BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008132
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525805.1| pentatricopeptide repeat-containing protein,...    78   9e-13
ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat...    75   4e-12
ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat...    75   6e-12
ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat...    75   6e-12
ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat...    74   9e-12

>ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534892|gb|EEF36579.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 182

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 38/76 (50%), Positives = 54/76 (71%)
 Frame = -2

Query: 228 IIIDGMCKDGKISEAKELFRTLSARDLQLINTRTYNVMISGCFREGNLKEAQDLFFEMQE 49
           II+DGMCK GK+++AKELF TL    LQ  + RTYN++I     EG+L+EA  +F EM+E
Sbjct: 65  IIVDGMCKAGKLNDAKELFSTLPIEGLQP-DVRTYNILIKVFCNEGSLEEAYQVFREMEE 123

Query: 48  KGFVPDDFMFNIMVQG 1
            G +PD   +N+++QG
Sbjct: 124 GGSLPDGCSYNVIIQG 139


>ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 35/77 (45%), Positives = 53/77 (68%)
 Frame = -2

Query: 231 TIIIDGMCKDGKISEAKELFRTLSARDLQLINTRTYNVMISGCFREGNLKEAQDLFFEMQ 52
           +I++DGMC  GK++ A ELF +L  + LQ IN  TY +MI G  ++G+L +A+DL   M+
Sbjct: 466 SILLDGMCSAGKLNAAWELFSSLPGKGLQ-INVYTYTIMIKGLCKQGSLDKAEDLLINME 524

Query: 51  EKGFVPDDFMFNIMVQG 1
           E G +PD+  +N+ VQG
Sbjct: 525 ENGCLPDNCTYNVFVQG 541


>ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/77 (45%), Positives = 56/77 (72%)
 Frame = -2

Query: 231 TIIIDGMCKDGKISEAKELFRTLSARDLQLINTRTYNVMISGCFREGNLKEAQDLFFEMQ 52
           +II++GMC  GK+++A ELF  LS++ ++ I+  TYN+MI+G  +EG L +A+DL  +M+
Sbjct: 415 SIILNGMCSSGKLNDALELFSYLSSKGVK-IDVVTYNIMINGLCKEGLLDDAEDLLMKME 473

Query: 51  EKGFVPDDFMFNIMVQG 1
           E G  PD+  +N+ VQG
Sbjct: 474 ENGCPPDECTYNVFVQG 490



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 28/72 (38%), Positives = 41/72 (56%)
 Frame = -2

Query: 225 IIDGMCKDGKISEAKELFRTLSARDLQLINTRTYNVMISGCFREGNLKEAQDLFFEMQEK 46
           ++DG+CKDG + EA +LF  ++ + +Q  N  TYN +I G       KEA  L   M  K
Sbjct: 172 VVDGLCKDGMVFEALDLFSQMTGKGIQ-PNLFTYNCLIHGLCNFDRWKEAAPLLANMMRK 230

Query: 45  GFVPDDFMFNIM 10
           G +PD   FN++
Sbjct: 231 GIMPDVQTFNVI 242


>ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/77 (45%), Positives = 56/77 (72%)
 Frame = -2

Query: 231 TIIIDGMCKDGKISEAKELFRTLSARDLQLINTRTYNVMISGCFREGNLKEAQDLFFEMQ 52
           +II++GMC  GK+++A ELF  LS++ ++ I+  TYN+MI+G  +EG L +A+DL  +M+
Sbjct: 467 SIILNGMCSSGKLNDALELFSYLSSKGVK-IDVVTYNIMINGLCKEGLLDDAEDLLMKME 525

Query: 51  EKGFVPDDFMFNIMVQG 1
           E G  PD+  +N+ VQG
Sbjct: 526 ENGCPPDECTYNVFVQG 542


>ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 35/76 (46%), Positives = 54/76 (71%)
 Frame = -2

Query: 228 IIIDGMCKDGKISEAKELFRTLSARDLQLINTRTYNVMISGCFREGNLKEAQDLFFEMQE 49
           II+DGMC  GK+++A ELF  LS++ ++ I+  TYN+MI G  +EG L +A+DL  +M+E
Sbjct: 473 IILDGMCSSGKLNDALELFSYLSSKGVK-IDVVTYNIMIKGLCKEGLLDDAEDLLMKMEE 531

Query: 48  KGFVPDDFMFNIMVQG 1
            G  P++  +N+ VQG
Sbjct: 532 NGCPPNECTYNVFVQG 547