEEL--VDSSYSLFWPPPT 170
GCKGNCI F D F+S E D F +IGVF+L++G L + +FWPPP
Sbjct: 329 LSGCKGNCIFFNDDFFYSRGEGDDGSLFGRDIGVFELESGCIGPLRNFPDNSKMFWPPPD 388
Query: 169 WIS 161
W++
Sbjct: 389 WVA 391
>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
vinifera]
Length = 387
Score = 180 bits (457), Expect = 7e-43
Identities = 131/419 (31%), Positives = 196/419 (46%), Gaps = 11/419 (2%)
Frame = -2
Query: 1384 WSQLPRDLLIEVSKRIHTRFEIIEFRSVCQSWRXXXXXXXXXXXXXXXXXXXIVSQYKVT 1205
W+ LPRDLL ++KR+ + F+++ FRSVC SWR
Sbjct: 4 WANLPRDLLHLIAKRLDSHFDLLRFRSVCSSWRSSTPSKP-------------------- 43
Query: 1204 IVTVGANNVASNVSEELRPCPGFCKLVERTFYTIRPNEQQRQPES--SSSKNAWLIKVEE 1031
++ S++ + P GF ++ + + R Q P+S ++ N+WLIK+EE
Sbjct: 44 ------RSIFSHLP--ILPTTGFSEITWAFYLSKRSILQLGLPDSRAQTTPNSWLIKIEE 95
Query: 1030 ETPNVVHLFDPLLRCLNGKPTKPFSEVLNLSNFNIYGHCKEYFLARTDMDSRFSPKTGLY 851
+ V+ L +PL F + + S ++ +EY L D + P Y
Sbjct: 96 DPSGVIRLINPLTTFKFRHLPPDFPKTFDFSGLRVFELGQEYVLEYMD----YRPPGNAY 151
Query: 850 NLGGGDVEAQKVVLSSTASYSDIVILALCHSRLLFFKSGDDTWTKFVIEDHNDSVTDIIN 671
G + +KV S ++ +L F+SGD W +I+D D+I
Sbjct: 152 L---GSLYMEKVAFCSGNGDDFWLLTIHLSGKLAMFRSGDKKW--MIIDDMQSPYDDVIF 206
Query: 670 YKGELIAVDDFGKAFVVDPYTLTSKVLT---NRVVGDDHEWKRFVESNGQLFLVGMYAEE 500
+ G+ AVD+ G+ VVD +S V+ + V G D K VES G+L LV Y
Sbjct: 207 FDGKFYAVDNTGRTVVVDVADGSSPVVNLAASSVFGGDK--KVLVESEGELLLVDTYFTM 264
Query: 499 HGPYPPCDSYGRSTPTDCKVFSLDEEKQQWIPVEDLGDRVFLMSPQGSYSISALDFPGCK 320
+ + KVF LD+ +Q+W+ +E LGDR+ + S+S A DF GCK
Sbjct: 265 YHDDDEHVRWMIERMIHFKVFRLDQREQKWVEIESLGDRLLFLGDDSSFSARASDFYGCK 324
Query: 319 GNCILFTDYDFFSDHEEDTFSHN--IGVFDLKAGTFEELVDSSYSLF----WPPPTWIS 161
GN I FT+ FFSD EED S + IGVFDL +G+ L SSY+ + WPPP W+S
Sbjct: 325 GNSICFTNISFFSDAEEDDASRSGTIGVFDLDSGSIGPL--SSYANYSKTIWPPPAWVS 381
>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 405
Score = 179 bits (454), Expect = 2e-42
Identities = 129/416 (31%), Positives = 194/416 (46%), Gaps = 9/416 (2%)
Frame = -2
