BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009237
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36057.3| unnamed protein product [Vitis vinifera]              301   8e-80
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19...   280   2e-73
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ...   277   1e-72
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik...   266   4e-69
ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788...   257   2e-66

>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  301 bits (771), Expect = 8e-80
 Identities = 142/218 (65%), Positives = 183/218 (83%)
 Frame = +3

Query: 33  MAKPNSWPSHIESFIDLSRPPNEQIASRDAIASLLKNDLLTFQALVKEMSLYLTTTDHII 212
           MA+ +    +IES++D SR   +Q AS DAIA LLKND+LT + LV EM +YLTTTD+II
Sbjct: 1   MAQLSQLTQYIESYVDSSRSSTQQAASVDAIAYLLKNDILTLETLVTEMGMYLTTTDNII 60

Query: 213 RGRGILLLGEVLTSLATKPLDNTTVHTLVSFFTDKLADWQALHGGLIGCLALLRRKSNVG 392
           R RGILLL E+LT LA+KPLDN T+H+L+SFFTD+LADW+AL G LIGCLAL++RKSN+G
Sbjct: 61  RTRGILLLAELLTRLASKPLDNVTIHSLISFFTDRLADWRALRGALIGCLALMKRKSNMG 120

Query: 393 KVTGSDARSLVRSYMDNIQVQSLGKHDRKLCFEILDCLLNHHQDVAATLGDDFISGICEA 572
           +VT +DAR++ ++Y++N+QVQSLG+HDRKLCFEIL+CLL+H+ +  A+LGDD + GIC A
Sbjct: 121 RVTDNDARAVAQAYLENVQVQSLGQHDRKLCFEILECLLDHYPESVASLGDDLVYGICGA 180

Query: 573 IDGEKDPQCLMLTFHLVAGIARIFPDPFGPLAGFAEDI 686
           IDGEKDP+CLMLTFH+V  +AR+FPDP GPLA FA D+
Sbjct: 181 IDGEKDPRCLMLTFHIVEILARLFPDPSGPLASFAGDL 218


>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
           communis] gi|223544868|gb|EEF46383.1| DNA
           repair/transcription protein met18/mms19, putative
           [Ricinus communis]
          Length = 1174

 Score =  280 bits (715), Expect = 2e-73
 Identities = 134/218 (61%), Positives = 173/218 (79%)
 Frame = +3

Query: 33  MAKPNSWPSHIESFIDLSRPPNEQIASRDAIASLLKNDLLTFQALVKEMSLYLTTTDHII 212
           MA+P     +IES++D SR  ++Q AS DAI  LLKND +T  +LVKEM +YLTTTD II
Sbjct: 1   MAEPTQLTQYIESYVDASRSLSQQAASLDAIVLLLKNDAVTIGSLVKEMEMYLTTTDDII 60

Query: 213 RGRGILLLGEVLTSLATKPLDNTTVHTLVSFFTDKLADWQALHGGLIGCLALLRRKSNVG 392
           R RGILLLGE L+ L++KPLDNTT+H+L++FFT++LADW+AL G L+GCLAL+RR+SN G
Sbjct: 61  RARGILLLGEALSHLSSKPLDNTTIHSLIAFFTERLADWRALRGALVGCLALIRRRSN-G 119

Query: 393 KVTGSDARSLVRSYMDNIQVQSLGKHDRKLCFEILDCLLNHHQDVAATLGDDFISGICEA 572
            +TG DA+ +  SY+ N+QVQSL ++DRKLCFE+L+CLL +     A+LG+D I GICEA
Sbjct: 120 IITGIDAKVVAESYLQNLQVQSLAQYDRKLCFELLECLLENCPAAVASLGEDLIYGICEA 179

Query: 573 IDGEKDPQCLMLTFHLVAGIARIFPDPFGPLAGFAEDI 686
           IDGEKDPQCLMLTFH+V  + ++FPDP GP + FA DI
Sbjct: 180 IDGEKDPQCLMLTFHIVEVLGKLFPDPSGPFSSFAGDI 217


>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
           [Cucumis sativus]
          Length = 1147

 Score =  277 bits (709), Expect = 1e-72
 Identities = 125/209 (59%), Positives = 171/209 (81%)
 Frame = +3

Query: 60  HIESFIDLSRPPNEQIASRDAIASLLKNDLLTFQALVKEMSLYLTTTDHIIRGRGILLLG 239
           ++ESF+D+SR P++Q  S + I SL+KN++LT + LV+EM +YLT TD+IIRGRGILLLG
Sbjct: 10  YVESFVDVSRTPSQQATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLG 69

