BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00008090
         (2462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containi...   663   0.0  
ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containi...   613   e-173
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi...   609   e-172
gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucu...   608   e-171
ref|XP_003602247.1| Pentatricopeptide repeat-containing protein ...   605   e-170

>ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Vitis vinifera]
          Length = 672

 Score =  663 bits (1710), Expect = 0.0
 Identities = 357/644 (55%), Positives = 445/644 (69%), Gaps = 8/644 (1%)
 Frame = +1

Query: 112  PLLSIRCLSYATPEEXXXXXXXXXXTLLIEPPLNSLRPQRRXXXXXXXXXXXXXXXXXXX 291
            PLLS+R LS+ TPEE           L IEPPL+SLR Q+                    
Sbjct: 27   PLLSLRHLSFVTPEEAAAERRRRKRRLRIEPPLSSLRHQQAQPRQNPNPNHNPNAPKLP- 85

Query: 292  EHVSALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSR 471
            E VSAL G RL+LHN+IL LIR NDLDEAAL TRHSIYSNC+PTIFT N+V+AALLRQSR
Sbjct: 86   EPVSALSGNRLNLHNRILGLIRVNDLDEAALLTRHSIYSNCRPTIFTVNSVLAALLRQSR 145

Query: 472  YSDMLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYR 651
            YSD+LSLHRF+TQAGVAANVVTHNLLINAY DCRKTDTALEHYKQLIN+APF+PSPTTYR
Sbjct: 146  YSDLLSLHRFITQAGVAANVVTHNLLINAYLDCRKTDTALEHYKQLINDAPFNPSPTTYR 205

Query: 652  ILVKGLVDNLKVDRAVELKDEMLEKGLAADPVVYNYLMLGLVKNEDGDRALALYEELKGK 831
            IL+KG+VDN KV+RA+ELK+EML KG AADPVVY+YLMLG V+N + D    LYEELK K
Sbjct: 206  ILIKGIVDNGKVERALELKEEMLGKGFAADPVVYSYLMLGHVRNLNADGVFELYEELKEK 265

Query: 832  LDFVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKS 1011
            L  V+DG+V G+LMK YFL+G++KEAM+ YA+  GEGS I+M+A+A+NSVL AL KNGK 
Sbjct: 266  LGDVDDGVVVGSLMKGYFLRGMEKEAMQCYAEAVGEGSKIRMSAVAFNSVLDALSKNGKF 325

Query: 1012 DEALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIDVFRKMGEKRCSPDTL 1191
            DEA+ LFERM  E++PPR+L++NLGS+NVMVD FC  G+F DAI+VFRKMGEKRCS DTL
Sbjct: 326  DEAMLLFERMMAEYNPPRRLSMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTL 385

Query: 1192 SFNNLIQQLCVNDLMPKAEELYREMGEIPGANPDEYTYVLLIDTCFEQSRADDAAEYFGK 1371
            S+NNLI+QLC N ++ +AEELY EM    G NPDE+TYVLL+DTCF+++R DD A YF K
Sbjct: 386  SYNNLIEQLCNNGMLAEAEELYGEMAN-KGVNPDEFTYVLLMDTCFKENRTDDGAGYFRK 444

Query: 1372 MVESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKL 1551
            MVE+GL+PNLA Y+K+VDGL+K GKIDEA  F+  M+ KL++D A+++ +++AL E  K 
Sbjct: 445  MVETGLRPNLAVYSKLVDGLVKVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKH 504

Query: 1552 DEVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDLVXXXXXXXXXXXXXXXXXXXX 1731
            D+VLK++ +ML D+     +++ EFV++ LRKEGRE D+V                    
Sbjct: 505  DDVLKMIGDMLDDDASEFTTDLQEFVKEELRKEGREEDVV-------------------- 544

Query: 1732 XXXXXXXXXXXXXXXXXXXXGGTYSLFGDTKPSNGNVPPLSLFGDTKTSNS-DV---PSA 1899
                                  T +     K +  ++ P  LFG   T N  DV    + 
Sbjct: 545  --KLMEDKEREKAEAQAKEAAATEAAKASAKAAVSSLLPSKLFGSKDTENEPDVVIGNTV 602

Query: 1900 ETFSMNGEAPSGNQEGSGGAPA----VEATPALGVVEETIDASD 2019
            E  S+N E     QE  G +PA     EAT A    +  + + D
Sbjct: 603  EAISVNEEVEDVEQESIGDSPAESGSEEATKAHNSADLDVKSDD 646


>ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Cucumis sativus] gi|449511036|ref|XP_004163845.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At3g49240-like [Cucumis sativus]
          Length = 624

 Score =  613 bits (1582), Expect = e-173
 Identities = 307/550 (55%), Positives = 400/550 (72%), Gaps = 1/550 (0%)
 Frame = +1

Query: 22   MYLSKLTFFSXXXXXXXXXXXXXXXXRHVTPLLSIRCLSYATPEEXXXXXXXXXXTLLIE 201
            M LSK  FF+                    P++++R LS+A+ EE           L IE
Sbjct: 1    MALSKPAFFTHLKTLTGSHHLLQRQALAPFPIVTLRFLSFASAEEADAERRRRKRRLRIE 60

Query: 202  PPLNSLRPQRRXXXXXXXXXXXXXXXXXXXEHVSALKGKRLDLHNKILTLIRENDLDEAA 381
            PPL+S    R                    EH+SAL G RL+LHN+ILTLIRENDL+EAA
Sbjct: 61   PPLSSSSAARPLTQPPRSQTPQNPNAPKIPEHISALSGNRLNLHNRILTLIRENDLEEAA 120

Query: 382  LYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDMLSLHRFVTQAGVAANVVTHNLLINAY 561
            L+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D+LSLHRF+TQAGV  N++THNL+   Y
Sbjct: 121  LFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYADLLSLHRFITQAGVVPNIITHNLIFQTY 180

Query: 562  CDCRKTDTALEHYKQLINNAPFDPSPTTYRILVKGLVDNLKVDRAVELKDEMLEKGLAAD 741
             DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+KGLVDN K++RA+ELKDEM+EKG A D
Sbjct: 181  LDCRKPDTAMEHYKQLINDAPFNPSPTTYRILIKGLVDNNKLERAMELKDEMIEKGFAPD 240

Query: 742  PVVYNYLMLGLVKNEDGDRALALYEELKGKLD-FVNDGIVYGNLMKAYFLKGLDKEAMEI 918
            P++Y+YLM G V++ D D    L+EELK KL   V DG+VYGNLMK YF+K +++EAM+ 
Sbjct: 241  PLIYHYLMGGCVRSLDPDGVFKLFEELKEKLGATVEDGVVYGNLMKGYFMKEMEEEAMKC 300

Query: 919  YADLSGEGSSIKMNALAYNSVLQALIKNGKSDEALQLFERMKEEHSPPRKLTVNLGSYNV 1098
            Y +  G+ S +KM+A+AYNSVL AL +NGK  EAL LF+RM +EH PPR L VNLGS+NV
Sbjct: 301  YEETVGDNSVVKMSAIAYNSVLDALCRNGKFGEALTLFDRMTKEHRPPRHLAVNLGSFNV 360

Query: 1099 MVDWFCEQGKFDDAIDVFRKMGEKRCSPDTLSFNNLIQQLCVNDLMPKAEELYREMGEIP 1278
            MVD +C +G+F +AI+VF KMG+ RC PDTLSFNNLI+QLC N ++ +AE LY  M +  
Sbjct: 361  MVDGYCIEGRFKEAIEVFEKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDD-K 419

Query: 1279 GANPDEYTYVLLIDTCFEQSRADDAAEYFGKMVESGLKPNLATYNKVVDGLIKAGKIDEA 1458
            G NPDE+TY LL+D+CF+++RADDAA YF KMV+SGL+PN+A YN +VD L+K GKID+A
Sbjct: 420  GVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMVDSGLRPNIAVYNILVDELVKLGKIDDA 479

Query: 1459 NGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEVLKLVSEMLKDEKVGLNSEMDEFVRDA 1638
              FF  M+ KL++DA++++ +++AL E+ K+DE+L +V  +L D+ +  + E+ EFVR  
Sbjct: 480  KSFFDLMVKKLKMDASSYQFIMKALSESGKMDEILNVVDTLLDDDGIEFSEELQEFVRGE 539

Query: 1639 LRKEGREGDL 1668
            LRKE RE DL
Sbjct: 540  LRKENREEDL 549


>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Glycine max]
          Length = 631

 Score =  609 bits (1571), Expect = e-172
 Identities = 303/524 (57%), Positives = 393/524 (75%), Gaps = 1/524 (0%)
 Frame = +1

Query: 100  RHVTPLLSIRCLSYATPEEXXXXXXXXXXTLLIEPPLNSLRPQRRXXXXXXXXXXXXXXX 279
            R  +  +SIR LS+++PEE           L +EPPL++L   +                
Sbjct: 20   RRPSSCVSIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNN 79

