BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008342
         (771 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   282   6e-74
ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containi...   264   2e-68
ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   262   7e-68
dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]                255   8e-66
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,...   255   8e-66

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic [Vitis vinifera]
           gi|297741486|emb|CBI32618.3| unnamed protein product
           [Vitis vinifera]
          Length = 842

 Score =  282 bits (721), Expect = 6e-74
 Identities = 146/253 (57%), Positives = 178/253 (70%)
 Frame = -1

Query: 762 VLEWFSRVDKLGIAPKGLVNKSVRNLFALECRRLVKSRKVKDAVALMESLSGFLFPVKGF 583
           V+E   +VDKLGI P  L + S   L + ECRR++   +V++ V L+E L GF FPVK  
Sbjct: 121 VVEVLRKVDKLGICPLELFDGSTLELLSKECRRILNCGQVEEVVELIEILDGFHFPVKKL 180

Query: 582 LKPSEIFDLCLSERDPDAAVRYASLLPHAHTWFSSIILGFGKKGDLMSALIAYETSKSKT 403
           L+P +   +C+++R+P+ AVRYA +LPHA   F +II  FGKK DL SAL A+E SK K 
Sbjct: 181 LEPLDFIKICVNKRNPNLAVRYACILPHAQILFCTIIHEFGKKRDLGSALTAFEASKQKL 240

Query: 402 DSPNMYMCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLNI 223
             PNMY  RTMIDVCGLC ++ KSRYIYE LLAQK+ PN Y FNSLMNVN HDLSYT N+
Sbjct: 241 IGPNMYCYRTMIDVCGLCSHYQKSRYIYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNV 300

Query: 222 YKHMKVCHLLFYLAPL*NLGVAPDLASYNILLKVCCHAGRVDLAQDIYEEVRSIALTGAL 43
           YK+M+            NLGV  D+ASYNILLK CC AGRVDLAQ+IY EV+++   G L
Sbjct: 301 YKNMQ------------NLGVTADMASYNILLKACCVAGRVDLAQEIYREVQNLESNGML 348

Query: 42  KLDVITYSTIIKV 4
           KLDV TYSTIIKV
Sbjct: 349 KLDVFTYSTIIKV 361


>ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  264 bits (674), Expect = 2e-68
 Identities = 137/254 (53%), Positives = 176/254 (69%)
 Frame = -1

Query: 765 SVLEWFSRVDKLGIAPKGLVNKSVRNLFALECRRLVKSRKVKDAVALMESLSGFLFPVKG 586
           SV++   +V++LGI+   L ++        +CRR+ KS ++++ V LME LSGF F V+ 
Sbjct: 136 SVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGELEELVELMEVLSGFGFSVRE 195

Query: 585 FLKPSEIFDLCLSERDPDAAVRYASLLPHAHTWFSSIILGFGKKGDLMSALIAYETSKSK 406
            +KPSE+  LC+  R+P  A+RYAS+LPHA   F + I  FGKK DL SA IAY  SK+ 
Sbjct: 196 MMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINEFGKKRDLKSAYIAYTESKAN 255

Query: 405 TDSPNMYMCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLN 226
            +  NMY+ RT+IDVCGLCG++ KSR IY+ L+ Q VIPN + FNSLMNVNAHDL+YT  
Sbjct: 256 MNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPNIFVFNSLMNVNAHDLNYTFQ 315

Query: 225 IYKHMKVCHLLFYLAPL*NLGVAPDLASYNILLKVCCHAGRVDLAQDIYEEVRSIALTGA 46
           +YK+M+            NLGV  D+ASYNILLK CC AGRVDLAQDIY EV+ +  TG 
Sbjct: 316 LYKNMQ------------NLGVPADMASYNILLKACCLAGRVDLAQDIYREVKHLETTGV 363

Query: 45  LKLDVITYSTIIKV 4
           LKLDV TYSTI+KV
Sbjct: 364 LKLDVFTYSTIVKV 377


>ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g02830, chloroplastic-like [Cucumis sativus]
          Length = 855

 Score =  262 bits (669), Expect = 7e-68
 Identities = 136/254 (53%), Positives = 175/254 (68%)
 Frame = -1

Query: 765 SVLEWFSRVDKLGIAPKGLVNKSVRNLFALECRRLVKSRKVKDAVALMESLSGFLFPVKG 586
           SV++   +V++LGI+   L ++        +CRR+ KS ++++ V LME LSGF F V+ 
Sbjct: 136 SVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGELEELVELMEVLSGFGFSVRE 195

