BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009789
         (1211 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymera...   371   e-100
emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]   363   5e-98
ref|XP_002515912.1| RNA polymerase II mediator complex subunit, ...   352   1e-94
ref|XP_002331927.1| predicted protein [Populus trichocarpa] gi|2...   350   5e-94
ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymera...   348   1e-93

>ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
           subunit 6 [Vitis vinifera]
          Length = 258

 Score =  371 bits (952), Expect = e-100
 Identities = 190/258 (73%), Positives = 205/258 (79%), Gaps = 6/258 (2%)
 Frame = +1

Query: 106 MAGTPLMQQNQTIGNPVLEGAPPV----PGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 273
           MA TP+   N   GNP  +G PP     PGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL
Sbjct: 1   MASTPMAPPNPAAGNPNFDGNPPAVPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 60

Query: 274 SPFYDFSCNNEQLRVRSIHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTP 453
           SPFYD++CNNEQLR+RSIHPLD SHLSKMTG EY L+EVMEPHLFV RKQKRD  EKVTP
Sbjct: 61  SPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTP 120

Query: 454 MLTYYVLDGSIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGESETATLEP 633
           MLTYY+LDGSIYQAPQLCNVF ARIGRALYHISK+FTTAASKLEKIG+VD E+E   LE 
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALES 180

Query: 634 KVGKESIDFKEVKRVDHILASLQRKL-GXXXXXXXXXXXXXXXTSDAEKGSENQQGTETQ 810
           KVGKE+IDFKEV RVD ILASLQRKL                 T++ EKG E QQ  E Q
Sbjct: 181 KVGKETIDFKEVMRVDQILASLQRKLPPAPPPPQFPEGYAPPPTAEGEKGPETQQAAEPQ 240

Query: 811 LP-LDPIIDQGPSKRIKY 861
           LP LDPIIDQGPSKR+K+
Sbjct: 241 LPALDPIIDQGPSKRMKF 258


>emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]
          Length = 253

 Score =  363 bits (932), Expect = 5e-98
 Identities = 186/249 (74%), Positives = 200/249 (80%), Gaps = 6/249 (2%)
 Frame = +1

Query: 133 NQTIGNPVLEGAPPV----PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCN 300
           N   GNP  +G PP     PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD++CN
Sbjct: 5   NPAAGNPNFDGNPPAAPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCN 64

Query: 301 NEQLRVRSIHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDG 480
           NEQLR+RSIHPLD SHLSKMTG EY L+EVMEPHLFV RKQKRD  EKVTPMLTYY+LDG
Sbjct: 65  NEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYYILDG 124

Query: 481 SIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGESETATLEPKVGKESIDF 660
           SIYQAPQLCNVF ARIGRALYHISK+FTTAASKLEKIG+VD E+E   LE KVGKE+IDF
Sbjct: 125 SIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALESKVGKETIDF 184

Query: 661 KEVKRVDHILASLQRKL-GXXXXXXXXXXXXXXXTSDAEKGSENQQGTETQLP-LDPIID 834
           KEV RVD ILASLQRKL                 T++ EKG E QQ  E QLP LDPIID
Sbjct: 185 KEVMRVDQILASLQRKLPPAPPAPQFPEGYAPPPTAEGEKGPETQQAAEPQLPALDPIID 244

Query: 835 QGPSKRIKY 861
           QGPSKR+K+
Sbjct: 245 QGPSKRMKF 253


>ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
           communis] gi|223544817|gb|EEF46332.1| RNA polymerase II
           mediator complex subunit, putative [Ricinus communis]
          Length = 251

 Score =  352 bits (903), Expect = 1e-94
 Identities = 178/241 (73%), Positives = 200/241 (82%), Gaps = 2/241 (0%)
 Frame = +1

Query: 145 GNPVLEGAPPVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQLRVRS 324
           GNP+    P  PGTDMTGICFRDQLWLN+YPLDRNL+FDYFALSPFYD++CNNEQLR++S
Sbjct: 12  GNPLAPAPPQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRLQS 71

Query: 325 IHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDGSIYQAPQL 504
           IHPLD+SHLSKMTG EY L+EV+EP+LFV RKQKRD+ EKVTPMLTYYVLDGSIYQAPQL
Sbjct: 72  IHPLDLSHLSKMTGTEYMLNEVIEPNLFVIRKQKRDSPEKVTPMLTYYVLDGSIYQAPQL 131