Query: 1384 WSQLPRDLLIEVSKRIHTRFEIIEFRSVCQSWRXXXXXXXXXXXXXXXXXXXIVSQYKVT 1205
WS LP+DLL +++ R+ TR + + FR VC SW Y +
Sbjct: 8 WSHLPKDLLAKIAGRLDTRIDFLHFRGVCSSWMSSVSPTFPRKNPILSLKLP----YPI- 62
Query: 1204 IVTVGANNVASNVSE-ELRPCPGFCKLVERTFYTIRPNEQQRQPESSSSKNAWLIKVEEE 1028
A+N N+ + + R G L+E T Y ++P Q + SK A L+K+EE
Sbjct: 63 -----ASNANLNICDPDTRNPHGSFSLIESTLYYLQPLRQ-----TPDSKEALLVKLEEP 112
Query: 1027 TPNVVHLFDPLLRCLNGKPTKPFSEVLNLSNFNIYGHCKEYFLARTDMDSRFSPKTGLYN 848
P L D L RC K F +VLN NF + K Y L D+ R P T +
Sbjct: 113 KPGKGRLMDTLSRCAIQHLPKNFPKVLNTLNFRVREVGKAYGLRFFDV--RGKPIT---S 167
Query: 847 LGGGDVEAQKVVLSSTASYSDIVILALCHSRLLFFKSGDDTWTKFVIEDHNDSVTDIINY 668
+ +KV++ S ++++ + RL ++ G++ W+ D+I Y
Sbjct: 168 FEFKSILIKKVIMFSKGDEYGLMMIHI-RGRLALWRLGEEKWSLIDDGAEKSHFDDVIYY 226
Query: 667 KGELIAVDDFGKAFVVDPYTLTSKVLTNRVVGDDHEWKRFVESNGQLFLVGMYAEEH--- 497
KG A+D G+ V+D +L + L + V G K FVES G+LFLV Y ++
Sbjct: 227 KGRFYAIDYKGRIVVIDADSLKATELASPVHGSRGTHKHFVESFGELFLVDKYLDDELQI 286
Query: 496 --GPYPPCDSYGRSTPTDCKVFSLDEEKQQWIPVEDLGDRVFLMSPQGSYSISALDFPGC 323
Y + P +VF EE+Q+W V D+GDRV + ++S+S+ DFPG
Sbjct: 287 FCNDYSDIVADVPDYPVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSLSSTDFPGF 346
Query: 322 KGNCILFTDYDFFSDHEEDTFSHNIGVFDLK---AGTFEELVDSSYSLFWPPPTWI 164
KGNC+ FT D F + ++D + G+FDL+ AG S +FWPPP W+
Sbjct: 347 KGNCVYFTQ-DCFCEEDDDRPGFDAGIFDLEERIAGPLSAFPGYS-KIFWPPPAWL 400
>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
gi|222850098|gb|EEE87645.1| f-box family protein [Populus
trichocarpa]
Length = 410
Score = 173 bits (439), Expect = 9e-41
Identities = 138/423 (32%), Positives = 195/423 (46%), Gaps = 15/423 (3%)
Frame = -2
Query: 1384 WSQLPRDLLIEVSKRIHTRFEIIEFRSVCQSWRXXXXXXXXXXXXXXXXXXXIVSQYKVT 1205
W+ LP+DL+ +SK + T +++ FRSVC SWR + +K+
Sbjct: 4 WTHLPKDLIELISKCLDTSTDLLRFRSVCNSWRSSIPPKSPRLSS---------NTFKIL 54
Query: 1204 IVTVGANNVASNVSEELRPCPGFCKLVERTFYTIRPNEQQRQPESSSSKNAWLIKVEEET 1025
N+ S+ S GF F PN + + WL+K+EE+
Sbjct: 55 -----PNDGISHTSF------GFSLFKRSIFLIGLPNSHNQ-----TDLQGWLVKIEEDV 98
