BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009596
         (2352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...  1171   0.0  
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]  1166   0.0  
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...  1139   0.0  
ref|XP_002529848.1| DNA repair and recombination protein RAD26, ...  1134   0.0  
ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thal...  1118   0.0  

>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score = 1171 bits (3030), Expect = 0.0
 Identities = 590/787 (74%), Positives = 663/787 (84%), Gaps = 5/787 (0%)
 Frame = +2

Query: 5    SRRTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTHPFRRXXX 184
            SR  +PEE DK DD+ASA++ARAV+S+S++AQARPTTKLLD++ LPKLDAP+HPF R   
Sbjct: 250  SRDNLPEEGDKIDDLASASIARAVQSISESAQARPTTKLLDSETLPKLDAPSHPFHRLKK 309

Query: 185  XXXXXXXXDTETEKKKDRSRKHKRPLPDKKWRKAASREVELSEGSDEARDNLTTSDNEEE 364
                    D+E EK KD+ RK KRPLP KKWRK  S E EL E S++  DNL TS NEE 
Sbjct: 310  PLKYPLPLDSEVEKNKDKKRKKKRPLPSKKWRKIISHEEELLEESEDTSDNLVTSSNEEV 369

Query: 365  NL-GVEGADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMG 541
            N   +E ADD+EP  VTL+GGL+IPE IFSKLFDYQKVGVQWLWELHCQ+ GGIIGDEMG
Sbjct: 370  NREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWELHCQQVGGIIGDEMG 429

Query: 542  LGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHDSAQVPSN 721
            LGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA+KWY  F VEILHDSAQ P++
Sbjct: 430  LGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWYQSFHVEILHDSAQDPAS 489

Query: 722  RKGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLITTYEQLR 901
            RK R +S ES    E SLDSD+E +LS         WD LI RVLRS+SGLLITTYEQ+R
Sbjct: 490  RKKRAKSYES----EDSLDSDDEENLSSKDTKK---WDSLINRVLRSQSGLLITTYEQIR 542

Query: 902  LLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLF 1081
            L  GKLLDI+WGYA+LDEGHRIRNPNAE+T++CKQLQTVHRIIMTGAPIQNKLAELWSLF
Sbjct: 543  LQAGKLLDIKWGYAILDEGHRIRNPNAEVTILCKQLQTVHRIIMTGAPIQNKLAELWSLF 602

Query: 1082 DFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKAD 1261
            DFVFPGKLGVLPVFEAEFAVPISVGGY+NATPLQVSTAYRCAVVLRDLIMPYLLRRMKAD
Sbjct: 603  DFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKAD 662

Query: 1262 VNAHLPKKTEHVLFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDL 1441
            VNA LP KTEHVLFCSLT EQRS+YR+FLASSEVEQIFDG+RNSLYGIDVMRKICNHPDL
Sbjct: 663  VNAQLPNKTEHVLFCSLTTEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDL 722

Query: 1442 LEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDY 1621
            LEREH+  NPDYGNP RSGKMKVV  VLK WK+QGHRVLLF+QTQQMLDILE+FL AG Y
Sbjct: 723  LEREHAYQNPDYGNPERSGKMKVVAHVLKGWKEQGHRVLLFAQTQQMLDILENFLIAGGY 782

Query: 1622 TYRRMDGLTPVKQRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDPDWNPST 1801
             YRRMDG TP+K RM LIDEFN+S++VF+FILTTKVGGLGTNL GANRVII+DPDWNPST
Sbjct: 783  VYRRMDGFTPIKHRMALIDEFNDSDDVFIFILTTKVGGLGTNLTGANRVIIYDPDWNPST 842

Query: 1802 DMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARD 1981
            DMQARERAWRIGQTRDVT+YRLITRGTIEEKVY RQIYKHFLTNK+LKNPQQ+RFFKARD
Sbjct: 843  DMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQKRFFKARD 902

Query: 1982 MKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTT----SSSAAIVSGDTE 2149
            MKDLF L DD    STETSNIFSQLS D+NVV  HK+SQ +  +    SS A    G  +
Sbjct: 903  MKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDSQDKQKSIIPVSSHAC---GAVD 959

Query: 2150 VGRGARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEE 2329
             G  +    + PS +   EKDDQ ++E+D+ETN+L+SLFDAH +HSA+NHD IMNAH +E
Sbjct: 960  EGNNS---TIGPSRSGENEKDDQ-SDEMDKETNILRSLFDAHRLHSAVNHDAIMNAHGDE 1015

