BLASTX nr result

ID: Coptis21_contig00009525 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009525
         (1851 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329273.1| predicted protein [Populus trichocarpa] gi|2...   227   7e-57
ref|XP_002305950.1| predicted protein [Populus trichocarpa] gi|2...   217   7e-54
gb|ABK95828.1| unknown [Populus trichocarpa]                          217   1e-53
ref|XP_002283268.2| PREDICTED: uncharacterized protein LOC100253...   196   2e-47
ref|XP_002882236.1| hypothetical protein ARALYDRAFT_340395 [Arab...   142   4e-31

>ref|XP_002329273.1| predicted protein [Populus trichocarpa] gi|222870727|gb|EEF07858.1|
            predicted protein [Populus trichocarpa]
          Length = 434

 Score =  227 bits (579), Expect = 7e-57
 Identities = 142/303 (46%), Positives = 181/303 (59%), Gaps = 16/303 (5%)
 Frame = -1

Query: 1851 RVECNQRGFFIDDKKYGVLIDLCHGXXXXXXXXXXXXVLHSVSERKIWVFSAXXXXXXXX 1672
            +V CNQ+G   D K  GVL+D+ HG            VLHSVS +K+WVF A        
Sbjct: 111  QVVCNQKGIAFDSK-LGVLLDINHGVSIKIVGSVNFFVLHSVSSKKVWVF-AVKLIDDGD 168

Query: 1671 XXXXKLIKCGVIDCNVGISEISVSFGFLVLGEVNGVRVFSVRQLVKGRVKRKEKRIGSGG 1492
                KL++C VI+C+V +  ISVS G LVLGE NGVRVF++RQLVKGRVK   K I S G
Sbjct: 169  GEMVKLMRCAVIECSVPVWSISVSSGVLVLGEDNGVRVFNLRQLVKGRVKNV-KDISSNG 227

Query: 1491 SS--------YPCLGNGNCRGKEPAEMSSDGCTG----KTEMNNASAKLRARTLKQDS-- 1354
             S           +G+    G      S +GC G    KT+    S KLR+   +QDS  
Sbjct: 228  KSDGKGFKLPNGVVGDDYFHGSS----SGNGCNGVLDMKTDKQYVSVKLRSVRCRQDSGE 283

Query: 1353 --AVFVAFDNLETPTEKFSTIKAVSIHSLSQKKFIILDSVGDLHLLCLFSMLSGSEVTGR 1180
              A FVAF   E    K  T KAVSI +LS KKF+ILDS+GDLH+LCL + + GS     
Sbjct: 284  GGACFVAFKREEVEVLKPKTSKAVSIQALSHKKFVILDSMGDLHILCLSAPVIGSNFMAH 343

Query: 1179 LRSLNHLIKVQMLAVLPDVSTSTQTFWISDGLYSLHAMSLSDMEASLNENDASEMEEKRV 1000
            +R L H +KVQ LAVLPD+S   QTFW+SDGL+S+H ++LSDM A++N N+  E +EK +
Sbjct: 344  MRRLPHSMKVQKLAVLPDISLKMQTFWVSDGLHSVHTITLSDMGAAVNSNNEDETQEKLI 403

Query: 999  QIS 991
            QI+
Sbjct: 404  QIT 406


>ref|XP_002305950.1| predicted protein [Populus trichocarpa] gi|222848914|gb|EEE86461.1|
            predicted protein [Populus trichocarpa]
          Length = 442

 Score =  217 bits (553), Expect = 7e-54
 Identities = 131/297 (44%), Positives = 178/297 (59%), Gaps = 10/297 (3%)
 Frame = -1

Query: 1851 RVECNQRGFFIDDKKYGVLIDLCHGXXXXXXXXXXXXVLHSVSERKIWVFSAXXXXXXXX 1672
            +V CNQ+G   D K  GVL+D+ HG            VLHSVS +K+WVF A        
Sbjct: 112  QVVCNQKGLAFDSK-LGVLLDINHGVSIKIVGSINFFVLHSVSSKKVWVF-AVKIIDDGD 169

Query: 1671 XXXXKLIKCGVIDCNVGISEISVSFGFLVLGEVNGVRVFSVRQLVKGRVKRKEKRIGSGG 1492
                KL++C VI+C+V +  ISVS G L+LGE NGVRVF++RQLVK +VK+ +    +G 
Sbjct: 170  GEMLKLMRCAVIECSVPVWSISVSSGVLILGEDNGVRVFNLRQLVKWKVKKVKGFDSNGK 229

