BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008440
         (975 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-...   179   1e-42
ref|XP_002526497.1| ring finger protein, putative [Ricinus commu...   176   8e-42
ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arab...   163   7e-38
gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsi...   160   6e-37
ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis t...   160   6e-37

>ref|XP_002269069.2| PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Vitis vinifera]
          Length = 342

 Score =  179 bits (453), Expect = 1e-42
 Identities = 114/304 (37%), Positives = 143/304 (47%), Gaps = 13/304 (4%)
 Frame = -2

Query: 971 LHFILRYLXXXXXXXXXXNDVAPPTIQEPAVTSRISNRRVAPETNHETLINSLPIFSYNR 792
           L+ +LRYL          +DV  P +       R S+RRV+PE    +LI+SLP+F++  
Sbjct: 57  LYLLLRYLSRRCSERLHSDDVVLPPVDSDR---RFSSRRVSPEDL--SLIDSLPLFTFGS 111

Query: 791 LRSNTTRSSADCAVCLSKFEPHDQLRLLPLCCHAFHLTCIDTWLQSNHTCPLCRSTIHLQ 612
           +R   + S  DCAVCLSKFEPHDQLRLLP+CCHAFH  CIDTWL SN TCPLCRS I   
Sbjct: 112 VRGRNSSSEGDCAVCLSKFEPHDQLRLLPICCHAFHARCIDTWLASNQTCPLCRSPIFAT 171

Query: 611 ESDQYKKLFQETN-NTSFRVQMGNV---XXXXXXXXXXXXXSIGSFEYLLDDDDS----- 459
           E+D  K +   TN   SFR+++G+V                S+GSF+Y++D +       
Sbjct: 172 EADFMKAILASTNAGDSFRIELGSVSRRRSASESGEARRSYSVGSFDYIVDHESEVTVAS 231

Query: 458 ----AAXXXXXXXXXXXXXXXXXVTVAIPXXXXXXXXXXXXXXGWLKDYVDRLAXXXXXX 291
                                    +A                 WLKDYVDRL+      
Sbjct: 232 THRRGGSESSAAEKDKDDAGAQSNQLAPEPPGPSTAAEVASGRSWLKDYVDRLS------ 285

Query: 290 XXXXXXXXXXXXXXXXXXXSAGDGFTGSSRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRW 111
                              S+G  FTGSSRR     V   G WDLE N  GEEI    RW
Sbjct: 286 ----STASLSISSRALSFRSSGRFFTGSSRRNETASV---GEWDLEANRVGEEISEMFRW 338

Query: 110 LSGV 99
            SG+
Sbjct: 339 FSGI 342


>ref|XP_002526497.1| ring finger protein, putative [Ricinus communis]
           gi|223534172|gb|EEF35888.1| ring finger protein,
           putative [Ricinus communis]
          Length = 354

 Score =  176 bits (446), Expect = 8e-42
 Identities = 106/270 (39%), Positives = 137/270 (50%), Gaps = 1/270 (0%)
 Frame = -2

Query: 908 APPTIQEPAVTSRISNRRVAPETNHETLINSLPIFSYNRLRSNTTRSSADCAVCLSKFEP 729
           APPTI         ++ RV+PE+   ++I+SLP+F+++ ++  +T SS DCAVCLSKFEP
Sbjct: 77  APPTIT--------ASNRVSPESPAFSIIDSLPLFTFSSIKRRSTSSSGDCAVCLSKFEP 128

Query: 728 HDQLRLLPLCCHAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQE-TNNTSFRVQ 552
            DQLRLLPLCCHAFH+ CIDTWL SN TCPLCRS IH  +SD  K L  +     SFR++
Sbjct: 129 QDQLRLLPLCCHAFHIHCIDTWLHSNQTCPLCRSPIHASDSDLLKSLSPDAAPPESFRLE 188

Query: 551 MGNVXXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXXXXXVTVAIPXXXX 372
           +G++             S+GSFEY++D+D                               
Sbjct: 189 IGSISRRQTASEPRSSYSVGSFEYVVDEDSEVTMSQTHRRSVSDKEGGTHSR----QDSN 244

Query: 371 XXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXXXXXXXXXXXSAGDGFTGSSRRRS 192
                      WLKDYVDRL+                         S+G  FTGSSRR  
Sbjct: 245 LASQVSGGGRSWLKDYVDRLS-------------------SSLSFRSSGRLFTGSSRRSE 285

Query: 191 NGDVNNGGSWDLEGNAYGEEIGNFLRWLSG 102
            G +   G +D+E N  GEEI    RW SG
Sbjct: 286 IGSL---GDYDVEANRVGEEITEMFRWFSG 312


>ref|XP_002878324.1| hypothetical protein ARALYDRAFT_486491 [Arabidopsis lyrata subsp.
           lyrata] gi|297324162|gb|EFH54583.1| hypothetical protein
           ARALYDRAFT_486491 [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  163 bits (412), Expect = 7e-38
 Identities = 114/294 (38%), Positives = 141/294 (47%), Gaps = 23/294 (7%)
 Frame = -2

Query: 911 VAPPTIQEPA---VTS---RISNRRVAPETNHETLINSLPIFSYNRL-RSNTTRSSADCA 753
           V PP+    +   VTS   R S  RV+PET   ++++SLPIF ++ + R +++ +S DCA
Sbjct: 60  VIPPSSSSTSAATVTSDSRRFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSTNSGDCA 119