Query: 2330 KMRLDEQ 2350
            KMRL+E+
Sbjct: 1016 KMRLEEE 1022


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score = 1166 bits (3017), Expect = 0.0
 Identities = 585/785 (74%), Positives = 660/785 (84%), Gaps = 3/785 (0%)
 Frame = +2

Query: 5    SRRTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTHPFRRXXX 184
            SR  +PEE DK DD+ASA++ARAV+S+S++AQARPTTK+LD++ LPKLDAP+HPF R   
Sbjct: 272  SRGNLPEEGDKIDDLASASIARAVQSISESAQARPTTKMLDSETLPKLDAPSHPFHRLKK 331

Query: 185  XXXXXXXXDTETEKKKDRSRKHKRPLPDKKWRKAASREVELSEGSDEARDNLTTSDNEEE 364
                    D+E EK KD+ RK KRPLP KKWRK  S E EL E S++  DNL TS NEE 
Sbjct: 332  PLKYPLPLDSEVEKNKDKKRKKKRPLPGKKWRKIISHEEELLEESEDTSDNLVTSSNEEV 391

Query: 365  NL-GVEGADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMG 541
            N   +E ADD+EP  VTL+GGL+IPE IFSKLFDYQKVGVQWLWELHCQ+ GGIIGDEMG
Sbjct: 392  NREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWELHCQQVGGIIGDEMG 451

Query: 542  LGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHDSAQVPSN 721
            LGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA+KWY  F VEILHDSAQ P++
Sbjct: 452  LGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWYQSFHVEILHDSAQDPAS 511

Query: 722  RKGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLITTYEQLR 901
            RK R +S ES    E SLDSD+E +LS         WD LI RVLRS+SGLLITTYEQ+R
Sbjct: 512  RKKRAKSYES----EDSLDSDDEENLSSKDTKK---WDSLINRVLRSQSGLLITTYEQIR 564

Query: 902  LLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLF 1081
            L  GKLLDI+WGYA+LDEGHRIRNPNAE+T++CKQLQTVHRIIMTGAPIQNKLAELWSLF
Sbjct: 565  LQAGKLLDIKWGYAILDEGHRIRNPNAEVTILCKQLQTVHRIIMTGAPIQNKLAELWSLF 624

Query: 1082 DFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKAD 1261
            DFVFPGKLGVLPVFEAEFAVPISVGGY+NATPLQVSTAYRCAVVLRDLIMPYLLRRMKAD
Sbjct: 625  DFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKAD 684

Query: 1262 VNAHLPKKTEHVLFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDL 1441
            VNA LP KTEHVLFCSLT EQRS+YR+FLASSEVEQIFDG+RNSLYGIDVMRKICNHPDL
Sbjct: 685  VNAQLPNKTEHVLFCSLTTEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDL 744

Query: 1442 LEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDY 1621
            LEREH+  NPDYGNP RSGKMKVV  VLK WK+QGHRVLLF+QTQQMLDILE+FL AG Y
Sbjct: 745  LEREHAYQNPDYGNPERSGKMKVVAHVLKGWKEQGHRVLLFAQTQQMLDILENFLIAGGY 804

Query: 1622 TYRRMDGLTPVKQRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDPDWNPST 1801
             YRRMDG TP+K RM LIDEFN+S++VF+FILTTKVGGLGTNL GANRVII+DPDWNPST
Sbjct: 805  VYRRMDGFTPIKHRMALIDEFNDSDDVFIFILTTKVGGLGTNLTGANRVIIYDPDWNPST 864

Query: 1802 DMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARD 1981
            DMQARERAWRIGQTRDVT+YRLITRGTIEEKVY RQIYKHFLTNK+LKNPQQ+RFFKARD
Sbjct: 865  DMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQKRFFKARD 924

Query: 1982 MKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTTSSSAAIVSGDT--EVG 2155
            MKDLF L DD    STETSNIFSQLS D+NVV  HK++Q +     S   VS      V 
Sbjct: 925  MKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDNQDK---QKSIIPVSSHACGAVD 981

Query: 2156 RGARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKM 2335
             G  S +   S+  G+ + D +++E+D+ETN+L+SLFDAH +HSA+NHD IMNAH +EKM
Sbjct: 982  EGNNSTI--GSSRSGENEKDDQSDEMDKETNILRSLFDAHRLHSAVNHDAIMNAHGDEKM 1039

