BLASTX nr result
ID: Coptis21_contig00008440
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00008440 (975 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-... 179 1e-42 ref|XP_002526497.1| ring finger protein, putative [Ricinus commu... 176 8e-42 ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arab... 163 7e-38 gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsi... 160 6e-37 ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis t... 160 6e-37 >ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Vitis vinifera] Length = 342 Score = 179 bits (453), Expect = 1e-42 Identities = 114/304 (37%), Positives = 143/304 (47%), Gaps = 13/304 (4%) Frame = -2 Query: 971 LHFILRYLXXXXXXXXXXNDVAPPTIQEPAVTSRISNRRVAPETNHETLINSLPIFSYNR 792 L+ +LRYL +DV P + R S+RRV+PE +LI+SLP+F++ Sbjct: 57 LYLLLRYLSRRCSERLHSDDVVLPPVDSDR---RFSSRRVSPEDL--SLIDSLPLFTFGS 111 Query: 791 LRSNTTRSSADCAVCLSKFEPHDQLRLLPLCCHAFHLTCIDTWLQSNHTCPLCRSTIHLQ 612 +R + S DCAVCLSKFEPHDQLRLLP+CCHAFH CIDTWL SN TCPLCRS I Sbjct: 112 VRGRNSSSEGDCAVCLSKFEPHDQLRLLPICCHAFHARCIDTWLASNQTCPLCRSPIFAT 171 Query: 611 ESDQYKKLFQETN-NTSFRVQMGNV---XXXXXXXXXXXXXSIGSFEYLLDDDDS----- 459 E+D K + TN SFR+++G+V S+GSF+Y++D + Sbjct: 172 EADFMKAILASTNAGDSFRIELGSVSRRRSASESGEARRSYSVGSFDYIVDHESEVTVAS 231 Query: 458 ----AAXXXXXXXXXXXXXXXXXVTVAIPXXXXXXXXXXXXXXGWLKDYVDRLAXXXXXX 291 +A WLKDYVDRL+ Sbjct: 232 THRRGGSESSAAEKDKDDAGAQSNQLAPEPPGPSTAAEVASGRSWLKDYVDRLS------ 285 Query: 290 XXXXXXXXXXXXXXXXXXXSAGDGFTGSSRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRW 111 S+G FTGSSRR V G WDLE N GEEI RW Sbjct: 286 ----STASLSISSRALSFRSSGRFFTGSSRRNETASV---GEWDLEANRVGEEISEMFRW 338 Query: 110 LSGV 99 SG+ Sbjct: 339 FSGI 342 >ref|XP_002526497.1| ring finger protein, putative [Ricinus communis] gi|223534172|gb|EEF35888.1| ring finger protein, putative [Ricinus communis] Length = 354 Score = 176 bits (446), Expect = 8e-42 Identities = 106/270 (39%), Positives = 137/270 (50%), Gaps = 1/270 (0%) Frame = -2 Query: 908 APPTIQEPAVTSRISNRRVAPETNHETLINSLPIFSYNRLRSNTTRSSADCAVCLSKFEP 729 APPTI ++ RV+PE+ ++I+SLP+F+++ ++ +T SS DCAVCLSKFEP Sbjct: 77 APPTIT--------ASNRVSPESPAFSIIDSLPLFTFSSIKRRSTSSSGDCAVCLSKFEP 128 Query: 728 HDQLRLLPLCCHAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQE-TNNTSFRVQ 552 DQLRLLPLCCHAFH+ CIDTWL SN TCPLCRS IH +SD K L + SFR++ Sbjct: 129 QDQLRLLPLCCHAFHIHCIDTWLHSNQTCPLCRSPIHASDSDLLKSLSPDAAPPESFRLE 188 Query: 551 MGNVXXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXXXXXVTVAIPXXXX 372 +G++ S+GSFEY++D+D Sbjct: 189 IGSISRRQTASEPRSSYSVGSFEYVVDEDSEVTMSQTHRRSVSDKEGGTHSR----QDSN 244 Query: 371 XXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXXXXXXXXXXXSAGDGFTGSSRRRS 192 WLKDYVDRL+ S+G FTGSSRR Sbjct: 245 LASQVSGGGRSWLKDYVDRLS-------------------SSLSFRSSGRLFTGSSRRSE 285 Query: 191 NGDVNNGGSWDLEGNAYGEEIGNFLRWLSG 102 G + G +D+E N GEEI RW SG Sbjct: 286 IGSL---GDYDVEANRVGEEITEMFRWFSG 312 >ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arabidopsis lyrata subsp. lyrata] gi|297324162|gb|EFH54583.1| hypothetical protein ARALYDRAFT_486491 [Arabidopsis lyrata subsp. lyrata] Length = 334 Score = 163 bits (412), Expect = 7e-38 Identities = 114/294 (38%), Positives = 141/294 (47%), Gaps = 23/294 (7%) Frame = -2 Query: 911 VAPPTIQEPA---VTS---RISNRRVAPETNHETLINSLPIFSYNRL-RSNTTRSSADCA 753 V PP+ + VTS R S RV+PET ++++SLPIF ++ + R +++ +S DCA Sbjct: 60 VIPPSSSSTSAATVTSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSTNSGDCA 119 Query: 752 VCLSKFEPHDQLRLLPLCCHAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQETN 573 VCLSKFEP +QLRLLPLCCHAFH