Query: 280  XXXXEHVSALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALL 459
                EHVSAL G RL+LHN+ILTLIRENDLDEAALYTRHSIYSNC+PTIFT NAV+AALL
Sbjct: 80   PKLPEHVSALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALL 139

Query: 460  RQSRYSDMLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSP 639
            RQSRYSD+LSLHRF+TQAGV  N++THNL+   Y DCRK DTALEHYKQ +N+AP +PSP
Sbjct: 140  RQSRYSDLLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSP 199

Query: 640  TTYRILVKGLVDNLKVDRAVELKDEMLEKGLAADPVVYNYLMLGLVKNEDGDRALALYEE 819
            TTYR+L+KGL+DN K++RA+++K EM  KG A DP+VY+YLMLG  +  DGD  L LYEE
Sbjct: 200  TTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEE 259

Query: 820  LKGKL-DFVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALI 996
            L+ +L   V DGIV+G LMK YF+KG++KEAME Y +  G+    KM+A+ YNSVL AL 
Sbjct: 260  LRERLGGVVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKK---KMSAVGYNSVLDALS 316

Query: 997  KNGKSDEALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIDVFRKMGEKRC 1176
            KNG+ DEAL+LF+RM +EH P ++L+VNLGS+NV+VD +C++G+F++A++VFRKMGE RC
Sbjct: 317  KNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRC 376

Query: 1177 SPDTLSFNNLIQQLCVNDLMPKAEELYREMGEIPGANPDEYTYVLLIDTCFEQSRADDAA 1356
            SPDTLSFNNLI +LC N  + +AEE+Y EM E  G +PDE+TY LL+D CF ++RADDAA
Sbjct: 377  SPDTLSFNNLIDRLCDNGRIVEAEEVYGEM-EGKGVSPDEFTYGLLMDACFRENRADDAA 435

Query: 1357 EYFGKMVESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALC 1536
             YF KMV+SGL+PNLA YN++V GL+K GKIDEA GFF  M+ KL++D  +++ +++ L 
Sbjct: 436  AYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLS 495

Query: 1537 EAAKLDEVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 1668
            +  +LDE+LK+V  +L D  V  + E  EFV+  LRKEGRE +L
Sbjct: 496  DEGRLDEMLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEEL 539


>gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
            melo]
          Length = 624

 Score =  608 bits (1569), Expect = e-171
 Identities = 305/550 (55%), Positives = 396/550 (72%), Gaps = 1/550 (0%)
 Frame = +1

Query: 22   MYLSKLTFFSXXXXXXXXXXXXXXXXRHVTPLLSIRCLSYATPEEXXXXXXXXXXTLLIE 201
            M LSK  FF+                    P+++ R LS+A+ EE           L IE
Sbjct: 1    MALSKPAFFTHLKTLTGSHHLLQRQAPAPLPIVTFRFLSFASAEEADAERRRRKRRLRIE 60

Query: 202  PPLNSLRPQRRXXXXXXXXXXXXXXXXXXXEHVSALKGKRLDLHNKILTLIRENDLDEAA 381
            PPL+S    R                    EH+SAL G RL+LHN+ILTLIRENDL+EAA
Sbjct: 61   PPLSSSSAARPQSQPSRSQTPQNPNTPKVPEHISALSGNRLNLHNRILTLIRENDLEEAA 120

Query: 382  LYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDMLSLHRFVTQAGVAANVVTHNLLINAY 561
            L+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D+LSLHRF+TQAGV  N++THNL+   Y
Sbjct: 121  LFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYADLLSLHRFITQAGVVPNIITHNLIFQTY 180

Query: 562  CDCRKTDTALEHYKQLINNAPFDPSPTTYRILVKGLVDNLKVDRAVELKDEMLEKGLAAD 741
             DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+KGLVDN K++RA+ELK+EM+ KG A D
Sbjct: 181  LDCRKPDTAMEHYKQLINDAPFNPSPTTYRILIKGLVDNKKLERAMELKEEMIVKGFAPD 240

Query: 742  PVVYNYLMLGLVKNEDGDRALALYEELKGKL-DFVNDGIVYGNLMKAYFLKGLDKEAMEI 918
            P++Y+YLM G V++ D D    L+EELK KL   V DG+VYGNLMK YF+K +++EAM+ 
Sbjct: 241  PLIYHYLMAGCVRSSDPDGVFKLFEELKEKLGGTVEDGVVYGNLMKGYFMKEMEEEAMKC 300