Query: 1024 PNVVHLFDPLLRCLNGKPTKPFSEVLNLSNFNIYGHCKEYFLARTDMDSRFSPKTGLYNL 845
P HLFDPL RC + VL+L N I EY L + P + +
Sbjct: 99 PGKKHLFDPLSRCRSTSLHHSLPRVLDLMNLRIRELGHEYVLHHVS----YKPNSSSFT- 153
Query: 844 GGGDVEAQKVVLSSTASYSDIVILALCHS-RLLFFKSGDDTWTKFVIEDHNDSVTDIINY 668
G++ +KVV+ ++ V+L + S +L FKSGD WT +I + D+I Y
Sbjct: 154 DAGNLYMEKVVMIWLNCETEFVLLTIHVSGKLAMFKSGDKRWT--IINEMPSPFDDVIVY 211
Query: 667 KGELIAVDDFGKAFVVDPYTLTSKVLTNRVVGDDHEWKRFVESNGQLFLVGMYAE---EH 497
KG AVD+ G+ VV T V + V G D ++ VES G L LV MY +
Sbjct: 212 KGRFYAVDNTGRTVVVALDTDLGLV-GDPVFGGDKKY--LVESKGDLLLVDMYLSIDTDE 268
Query: 496 GPYPPCD------SYGRSTPTDCKVFSLDEEKQQWIPVEDLGDRVFLMSPQGSYSISALD 335
G D Y KVF L+EE + WI V++L DRV + ++S SA +
Sbjct: 269 GLSIGNDVVQDLVQYMSERTVRFKVFKLNEEGKSWIEVKNLEDRVLFLGDDSTFSASASE 328
Query: 334 FPGCKGNCILFTDYDFFSDHEEDTFS---HNIGVFDLKAGTFEELVD-SSYS-LFWPPPT 170
GCKGNCI F D F+S E D S +IGVF+L++G L + YS +FWPPP
Sbjct: 329 LSGCKGNCIFFEDNFFYSREEGDDGSMIGRDIGVFELESGCIGPLRNFPDYSKMFWPPPD 388
Query: 169 WIS 161
WI+
Sbjct: 389 WIA 391
>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
Length = 986
Score = 157 bits (396), Expect = 8e-36
Identities = 116/386 (30%), Positives = 178/386 (46%), Gaps = 1/386 (0%)
Frame = -2
Query: 1384 WSQLPRDLLIEVSKRIHTRFEIIEFRSVCQSWRXXXXXXXXXXXXXXXXXXXIVSQYKVT 1205
WS LP+DLL +++ R+ TR + + FR VC SW Y +
Sbjct: 8 WSHLPKDLLAKIAGRLDTRIDFLHFRGVCSSWMSSVSPTFPSKNPLLSLKLP----YPI- 62
Query: 1204 IVTVGANNVASNVSE-ELRPCPGFCKLVERTFYTIRPNEQQRQPESSSSKNAWLIKVEEE 1028
A+N N+ + + R G L+E T Y ++P Q + SK A L+K+EE
Sbjct: 63 -----ASNANLNIXDPDTRNPRGSFSLIESTLYYLQPLRQ-----TPDSKEALLVKLEEP 112
Query: 1027 TPNVVHLFDPLLRCLNGKPTKPFSEVLNLSNFNIYGHCKEYFLARTDMDSRFSPKTGLYN 848
P L D L RC K F +VLN NF + K Y L D+ R P T +
Sbjct: 113 KPGKGRLMDTLSRCAIQHLPKNFPKVLNTLNFRVREVGKAYGLRFFDV--RGKPIT---S 167
Query: 847 LGGGDVEAQKVVLSSTASYSDIVILALCHSRLLFFKSGDDTWTKFVIEDHNDSVTDIINY 668
+ +KV++ S ++++ + RL ++ G++ W+ D+I Y
Sbjct: 168 FEFKSILIKKVIMFSKGDEYGLMMIHI-RGRLALWRLGEEKWSLIDDGAEKSHFDDVIYY 226