CID WL SN TCPLCRS + ESD K L N Sbjct: 120 VCLSKFEPEEQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLVGGNN 179 Query: 572 NT-----SFRVQMGNV-XXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXX 411 N+ SFR+++G++ SIGSF+Y++DD DS Sbjct: 180 NSNGGENSFRLEIGSISRRQTESVEQHRSYSIGSFDYIVDDVDSEISESNFNRGSISAKQ 239 Query: 410 XXXVTV----------AIPXXXXXXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXX 261 T A WLKDYVDRL+ Sbjct: 240 EDATTTTTATAVTSNPASFEASLAADIGNDGSRSWLKDYVDRLS--------------RG 285 Query: 260 XXXXXXXXXSAGDGFTGSSRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRWLSGV 99 S+G FTGSSRR V DLE N GEEI RWLSGV Sbjct: 286 ISSRAMSFRSSGRFFTGSSRRTEELTV-----MDLEANHAGEEISELFRWLSGV 334 >gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsis thaliana] Length = 273 Score = 160 bits (404), Expect = 6e-37 Identities = 107/276 (38%), Positives = 131/276 (47%), Gaps = 18/276 (6%) Frame = -2 Query: 872 RISNRRVAPETNHETLINSLPIFSYNRL-RSNTTRSSADCAVCLSKFEPHDQLRLLPLCC 696 R S RV+PET ++++SLPIF ++ + R +++ +S DCAVCLSKFEP DQLRLLPLCC Sbjct: 17 RFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCC 76 Query: 695 HAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQETNN-----TSFRVQMGNV--- 540 HAFH CID WL SN TCPLCRS + ESD K L +N SFR+++G++ Sbjct: 77 HAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRR 136 Query: 539 --XXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXXXXXVTVAIP------ 384 SIGSF+Y++DD DS T Sbjct: 137 RQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTS 196 Query: 383 -XXXXXXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXXXXXXXXXXXSAGDGFTGS 207 WLKDYVDRL+ S+G FTGS Sbjct: 197 FEASLAADIGNDGSRSWLKDYVDRLS--------------RGISSRAMSFRSSGRFFTGS 242 Query: 206 SRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRWLSGV 99 SRR V DLE N GEEI RWLSGV Sbjct: 243 SRRSEELTV-----MDLEANHAGEEISELFRWLSGV 273 >ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis thaliana] gi|68565314|sp|Q9LY41.1|ATL4_ARATH RecName: Full=E3 ubiquitin-protein ligase ATL4; AltName: Full=Protein ARABIDOPSIS TOXICOS EN LEVADURA 4; Short=Protein ATL4; AltName: Full=RING-H2 finger protein ATL4; AltName: Full=RING-H2 finger protein RHX1a gi|7576198|emb|CAB87859.1| RING-H2 zinc finger protein ATL4 [Arabidopsis thaliana] gi|66865934|gb|AAY57601.1| RING finger family protein [Arabidopsis thaliana] gi|114050661|gb|ABI49480.1| At3g60220 [Arabidopsis thaliana] gi|332646504|gb|AEE80025.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis thaliana] Length = 334 Score = 160 bits (404), Expect = 6e-37 Identities = 107/276 (38%), Positives = 131/276 (47%), Gaps = 18/276 (6%) Frame = -2 Query: 872 RISNRRVAPETNHETLINSLPIFSYNRL-RSNTTRSSADCAVCLSKFEPHDQLRLLPLCC 696 R S RV+PET ++++SLPIF ++ + R +++ +S DCAVCLSKFEP DQLRLLPLCC Sbjct: 78 RFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCC 137 Query: 695 HAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQETNN-----TSFRVQMGNV--- 540 HAFH CID WL SN TCPLCRS + ESD K L +N SFR+++G++ Sbjct: 138 HAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRR 197 Query: 539 --XXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXXXXXVTVAIP------ 384 SIGSF+Y++DD DS T Sbjct: 198 RQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTS 257 Query: 383 -XXXXXXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXXXXXXXXXXXSAGDGFTGS 207 WLKDYVDRL+ S+G FTGS Sbjct: 258 FEASLAADIGNDGSRSWLKDYVDRLS--------------RGISSRAMSFRSSGRFFTGS 303 Query: 206 SRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRWLSGV 99 SRR V DLE N GEEI RWLSGV Sbjct: 304 SRRSEELTV-----MDLEANHAGEEISELFRWLSGV 334