Query: 1491 SSYPCLGNGNCRGKEPAEMSSDG------CTGKTEMNNASAKLRARTLKQDS----AVFV 1342
                 L + N  G++    SS G        GKT+ +  S K R+    QDS    A FV
Sbjct: 230  LDRKGLKSSNGDGEDNGVSSSSGNACNGALDGKTDKHCVSVKQRSVRCSQDSGEGGACFV 289

Query: 1341 AFDNLETPTEKFSTIKAVSIHSLSQKKFIILDSVGDLHLLCLFSMLSGSEVTGRLRSLNH 1162
            AF    T   K +T+KAVSI +L  KKF+ILDS GDLH+LCL + + G  V   +R L H
Sbjct: 290  AFKREVTEGMKPTTLKAVSIQALPPKKFVILDSTGDLHILCLSAPVVGPNVMAHMRQLPH 349

Query: 1161 LIKVQMLAVLPDVSTSTQTFWISDGLYSLHAMSLSDMEASLNENDASEMEEKRVQIS 991
             +KVQ LAV PD S+  QTFW+SDGL+S+H ++LS+M+A++N ND    +EK ++I+
Sbjct: 350  SMKVQKLAVFPDFSSKMQTFWVSDGLHSVHTITLSNMDAAVNTNDGDVTQEKLIRIT 406


>gb|ABK95828.1| unknown [Populus trichocarpa]
          Length = 442

 Score =  217 bits (552), Expect = 1e-53
 Identities = 130/297 (43%), Positives = 179/297 (60%), Gaps = 10/297 (3%)
 Frame = -1

Query: 1851 RVECNQRGFFIDDKKYGVLIDLCHGXXXXXXXXXXXXVLHSVSERKIWVFSAXXXXXXXX 1672
            +V CNQ+G   D K  GVL+D+ HG            VLHSVS +K+WVF A        
Sbjct: 112  QVVCNQKGLAFDSK-LGVLLDINHGVSIKIVGSINFFVLHSVSSKKVWVF-AVKIIDDGD 169

Query: 1671 XXXXKLIKCGVIDCNVGISEISVSFGFLVLGEVNGVRVFSVRQLVKGRVKRKEKRIGSGG 1492
                KL++C VI+C+V +  ISVS G L+LGE NGVRVF++RQLVK +VK+ +    +G 
Sbjct: 170  GEMLKLMRCAVIECSVPVWSISVSSGVLILGEDNGVRVFNLRQLVKWKVKKVKGFDSNGK 229

Query: 1491 SSYPCLGNGNCRGKEPAEMSSDG------CTGKTEMNNASAKLRARTLKQDS----AVFV 1342
                 L + N  G++    SS G        GKT+ +  S K R+    QDS    A FV
Sbjct: 230  LDRKGLKSSNGDGEDNGVSSSSGNACNGALDGKTDKHCVSVKQRSVRCSQDSGEGGACFV 289

Query: 1341 AFDNLETPTEKFSTIKAVSIHSLSQKKFIILDSVGDLHLLCLFSMLSGSEVTGRLRSLNH 1162
            AF    T   K +T+KAVSI +L  KKF+ILDS+GDLH+LCL + + G  V   +R L H
Sbjct: 290  AFKREATEGMKPTTLKAVSIQALPPKKFVILDSIGDLHILCLSAPVVGPNVMAHMRQLPH 349

Query: 1161 LIKVQMLAVLPDVSTSTQTFWISDGLYSLHAMSLSDMEASLNENDASEMEEKRVQIS 991
             +KVQ LAV PD S+  QTFW+SDGL+S+H ++LS+M+A++N N+    +EK ++I+
Sbjct: 350  SMKVQKLAVFPDFSSKMQTFWVSDGLHSVHTITLSNMDAAVNTNNGDVTQEKLIRIT 406


>ref|XP_002283268.2| PREDICTED: uncharacterized protein LOC100253163 [Vitis vinifera]
          Length = 466

 Score =  196 bits (497), Expect = 2e-47
 Identities = 125/297 (42%), Positives = 169/297 (56%), Gaps = 11/297 (3%)
 Frame = -1

Query: 1848 VECNQRGFFIDDKKYGVLIDLCHGXXXXXXXXXXXXVLHSVSERKIWVFSAXXXXXXXXX 1669
            V C QR    D K  GVL +  HG             ++SVS  KIWVFS          
Sbjct: 136  VLCTQRDLQFDPK-LGVLFNANHGVSVKLGGSINIFAMYSVSNSKIWVFSVKMAGDDRDD 194