Query: 2336 RLDEQ 2350
            RL+E+
Sbjct: 1040 RLEEE 1044


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857105|gb|EEE94652.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1206

 Score = 1139 bits (2947), Expect = 0.0
 Identities = 580/779 (74%), Positives = 642/779 (82%), Gaps = 4/779 (0%)
 Frame = +2

Query: 26   EEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTHPFRRXXXXXXXXXX 205
            EEDKTD + S +V RA  SM +AA+ARPTTKLLD++ LPKLDAPT PF+R          
Sbjct: 253  EEDKTDGLDSDSVVRAAHSMLEAAKARPTTKLLDSEALPKLDAPTRPFQRLKTPLKACQS 312

Query: 206  XDTETEKKKDRSRKHKRPLPDKKWRKAASREVELSEGSDEARDNLTTSDNEEENLGVEGA 385
             + + EK+K   RK KRPLP KKWRK+AS E ++ E  D  R NL TS +EE+   V+  
Sbjct: 313  PERDAEKRKGSERKRKRPLPGKKWRKSASWE-DMGESEDSGR-NLVTSISEED---VDDG 367

Query: 386  DDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVI 565
             D++   +TL+GGLKIPE IFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQV+
Sbjct: 368  YDNDSPFITLEGGLKIPEAIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 427

Query: 566  SFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHDSAQVPSNR----KGR 733
            SFLGALHFS MYKPSI+VCPVTLLRQW+REA+KWYPRF VE+LHDSAQ  S R    K R
Sbjct: 428  SFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPRFHVELLHDSAQDVSCRDPLKKKR 487

Query: 734  TQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLITTYEQLRLLGG 913
             QS ESDC+TE SLDSD E S+S         WD LI RV  S+SGLLITTYEQLRLLG 
Sbjct: 488  AQSYESDCETEDSLDSDYEGSISCRKANK---WDSLINRVFESDSGLLITTYEQLRLLGE 544

Query: 914  KLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVF 1093
            KLLD EWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKL ELWSLFDFVF
Sbjct: 545  KLLDFEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVF 604

Query: 1094 PGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAH 1273
            PGKLGV+PVFEAEFAVPISVGGY+NA+PLQVSTAYRCAVVLRDLIMPYLLRRMK DVNAH
Sbjct: 605  PGKLGVMPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKMDVNAH 664

Query: 1274 LPKKTEHVLFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLERE 1453
            LPKKTEHVLFCSLT EQRS+YR+FLAS+EVE I DG+RNSLYGIDVMRKICNHPDLLERE
Sbjct: 665  LPKKTEHVLFCSLTSEQRSVYRAFLASTEVENILDGSRNSLYGIDVMRKICNHPDLLERE 724

Query: 1454 HSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRR 1633
            HS +NPDYGNP RSGKMKVV QVLKVW++QGHRVLLF+QTQQMLDI E+FL +G Y YRR
Sbjct: 725  HSYHNPDYGNPERSGKMKVVAQVLKVWQEQGHRVLLFTQTQQMLDIFENFLNSGGYNYRR 784

Query: 1634 MDGLTPVKQRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDPDWNPSTDMQA 1813
            MDG TP+K RM++IDEFNNS ++F+FILTTKVGGLGTNL GANRVIIFDPDWNPSTDMQA
Sbjct: 785  MDGSTPIKLRMSIIDEFNNSGDIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQA 844

Query: 1814 RERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDL 1993
            RERAWRIGQ +DVT+YRLIT GTIEEKVYHRQIYKHFLTNK+LKNPQQRRFF+ARDMKDL
Sbjct: 845  RERAWRIGQKKDVTVYRLITGGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFRARDMKDL 904

Query: 1994 FTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTTSSSAAIVSGDTEVGRGARSL 2173
            FTL DD  GGSTETSNIFSQLS D+NVV T KE   +   +   A  + D          
Sbjct: 905  FTLNDDGEGGSTETSNIFSQLSEDVNVVGTKKEKLKKRKKNKGIAQHADDAI-------- 956

Query: 2174 VLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQ 2350
                     KEK D  + E+DEETN+L+SLFDA+GIHSA+NHDVIMNAHD EKMRL+EQ
Sbjct: 957  ---------KEKADCSDGEVDEETNILKSLFDANGIHSAVNHDVIMNAHDGEKMRLEEQ 1006


