BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009238
         (657 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36057.3| unnamed protein product [Vitis vinifera]              234   1e-59
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19...   220   2e-55
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ...   200   2e-49
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik...   185   6e-45
ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788...   175   8e-42

>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  234 bits (596), Expect = 1e-59
 Identities = 117/210 (55%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
 Frame = +3

Query: 30  IFPDPFGPLAGFAEDIFDVLGRYFPVHFTHPN-DDFDVKRDDLSKVLMFAFASTPLFEPF 206
           +FPDP GPLA FA D+FD+LG YFP+HFTHP  +D DVKRDDLS+ LM AF+ST LFEPF
Sbjct: 203 LFPDPSGPLASFAGDLFDILGCYFPIHFTHPQGEDVDVKRDDLSRALMLAFSSTTLFEPF 262

Query: 207 VIPMLLDKLSSSLPLAKVDSLKYLGNCSLKYGADVMAKHAKSIWSSLKEAIFASEQESLL 386
            IP+LL+KLSSSLPLAKVDSLKYL NC LKYG D M KH ++IW S+K+AIF SEQE +L
Sbjct: 263 AIPLLLEKLSSSLPLAKVDSLKYLSNCLLKYGDDRMTKHVEAIWFSVKDAIFCSEQEPML 322

Query: 387 SRISESPDAMTLPDNEIAKEALLCLQKFILQEDGLFLGXXXXXXXXXXXXXSAASFKNFK 566
           S  SE  D +   +NEI  EA++ LQK IL+  GL L              +  SF+++ 
Sbjct: 323 SLASELLDHVGFQENEIVTEAIILLQKVILENSGLSLSLIVGDKDINTIVNTVTSFRSYN 382

Query: 567 TISVENRQKLYALGHMLSASAKVSVACSNK 656
            I ++++ KL A+G +L  SAK S+ C N+
Sbjct: 383 DIPLQSKHKLCAIGRILYVSAKASITCCNR 412


>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
           communis] gi|223544868|gb|EEF46383.1| DNA
           repair/transcription protein met18/mms19, putative
           [Ricinus communis]
          Length = 1174

 Score =  220 bits (561), Expect = 2e-55
 Identities = 112/210 (53%), Positives = 149/210 (70%), Gaps = 1/210 (0%)
 Frame = +3

Query: 30  IFPDPFGPLAGFAEDIFDVLGRYFPVHFTHPN-DDFDVKRDDLSKVLMFAFASTPLFEPF 206
           +FPDP GP + FA DIF +LG YFP+HFTHP  +D DVKRDDLS+ LM AF+STPLFEPF
Sbjct: 202 LFPDPSGPFSSFAGDIFSILGCYFPIHFTHPKAEDVDVKRDDLSRALMLAFSSTPLFEPF 261

Query: 207 VIPMLLDKLSSSLPLAKVDSLKYLGNCSLKYGADVMAKHAKSIWSSLKEAIFASEQESLL 386
            +P+LL+KLSSSLP AKVDSLKYL  C+LK+ AD +A+HA +IWSSLK+AI++S +E +L
Sbjct: 262 AMPLLLEKLSSSLPTAKVDSLKYLSYCTLKFRADRIAEHAGAIWSSLKDAIYSSGEEPML 321

Query: 387 SRISESPDAMTLPDNEIAKEALLCLQKFILQEDGLFLGXXXXXXXXXXXXXSAASFKNFK 566
           S   ES D+     NEIA EALL L+  I+Q +  FL              +  S+K++ 
Sbjct: 322 SSDLESVDSPGSEKNEIATEALLLLENLIVQNNNFFLSMIISDEEVKMIFNTITSYKSYN 381

Query: 567 TISVENRQKLYALGHMLSASAKVSVACSNK 656
            IS++++QKL+ +G +L   AKVSV+  N+
Sbjct: 382 EISLQSKQKLHMVGRILYVCAKVSVSSCNR 411


>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
           [Cucumis sativus]
          Length = 1147

 Score =  200 bits (508), Expect = 2e-49
 Identities = 104/206 (50%), Positives = 141/206 (68%), Gaps = 1/206 (0%)
 Frame = +3

Query: 30  IFPDPFGPLAGFAEDIFDVLGRYFPVHFTH-PNDDFDVKRDDLSKVLMFAFASTPLFEPF 206
           +FPDP G LA  + D+F+ LG YFP+HFTH   +D DV+R+DLS  LM AF+STPLFEPF
Sbjct: 203 LFPDPTGALASSSSDLFEFLGCYFPIHFTHGKEEDIDVRRNDLSHALMRAFSSTPLFEPF 262