Query: 752 VCLSKFEPHDQLRLLPLCCHAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQETN 573
           VCLSKFEP +QLRLLPLCCHAFH  CID WL SN TCPLCRS +   ESD  K L    N
Sbjct: 120 VCLSKFEPEEQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLVGGNN 179

Query: 572 NT-----SFRVQMGNV-XXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXX 411
           N+     SFR+++G++              SIGSF+Y++DD DS                
Sbjct: 180 NSNGGENSFRLEIGSISRRQTESVEQHRSYSIGSFDYIVDDVDSEISESNFNRGSISAKQ 239

Query: 410 XXXVTV----------AIPXXXXXXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXX 261
               T           A                 WLKDYVDRL+                
Sbjct: 240 EDATTTTTATAVTSNPASFEASLAADIGNDGSRSWLKDYVDRLS--------------RG 285

Query: 260 XXXXXXXXXSAGDGFTGSSRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRWLSGV 99
                    S+G  FTGSSRR     V      DLE N  GEEI    RWLSGV
Sbjct: 286 ISSRAMSFRSSGRFFTGSSRRTEELTV-----MDLEANHAGEEISELFRWLSGV 334


>gb|AAC69858.1| RING-H2 finger protein RHX1a, partial [Arabidopsis thaliana]
          Length = 273

 Score =  160 bits (404), Expect = 6e-37
 Identities = 107/276 (38%), Positives = 131/276 (47%), Gaps = 18/276 (6%)
 Frame = -2

Query: 872 RISNRRVAPETNHETLINSLPIFSYNRL-RSNTTRSSADCAVCLSKFEPHDQLRLLPLCC 696
           R S  RV+PET   ++++SLPIF ++ + R +++ +S DCAVCLSKFEP DQLRLLPLCC
Sbjct: 17  RFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCC 76

Query: 695 HAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQETNN-----TSFRVQMGNV--- 540
           HAFH  CID WL SN TCPLCRS +   ESD  K L    +N      SFR+++G++   
Sbjct: 77  HAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRR 136

Query: 539 --XXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXXXXXVTVAIP------ 384
                          SIGSF+Y++DD DS                    T          
Sbjct: 137 RQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTS 196

Query: 383 -XXXXXXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXXXXXXXXXXXSAGDGFTGS 207
                           WLKDYVDRL+                         S+G  FTGS
Sbjct: 197 FEASLAADIGNDGSRSWLKDYVDRLS--------------RGISSRAMSFRSSGRFFTGS 242

Query: 206 SRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRWLSGV 99
           SRR     V      DLE N  GEEI    RWLSGV
Sbjct: 243 SRRSEELTV-----MDLEANHAGEEISELFRWLSGV 273


>ref|NP_191581.1| E3 ubiquitin-protein ligase ATL4 [Arabidopsis thaliana]
           gi|68565314|sp|Q9LY41.1|ATL4_ARATH RecName: Full=E3
           ubiquitin-protein ligase ATL4; AltName: Full=Protein
           ARABIDOPSIS TOXICOS EN LEVADURA 4; Short=Protein ATL4;
           AltName: Full=RING-H2 finger protein ATL4; AltName:
           Full=RING-H2 finger protein RHX1a
           gi|7576198|emb|CAB87859.1| RING-H2 zinc finger protein
           ATL4 [Arabidopsis thaliana] gi|66865934|gb|AAY57601.1|
           RING finger family protein [Arabidopsis thaliana]
           gi|114050661|gb|ABI49480.1| At3g60220 [Arabidopsis
           thaliana] gi|332646504|gb|AEE80025.1| E3
           ubiquitin-protein ligase ATL4 [Arabidopsis thaliana]
          Length = 334

 Score =  160 bits (404), Expect = 6e-37
 Identities = 107/276 (38%), Positives = 131/276 (47%), Gaps = 18/276 (6%)
 Frame = -2

Query: 872 RISNRRVAPETNHETLINSLPIFSYNRL-RSNTTRSSADCAVCLSKFEPHDQLRLLPLCC 696
           R S  RV+PET   ++++SLPIF ++ + R +++ +S DCAVCLSKFEP DQLRLLPLCC
Sbjct: 78  RFSGHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCC 137

Query: 695 HAFHLTCIDTWLQSNHTCPLCRSTIHLQESDQYKKLFQETNN-----TSFRVQMGNV--- 540
           HAFH  CID WL SN TCPLCRS +   ESD  K L    +N      SFR+++G++   
Sbjct: 138 HAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRR 197

Query: 539 --XXXXXXXXXXXXXSIGSFEYLLDDDDSAAXXXXXXXXXXXXXXXXXVTVAIP------ 384
                          SIGSF+Y++DD DS                    T          
Sbjct: 198 RQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDATTTTATATAVTTNPTS 257

Query: 383 -XXXXXXXXXXXXXXGWLKDYVDRLAXXXXXXXXXXXXXXXXXXXXXXXXXSAGDGFTGS 207
                           WLKDYVDRL+                         S+G  FTGS
Sbjct: 258 FEASLAADIGNDGSRSWLKDYVDRLS--------------RGISSRAMSFRSSGRFFTGS 303

Query: 206 SRRRSNGDVNNGGSWDLEGNAYGEEIGNFLRWLSGV 99
           SRR     V      DLE N  GEEI    RWLSGV
Sbjct: 304 SRRSEELTV-----MDLEANHAGEEISELFRWLSGV 334