>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
            communis] gi|223530676|gb|EEF32549.1| DNA repair and
            recombination protein RAD26, putative [Ricinus communis]
          Length = 1230

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 573/779 (73%), Positives = 646/779 (82%), Gaps = 3/779 (0%)
 Frame = +2

Query: 23   EEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTHPFRRXXXXXXXXX 202
            EEED++ D+AS ++ARA +SM +AA+ARP TKLLD+  +PKLDAPT PF+R         
Sbjct: 255  EEEDRSHDLASDSIARAAQSMLEAAKARPVTKLLDSDAVPKLDAPTRPFQRLKTPLQFPH 314

Query: 203  XXDTETEKKKDRSRKHKRPLPDKKWRKAASREVELSEGSDEARDNLTTSDNEEENL-GVE 379
              +  ++K K   RK KRPLP +KWRK  +RE    E S+  ++N  TS  EEE L   E
Sbjct: 315  SLENASDKTKGSKRKTKRPLPGQKWRKRITREENHLEESECTKNNSVTSSTEEEKLEDEE 374

Query: 380  GADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ 559
              D  + S + L+GGLKIPE IFSKLF+YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ
Sbjct: 375  DVDGDDTSLIELEGGLKIPEAIFSKLFEYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ 434

Query: 560  VISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHDSAQVPSNRKGRTQ 739
            V+SFLGALHFS MYKPSI++CPVTLLRQW+REA KWYPRF VE+LHDSAQ   + K R +
Sbjct: 435  VLSFLGALHFSNMYKPSIVICPVTLLRQWKREAEKWYPRFHVELLHDSAQDLPHGK-RAK 493

Query: 740  SDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLITTYEQLRLLGGKL 919
            S +SD ++E SLDSD E ++S         WD LI RVL+SE+GLLITTYEQLRLLG KL
Sbjct: 494  SFDSDNESEGSLDSDYEGNISSKKANK---WDSLINRVLKSEAGLLITTYEQLRLLGEKL 550

Query: 920  LDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPG 1099
            LDIEWGYAVLDEGHRIRNPNAE+TL+CKQLQTVHRIIMTGAPIQNKL+ELWSLFDFVFPG
Sbjct: 551  LDIEWGYAVLDEGHRIRNPNAEVTLICKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPG 610

Query: 1100 KLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLP 1279
            KLGVLPVFEAEFAVPISVGGY+NA+PLQVSTAYRCAVVLRDLIMPYLLRRMK DVNA LP
Sbjct: 611  KLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKVDVNAQLP 670

Query: 1280 KKTEHVLFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHS 1459
            KKTEHVLFCSLT EQRS+YR+FLAS+EVEQI DG+RNSLYGIDVMRKICNHPDLLEREHS
Sbjct: 671  KKTEHVLFCSLTAEQRSVYRAFLASTEVEQIIDGSRNSLYGIDVMRKICNHPDLLEREHS 730

Query: 1460 SNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRRMD 1639
              NPDYGNP RSGKM+VV QVLKVW++QGHRVLLF+QTQQMLDILE FL +G Y+YRRMD
Sbjct: 731  CQNPDYGNPDRSGKMRVVAQVLKVWREQGHRVLLFAQTQQMLDILEIFLNSGGYSYRRMD 790

Query: 1640 GLTPVKQRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDPDWNPSTDMQARE 1819
            GLTP+KQRM LIDEFNNSN+VF+FILTTKVGGLGTNL GANRVIIFDPDWNPSTDMQARE
Sbjct: 791  GLTPIKQRMALIDEFNNSNDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARE 850

Query: 1820 RAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLFT 1999
            RAWRIGQ RDVT+YRLITRGTIEEKVYHRQIYKHFLTNK+LKNPQQRRFFKARDMKDLFT
Sbjct: 851  RAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFT 910

Query: 2000 LQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTTSSSAAIVSGDTEVGRGARSLVL 2179
            L DD   G TETSNIFSQLS ++NVV   KE + +      +A  + D  + +   S  +
Sbjct: 911  LNDDGGSGLTETSNIFSQLSEEVNVVGAKKEKEDKKKHYKGSASHADDAALDK-ENSPEI 969

Query: 2180 EPS--TTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHDEEKMRLDEQ 2350
             PS    KGKEK +  + E+DEETN+L+SL DA GIHSA+NHD IMNAHDEEK RL+EQ
Sbjct: 970  GPSHRKGKGKEKANHSDGEVDEETNILRSLIDAQGIHSAVNHDAIMNAHDEEKTRLEEQ 1028


>ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thaliana]
            gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA
            repair and recombination protein [Arabidopsis thaliana]
            gi|330251711|gb|AEC06805.1| DNA excision repair protein E
            [Arabidopsis thaliana]
          Length = 1187

 Score = 1118 bits (2892), Expect = 0.0
 Identities = 575/784 (73%), Positives = 641/784 (81%), Gaps = 4/784 (0%)
 Frame = +2

Query: 11   RTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTHPFRRXXXXX 190
            R +PE +D+ +D  S+ + RAV+SMS AA+ARPTTKLLDA+DLPKL+ PT PFRR     
Sbjct: 237  RNLPEGDDENED--SSIIDRAVQSMSLAAKARPTTKLLDAEDLPKLEPPTAPFRRLRKLY 294

Query: 191  XXXXXXDTETEKKK-DRSRKHKRPLPDKKWRKAASREVELSEGSDEARDNLTTSDNEEEN 367
                  D E +K+K  +  K  RPLP+KKWRK  SRE    +GS + R  LTTS  EEE 
Sbjct: 295  KTPNSPDNEAKKRKAGKKSKKTRPLPEKKWRKRISREDSSLQGSGDGRRILTTSSCEEEE 354

Query: 368  LG-VEGADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMGL 544
            L   + ADD+E S V L+GGL IPE IF KLFDYQ+VGVQWLWELHCQRAGGIIGDEMGL
Sbjct: 355  LDDFDDADDNERSSVQLEGGLNIPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGL 414

Query: 545  GKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHDSAQVPSNR 724
            GKTIQV+SFLG+LHFSKMYKPSII+CPVTLLRQWRREA+KWYP F VEILHDSAQ   + 
Sbjct: 415  GKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHG 474

Query: 725  KGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLITTYEQLRL 904
            KG+ ++ ESD D+E S+DSD E             WD L+ RVL SESGLLITTYEQLRL
Sbjct: 475  KGQGKASESDYDSESSVDSDHE-----PKSKNTKKWDSLLNRVLNSESGLLITTYEQLRL 529

Query: 905  LGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFD 1084
             G KLL+IEWGYAVLDEGHRIRNPN++ITLVCKQLQTVHRIIMTGAPIQNKL ELWSLFD
Sbjct: 530  QGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFD 589

Query: 1085 FVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADV 1264
            FVFPGKLGVLPVFEAEF+VPI+VGGY+NA+PLQVSTAYRCAVVLRDLIMPYLLRRMKADV
Sbjct: 590  FVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV 649

Query: 1265 NAHLPKKTEHVLFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLL 1444
            NAHL KKTEHVLFCSLT+EQRS YR+FLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLL
Sbjct: 650  NAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLL 709

Query: 1445 EREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYT 1624
            EREHS  NPDYGNP RSGKMKVV +VLKVWK QGHRVLLFSQTQQMLDILESFL A +Y+
Sbjct: 710  EREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYS 769

Query: 1625 YRRMDGLTPVKQRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDPDWNPSTD 1804
            YRRMDGLTPVKQRM LIDEFNNS ++FVF+LTTKVGGLGTNL GANRVIIFDPDWNPS D
Sbjct: 770  YRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSND 829

Query: 1805 MQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDM 1984
            MQARERAWRIGQ +DVT+YRLITRGTIEEKVYHRQIYKHFLTNK+LKNPQQRRFFKARDM
Sbjct: 830  MQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDM 889

Query: 1985 KDLFTLQDDA-VGGSTETSNIFSQLSGDINVVQTHKESQGRNTTSSSAAIVSGDTEVGRG 2161
            KDLF L+DD     STETSNIFSQL+ +IN+V    + +  + T     +    T  G  
Sbjct: 890  KDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQSDKKPESDTQ----LALHKTAEGSS 945

Query: 2162 ARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVIMNAHD-EEKMR 2338
             ++ V         E  D+  E +DEETN+L+SLFDAHGIHSA+NHD IMNA+D EEKMR
Sbjct: 946  EQTDV---------EMTDKTGEAMDEETNILKSLFDAHGIHSAVNHDAIMNANDEEEKMR 996

Query: 2339 LDEQ 2350
            L+ Q
Sbjct: 997  LEHQ 1000