Query: 505 CNVFAARIGRALYHISKSFTTAASKLEKIGFVDGESETATLEPKVGKESIDFKEVKRVDH 684
           CNVFAARIGRALYHISK+FTTAASKLEKIG+VD E E    E KVGKE IDFKEVKR+DH
Sbjct: 132 CNVFAARIGRALYHISKAFTTAASKLEKIGYVD-EGEGVASESKVGKEVIDFKEVKRIDH 190

Query: 685 ILASLQRKL-GXXXXXXXXXXXXXXXTSDAEKGSENQQGTETQ-LPLDPIIDQGPSKRIK 858
           ILAS+QRKL                 T +AEKGSE +Q  ETQ  P+DPIIDQGP+KR+K
Sbjct: 191 ILASIQRKLPPAPPPPPFPEGYVPPATVEAEKGSETRQAVETQPPPVDPIIDQGPAKRMK 250

Query: 859 Y 861
           +
Sbjct: 251 F 251


>ref|XP_002331927.1| predicted protein [Populus trichocarpa] gi|222874599|gb|EEF11730.1|
           predicted protein [Populus trichocarpa]
          Length = 235

 Score =  350 bits (897), Expect = 5e-94
 Identities = 176/230 (76%), Positives = 195/230 (84%), Gaps = 2/230 (0%)
 Frame = +1

Query: 178 PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQLRVRSIHPLDISHLSK 357
           PGTDMTGICFRDQLWLN+YPLDRNLVFDYFALSPFYD++CNNEQLR +SIHPLD+SHL K
Sbjct: 6   PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRSQSIHPLDLSHLLK 65

Query: 358 MTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDGSIYQAPQLCNVFAARIGRA 537
           MTG EY LSEVMEPHLFVFRKQKRD+AEKVTPMLTYYVLDGSIYQAPQLC+VFAAR+GRA
Sbjct: 66  MTGTEYMLSEVMEPHLFVFRKQKRDSAEKVTPMLTYYVLDGSIYQAPQLCSVFAARVGRA 125

Query: 538 LYHISKSFTTAASKLEKIGFVDGESETATLEPKVGKESIDFKEVKRVDHILASLQRKL-G 714
           LY+ISK+F TAASKLEKIG+VD E+E A  E K GKE IDFKEVKR+DHILASLQRKL  
Sbjct: 126 LYYISKAFGTAASKLEKIGYVDSENEGAASESKTGKEVIDFKEVKRIDHILASLQRKLPP 185

Query: 715 XXXXXXXXXXXXXXXTSDAEKGSENQQGTETQLP-LDPIIDQGPSKRIKY 861
                          T++ EKG E QQG E QLP +DPIIDQGP+KR+K+
Sbjct: 186 APPPPSFPEGYVPQPTTEEEKGPETQQGGEPQLPSVDPIIDQGPAKRMKF 235


>ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymerase II transcription
           subunit 6-like [Glycine max]
          Length = 252

 Score =  348 bits (894), Expect = 1e-93
 Identities = 180/247 (72%), Positives = 200/247 (80%), Gaps = 8/247 (3%)
 Frame = +1

Query: 145 GNPVLEG---APPVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQLR 315
           GN +LEG   AP  PGTDMTGICFRDQLWLNS+PLDRNLVFDYFALSPFYD++CNNEQLR
Sbjct: 6   GNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLR 65

Query: 316 VRSIHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDGSIYQA 495
           +RS+HPLDIS LSKMTG EY LSEVMEPHLFV RKQKRD+ +KVTPML YYVLDGSIYQA
Sbjct: 66  MRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQA 125

Query: 496 PQLCNVFAARIGRALYHISKSFTTAASKLEKIGF---VDGESETATLEPKVGKESIDFKE 666
           PQLCNVFAARIGRALY+I K+FTTAASKLEKIG+    D E+ETA LE K  KE+ID KE
Sbjct: 126 PQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSADSENETALLESKTAKETIDIKE 185

Query: 667 VKRVDHILASLQRKL-GXXXXXXXXXXXXXXXTSDAEKGSENQQGTETQLP-LDPIIDQG 840
           VKRVDHILASLQRKL                 T++ EKG+E Q+  ETQ P  DPIIDQG
Sbjct: 186 VKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQG 245

Query: 841 PSKRIKY 861
           P+KR+K+
Sbjct: 246 PAKRMKF 252