Query: 667 KGELIAVDDFGKAFVVDPYTLTSKVLTNRVVGDDHEWKRFVESNGQLFLVGMYAEEHGPY 488
KG A+D G+ V+D +L + L + V G K FVES G+L +V +
Sbjct: 227 KGRFYAIDYKGRIVVIDADSLKATELASPVHGSRGTHKHFVESFGELDIVADVPDY---- 282
Query: 487 PPCDSYGRSTPTDCKVFSLDEEKQQWIPVEDLGDRVFLMSPQGSYSISALDFPGCKGNCI 308
P +VF EE+Q+W V D+GDRV + ++S+S+ DFPG KGNC+
Sbjct: 283 ----------PVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSLSSTDFPGFKGNCV 332
Query: 307 LFTDYDFFSDHEEDTFSHNIGVFDLK 230
FT D F + ++D + G+FDL+
Sbjct: 333 YFTQ-DCFCEEDDDRPGFDAGIFDLE 357
Score = 152 bits (384), Expect = 2e-34
Identities = 118/391 (30%), Positives = 177/391 (45%), Gaps = 6/391 (1%)
Frame = -2
Query: 1384 WSQLPRDLLIEVSKRIHTRFEIIEFRSVCQSWRXXXXXXXXXXXXXXXXXXXIVSQYKVT 1205
WS LP+DLL +++ R+ T + + FR VC SW + K+
Sbjct: 398 WSHLPKDLLAKIAGRLDTXIDFLRFRGVCSSWMSSVSPTFPSKNP--------LLSLKIP 449
Query: 1204 IVTVGANNVASNVSEELRPCPGFC-KLVERTFYTIRPNEQQRQPESSSSKNAWLIKVEEE 1028
N+ N+S+ P P L+E T Y ++P Q + SK A L+K+ E
Sbjct: 450 YPIDSIANL--NISDPDTPNPRVSFSLIESTLYYLQPLRQ-----TPDSKEALLVKLXEP 502
Query: 1027 TPNVVHLFDPLLRCLNGKPTKPFSEVLNLSNFNIYGHCKEYFLARTDMDSRFSPKTGLYN 848
P V L D L R K F +VLN +F + K Y L D+ R P T
Sbjct: 503 KPGKVRLMDTLSRRAIKHLPKNFPKVLNTLDFRVREVGKTYGLRFFDV--RGKPJTRF-- 558
Query: 847 LGGGDVEAQKVVLSSTASYS--DIVILALCHSR--LLFFKSGDDTWTKFVIEDHNDSVTD 680
E + ++++ +S D L + H R L ++ G+ W+ D
Sbjct: 559 ------EFKSILITKLIMFSKGDEYGLMMIHFRGGLALWRLGEKKWSLIDDGAEKSHFDD 612
Query: 679 IINYKGELIAVDDFGKAFVVDPYTLTSKVLTNRVVGDDHEWKRFVESNGQLFLVGMYAEE 500
+I YKG A+D G+ V+D +L + L + V G + FVES G+LFLV Y
Sbjct: 613 VIYYKGRFYAIDYXGRIVVIDADSLKATELASPVHGSRGNHRHFVESFGELFLVDKYVVT 672
Query: 499 H-GPYPPCDSYGRSTPTDCKVFSLDEEKQQWIPVEDLGDRVFLMSPQGSYSISALDFPGC 323
Y S P +VF EE+Q+W V +GDRV + ++S+S+ DFPG
Sbjct: 673 FCNNYSDIVSVVPDYPVHXEVFKFIEEEQKWDWVSGIGDRVLFVDDDRTFSLSSTDFPGF 732
Query: 322 KGNCILFTDYDFFSDHEEDTFSHNIGVFDLK 230
KGNC+ FT+Y F + ++D + G+FDL+
Sbjct: 733 KGNCVYFTEY-XFCEEDDDRPGFDAGIFDLE 762