Query: 240 EVLTSLATKPLDNTTVHTLVSFFTDKLADWQALHGGLIGCLALLRRKSNVGKVTGSDARS 419
           E+L  LA+KPLD+ T+H+L++FFT++LADW+AL G L+GCLAL+RRK+NVG ++ +DA+S
Sbjct: 70  ELLACLASKPLDSATIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGSISQNDAKS 129

Query: 420 LVRSYMDNIQVQSLGKHDRKLCFEILDCLLNHHQDVAATLGDDFISGICEAIDGEKDPQC 599
           + +SY  N+QVQSLG+HDRKL FE+L CLL H+ D   +LGDD + GICEAIDGEKDP C
Sbjct: 130 VAQSYFQNLQVQSLGQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHC 189

Query: 600 LMLTFHLVAGIARIFPDPFGPLAGFAEDI 686
           L+LTF +V  +A++FPDP G LA  + D+
Sbjct: 190 LLLTFRIVELVAKLFPDPTGALASSSSDL 218


>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
           truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
           excision repair protein-like protein [Medicago
           truncatula]
          Length = 1140

 Score =  266 bits (679), Expect = 4e-69
 Identities = 126/218 (57%), Positives = 168/218 (77%)
 Frame = +3

Query: 33  MAKPNSWPSHIESFIDLSRPPNEQIASRDAIASLLKNDLLTFQALVKEMSLYLTTTDHII 212
           MA+      HIES++D S  P+ Q+AS DAI  L+K + LT +ALV+E+ +YLT+TD +I
Sbjct: 1   MAETTQLTRHIESYVDSSSTPSHQVASLDAIVLLIKTNALTLEALVRELDMYLTSTDTLI 60

Query: 213 RGRGILLLGEVLTSLATKPLDNTTVHTLVSFFTDKLADWQALHGGLIGCLALLRRKSNVG 392
           R RGILLL EVLT + +  LD+ T+H+LV FF +++ADW+A+ G L+GCLAL+RRKS VG
Sbjct: 61  RSRGILLLAEVLTRINSISLDSKTIHSLVGFFKERMADWKAVRGALVGCLALIRRKSVVG 120

Query: 393 KVTGSDARSLVRSYMDNIQVQSLGKHDRKLCFEILDCLLNHHQDVAATLGDDFISGICEA 572
            VTGSDA+S+ +S++ ++QVQSLG +DRKLCFE+LD LL HH D  A+L +D I GICEA
Sbjct: 121 MVTGSDAKSITQSFLQHLQVQSLGLYDRKLCFELLDYLLEHHVDSIASLEEDLIFGICEA 180

Query: 573 IDGEKDPQCLMLTFHLVAGIARIFPDPFGPLAGFAEDI 686
           ID EKDP+CLML FH+V  +AR++PDP G LA FA D+
Sbjct: 181 IDAEKDPECLMLAFHIVESLARLYPDPSGLLASFARDV 218


>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
          Length = 1135

 Score =  257 bits (656), Expect = 2e-66
 Identities = 120/218 (55%), Positives = 165/218 (75%)
 Frame = +3

Query: 33  MAKPNSWPSHIESFIDLSRPPNEQIASRDAIASLLKNDLLTFQALVKEMSLYLTTTDHII 212
           MA+      HIES++D S  P +Q +S +A+ASL+  D L  +ALV+E+ +YLTTTD+++
Sbjct: 1   MAETTQLTRHIESYVDSSSTPAQQASSLNAVASLVNTDALPLEALVRELEMYLTTTDNVV 60

Query: 213 RGRGILLLGEVLTSLATKPLDNTTVHTLVSFFTDKLADWQALHGGLIGCLALLRRKSNVG 392
           R RGILLL EV+T + +KPL++ T+H+LV FF D+LADW+A+ G L+GCLAL+RRKS VG
Sbjct: 61  RARGILLLAEVMTRIESKPLNSATIHSLVGFFKDRLADWRAVQGALVGCLALIRRKSVVG 120

Query: 393 KVTGSDARSLVRSYMDNIQVQSLGKHDRKLCFEILDCLLNHHQDVAATLGDDFISGICEA 572
            VT SDA ++ +S++  +QVQSLG++DRKLCFE+LDCLL  + D   TLG+D I GICEA
Sbjct: 121 MVTDSDATTIAQSFLQYMQVQSLGQYDRKLCFELLDCLLERYFDAVTTLGEDLIYGICEA 180

Query: 573 IDGEKDPQCLMLTFHLVAGIARIFPDPFGPLAGFAEDI 686
           ID EKDP CL L FH+VA +A++ PD    LA +A+D+
Sbjct: 181 IDAEKDPDCLKLAFHIVASLAQLNPDSSSLLASYAKDV 218