Query: 1668 XXXK-LIKCGVIDCNVGISEISVSFGFLVLGEVNGVRVFSVRQLVKGRVKRKEKRIGSGG 1492
                 L KC VIDC V +  ISVS  FL+LGE NGVRVF +R LVKG ++++++   +  
Sbjct: 195  GVVLKLRKCAVIDCGVPVFSISVSGEFLILGEENGVRVFQLRPLVKGWIRKEQRESKNLN 254

Query: 1491 SSYPCLGNGNCRGKEPAEMSSDG-CTGKTEMNNASAKLRARTLKQDS----AVFVAFD-- 1333
                C G+ +   +   E++ +G   G+T+++  S K R+   +QDS    A FVAF   
Sbjct: 255  FPNGC-GSKSAGVEANMEIACNGDLEGRTDLHRVSVKRRSVRFRQDSSEGSACFVAFKGK 313

Query: 1332 ---NLETPTEKFSTIKAVSIHSLSQKKFIILDSVGDLHLLCLFSMLSGSEVTGRLRSLNH 1162
               +L++       +KAVSI +LS KKF+ILDS GD+HLLCL     GSE+T  +R   +
Sbjct: 314  EVGHLKSMMPPLIPVKAVSIQALSAKKFLILDSDGDVHLLCLSIYHLGSEITCHMRQFTN 373

Query: 1161 LIKVQMLAVLPDVSTSTQTFWISDGLYSLHAMSLSDMEASLNENDASEMEEKRVQIS 991
             +KVQ LAVLPD ST  +T WISDG YS+H M++SD + S NE+D ++ EEK  QIS
Sbjct: 374  TMKVQKLAVLPDTSTRGRTVWISDGFYSVHMMTVSDTDTSANEDDENDSEEKLKQIS 430


>ref|XP_002882236.1| hypothetical protein ARALYDRAFT_340395 [Arabidopsis lyrata subsp.
            lyrata] gi|297328076|gb|EFH58495.1| hypothetical protein
            ARALYDRAFT_340395 [Arabidopsis lyrata subsp. lyrata]
          Length = 487

 Score =  142 bits (357), Expect = 4e-31
 Identities = 96/294 (32%), Positives = 160/294 (54%), Gaps = 9/294 (3%)
 Frame = -1

Query: 1851 RVECNQRGFFIDDKKYGVLIDLCHGXXXXXXXXXXXXVLHSVSERKIWVFSAXXXXXXXX 1672
            +V C+Q+G   D +K GVL++L HG             ++SVS  KI +F          
Sbjct: 129  KVICDQKGIEFD-QKVGVLLNLSHGVSVKIVGSTNYFSMYSVSSSKILIFGLKVVTDGSN 187

Query: 1671 XXXXK-----LIKCGVIDCNVGISEISVSFGFLVLGEVNGVRVFSVRQLVKGRVKRKEKR 1507
                      L++CG I+C   +  I +  G L+LGE +GVRV ++R++VKGR+K+  K 
Sbjct: 188  CGDDDAVVVKLVRCGEIECVRPVWSIGIFSGLLILGEDDGVRVLNLREIVKGRLKKGRKD 247

Query: 1506 IGSGGSSYPCLGNGNC---RGKEPAEMSSDGCTGKTEMNNASAKLRARTLKQDSAVFVAF 1336
             G        L NG+    + KE A   + G   K    ++  ++   + ++++A   A 
Sbjct: 248  NGR-------LRNGHIVEVKKKENAVHVNKGLLSKRRQGSSETRMCFVSFQKNAAAVGA- 299

Query: 1335 DNLETPTEKFSTIKAVSIHSLSQKKFIILDSVGDLHLLCLFSMLS-GSEVTGRLRSLNHL 1159
             +L++ T    +++A+SI +LS K+F+ILDS G +H+L +    S GS  T  ++ L   
Sbjct: 300  -DLKSETCVVMSLRAISIQALSIKRFLILDSAGYIHVLHVSGRHSLGSNFTCDMQQLPRF 358

Query: 1158 IKVQMLAVLPDVSTSTQTFWISDGLYSLHAMSLSDMEASLNENDASEMEEKRVQ 997
            + VQ LA+LP++S  T++FWISDG YS+H +++SD E +  E D    E+K+++
Sbjct: 359  MDVQKLALLPEISVGTKSFWISDGDYSVHRVTISDEETTSKEKD----EDKKIR 408


Top