Query: 585 FLKPSEIFDLCLSERDPDAAVRYASLLPHAHTWFSSIILGFGKKGDLMSALIAYETSKSK 406
            +KPSE+  LC+  R+P  A+RYAS+LPHA   F + I  FGKK DL SA IAY  SK+ 
Sbjct: 196 MMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINEFGKKRDLKSAYIAYTESKAN 255

Query: 405 TDSPNMYMCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLN 226
            +  NMY+ RT+IDVCGLCG++ KSR IY+ L+ Q V PN + FNSLMNVNAHDL+YT  
Sbjct: 256 MNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPNIFVFNSLMNVNAHDLNYTFQ 315

Query: 225 IYKHMKVCHLLFYLAPL*NLGVAPDLASYNILLKVCCHAGRVDLAQDIYEEVRSIALTGA 46
           +YK+M+            NLGV  D+ASYNILLK CC AGRVDLAQDIY EV+ +  TG 
Sbjct: 316 LYKNMQ------------NLGVPADMASYNILLKACCLAGRVDLAQDIYREVKHLETTGV 363

Query: 45  LKLDVITYSTIIKV 4
           LKLDV TYSTI+KV
Sbjct: 364 LKLDVFTYSTIVKV 377


>dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
          Length = 852

 Score =  255 bits (651), Expect = 8e-66
 Identities = 129/256 (50%), Positives = 168/256 (65%)
 Frame = -1

Query: 771 LDSVLEWFSRVDKLGIAPKGLVNKSVRNLFALECRRLVKSRKVKDAVALMESLSGFLFPV 592
           ++SV+    R++K+GIAP  LV+ S   L   + R +  S +V+ A+ LME L+G  F +
Sbjct: 140 IESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKI 199

Query: 591 KGFLKPSEIFDLCLSERDPDAAVRYASLLPHAHTWFSSIILGFGKKGDLMSALIAYETSK 412
           K  + P ++   C+   +P  A+RYA LLPH       II GFGKKGD++S + AYE  K
Sbjct: 200 KELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEACK 259

Query: 411 SKTDSPNMYMCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYT 232
              D+PNMY+CRTMIDVCGLCG++ KSRYIYE LL + + PN Y  NSLMNVN+HDL YT
Sbjct: 260 QILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYT 319

Query: 231 LNIYKHMKVCHLLFYLAPL*NLGVAPDLASYNILLKVCCHAGRVDLAQDIYEEVRSIALT 52
           L +YK+M++            L V  D+ SYNILLK CC AGRVDLAQDIY+E + +  +
Sbjct: 320 LKVYKNMQI------------LDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESS 367

Query: 51  GALKLDVITYSTIIKV 4
           G LKLD  TY TIIKV
Sbjct: 368 GLLKLDAFTYCTIIKV 383


>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 786

 Score =  255 bits (651), Expect = 8e-66
 Identities = 127/256 (49%), Positives = 172/256 (67%)
 Frame = -1

Query: 771 LDSVLEWFSRVDKLGIAPKGLVNKSVRNLFALECRRLVKSRKVKDAVALMESLSGFLFPV 592
           +DSV++  +  D+LG+ P  L + +  +L   EC R+V   +++D + LME+L+G+ F +
Sbjct: 62  VDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVNFGRLEDIILLMETLAGYSFSI 121

Query: 591 KGFLKPSEIFDLCLSERDPDAAVRYASLLPHAHTWFSSIILGFGKKGDLMSALIAYETSK 412
           K  ++PS +  LC+ +R+P  AVRYA L PH      SI+  FGKKGDL SAL AYE   
Sbjct: 122 KELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSIVKQFGKKGDLDSALAAYEAYM 181

Query: 411 SKTDSPNMYMCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYT 232
             +  P+MY+ R +IDVCGLCG++ +SRYI+E +++QKVIPN + FNSLMNVNAHDL YT
Sbjct: 182 QHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKVIPNIFVFNSLMNVNAHDLGYT 241

Query: 231 LNIYKHMKVCHLLFYLAPL*NLGVAPDLASYNILLKVCCHAGRVDLAQDIYEEVRSIALT 52
           L++YK M+            NLGV  D+ SYNILLK C  AG+VDLAQDIY E + + L 
Sbjct: 242 LHVYKKMQ------------NLGVTADMTSYNILLKSCSLAGKVDLAQDIYREAKQLELA 289

Query: 51  GALKLDVITYSTIIKV 4
           G LKLD  TY TIIK+
Sbjct: 290 GLLKLDDFTYCTIIKI 305