Query: 207 VIPMLLDKLSSSLPLAKVDSLKYLGNCSLKYGADVMAKHAKSIWSSLKEAIFASEQESLL 386
            IP+LL+KLSSSLPLAK+DSLKYL +C++KYGAD M KH+++IWSS+KE IF S  +  L
Sbjct: 263 AIPLLLEKLSSSLPLAKIDSLKYLSDCTVKYGADRMKKHSEAIWSSVKEIIFTSIGQPNL 322

Query: 387 SRISESPDAMTLPDNEIAKEALLCLQKFILQEDGLFLGXXXXXXXXXXXXXSAASFKNFK 566
           S  +ES ++ +  +NE+  EAL  LQK ++  +GLFL                  +  +K
Sbjct: 323 SINTESLNSPSFQENEMTTEALRLLQKMVVASNGLFLTLIINDEDVKDIFNILNIYTCYK 382

Query: 567 TISVENRQKLYALGHMLSASAKVSVA 644
              +++RQ+L A+GH+L  SA  SVA
Sbjct: 383 DFPLQSRQRLNAVGHILYTSASASVA 408


>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
           truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
           excision repair protein-like protein [Medicago
           truncatula]
          Length = 1140

 Score =  185 bits (470), Expect = 6e-45
 Identities = 99/209 (47%), Positives = 133/209 (63%), Gaps = 1/209 (0%)
 Frame = +3

Query: 30  IFPDPFGPLAGFAEDIFDVLGRYFPVHFTHPND-DFDVKRDDLSKVLMFAFASTPLFEPF 206
           ++PDP G LA FA D+FD+L  YFP+HFTH    D  V+RDDLS+ LM AFASTP+FEPF
Sbjct: 203 LYPDPSGLLASFARDVFDLLEPYFPIHFTHQTSGDTHVQRDDLSRTLMSAFASTPVFEPF 262

Query: 207 VIPMLLDKLSSSLPLAKVDSLKYLGNCSLKYGADVMAKHAKSIWSSLKEAIFASEQESLL 386
           VIP+LL KLSSSL  AK+DSL+YL  CS KYGA+ +AK+  +IWSSLK+ ++    E   
Sbjct: 263 VIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAKYTGAIWSSLKDTLYTYLGEPDF 322

Query: 387 SRISESPDAMTLPDNEIAKEALLCLQKFILQEDGLFLGXXXXXXXXXXXXXSAASFKNFK 566
           S      D +  P +E+  EAL  LQ+ I+Q     +              S AS++ + 
Sbjct: 323 SFTLAPTDGINFPKSEVVVEALSLLQQLIVQNSSQLVSLIIDDEDVNFITNSIASYEMYD 382

Query: 567 TISVENRQKLYALGHMLSASAKVSVACSN 653
           TISV+ ++KL+A+G +L  SAK S+   N
Sbjct: 383 TISVQEKKKLHAIGRILYISAKTSIPSCN 411


>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
          Length = 1135

 Score =  175 bits (443), Expect = 8e-42
 Identities = 94/207 (45%), Positives = 130/207 (62%), Gaps = 1/207 (0%)
 Frame = +3

Query: 36  PDPFGPLAGFAEDIFDVLGRYFPVHFTHPND-DFDVKRDDLSKVLMFAFASTPLFEPFVI 212
           PD    LA +A+D+FD+L  YFP+HFTHP+  D  V+RDDLS  LM AF+STPLFEPFVI
Sbjct: 205 PDSSSLLASYAKDVFDILEPYFPIHFTHPSSGDTHVQRDDLSTSLMSAFSSTPLFEPFVI 264

Query: 213 PMLLDKLSSSLPLAKVDSLKYLGNCSLKYGADVMAKHAKSIWSSLKEAIFASEQESLLSR 392
           P+LL+KLSSSL  AK+DSLKYL  CS KYGA+ +AK+A +IWSSLK+ +     E   S 
Sbjct: 265 PLLLEKLSSSLHSAKIDSLKYLRVCSSKYGAERIAKYAGAIWSSLKDTLSTYLGEPDFSF 324

Query: 393 ISESPDAMTLPDNEIAKEALLCLQKFILQEDGLFLGXXXXXXXXXXXXXSAASFKNFKTI 572
                D +  P+NE   EAL  LQ+ I Q   L +              +  S++ +  I
Sbjct: 325 TIAPVDGIGFPENEFVIEALSLLQQLIAQNSSLLVSLIIDDEDVNTIFSTITSYETYDAI 384

Query: 573 SVENRQKLYALGHMLSASAKVSVACSN 653
            V+ ++KL+A+G +L  ++K +++  N
Sbjct: 385 PVQEKKKLHAIGRILYITSKTTISSCN 411