Query: 919  YADLSGEGSSIKMNALAYNSVLQALIKNGKSDEALQLFERMKEEHSPPRKLTVNLGSYNV 1098
            Y +  G+   +KM+A+AYNSVL AL K+GK  EAL LF+RM +EH PPR L VNLG++NV
Sbjct: 301  YEETVGDNPVVKMSAIAYNSVLDALCKHGKFSEALTLFDRMTKEHRPPRHLAVNLGTFNV 360

Query: 1099 MVDWFCEQGKFDDAIDVFRKMGEKRCSPDTLSFNNLIQQLCVNDLMPKAEELYREMGEIP 1278
            MVD +C +G+F +AI VF +MG+ RCSPDTLSFNNLI+QLC N ++ +AE LY  MGE  
Sbjct: 361  MVDGYCIKGRFKEAIGVFEEMGDYRCSPDTLSFNNLIEQLCNNGMLAEAEMLYGTMGE-K 419

Query: 1279 GANPDEYTYVLLIDTCFEQSRADDAAEYFGKMVESGLKPNLATYNKVVDGLIKAGKIDEA 1458
            G NPDE+TY LL+ +CF+++RADDAA YF KMV+SGL+PN+A YN +V  L+K GK+DEA
Sbjct: 420  GVNPDEFTYGLLMHSCFQKNRADDAAAYFRKMVDSGLRPNIAVYNILVGELVKLGKVDEA 479

Query: 1459 NGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEVLKLVSEMLKDEKVGLNSEMDEFVRDA 1638
              FF  M+ KL++DA+N++ +++AL E+ K+DEVL +V  +L D+ +  + E+ EFVR  
Sbjct: 480  KSFFDLMVKKLKMDASNYQFIMKALSESGKMDEVLNVVDTLLDDDGIEFSEELQEFVRGE 539

Query: 1639 LRKEGREGDL 1668
            LRKE RE DL
Sbjct: 540  LRKEDREEDL 549


>ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355491295|gb|AES72498.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 704

 Score =  605 bits (1561), Expect = e-170
 Identities = 307/520 (59%), Positives = 388/520 (74%), Gaps = 6/520 (1%)
 Frame = +1

Query: 127  RCLSYATPEEXXXXXXXXXXTLLIEPPLNSLRPQRRXXXXXXXXXXXXXXXXXXX----- 291
            R LS+A+PEE           L IEPPL++L   ++                        
Sbjct: 31   RFLSFASPEEAAAERRRRKRQLRIEPPLSALNRNQQQSPNPNPKSQSPPYYLNPTDPKLP 90

Query: 292  EHVSALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSR 471
            EH SAL G R++LHN ILTLIR+NDLDEAALYTRHSIYSNC+PTIFT NAV+ AL RQSR
Sbjct: 91   EHASALTGNRVNLHNTILTLIRQNDLDEAALYTRHSIYSNCRPTIFTINAVLFALFRQSR 150

Query: 472  YSDMLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYR 651
            YSD+LSLHRF+TQAGV  N++T+NL+   Y DCRK DTALE++KQ I +APF+PSPTT+R
Sbjct: 151  YSDLLSLHRFITQAGVVPNIITYNLIFQTYLDCRKPDTALENFKQFIKDAPFNPSPTTFR 210

Query: 652  ILVKGLVDNLKVDRAVELKDEMLEKGLAADPVVYNYLMLGLVKNEDGDRALALYEELKGK 831
            IL+KGLVDN ++DRA+++KD+M   G A DP+VY+YLMLG  ++ DGD  L +YEELK K
Sbjct: 211  ILIKGLVDNNRLDRAMDIKDQMNASGFAPDPLVYHYLMLGHARSSDGDGVLRVYEELKEK 270

Query: 832  L-DFVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGK 1008
            L   V DG+V G LMK YFLKG++KEAME Y ++  EG   KM+ +AYNSVL AL KNGK
Sbjct: 271  LGGVVEDGVVLGCLMKGYFLKGMEKEAMECYQEVFVEGK--KMSDIAYNSVLDALAKNGK 328

Query: 1009 SDEALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIDVFRKMGEKRCSPDT 1188
             DEA++LF+RM +EH+PP KL VNLGS+NVMVD +C +GKF +AI+VFR MGE RC PDT
Sbjct: 329  FDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDT 388

Query: 1189 LSFNNLIQQLCVNDLMPKAEELYREMGEIPGANPDEYTYVLLIDTCFEQSRADDAAEYFG 1368
            LSFNNLI+QLC N ++ +AEE+Y EM E  G NPDEYTY LL+DTCF+++R DDAA YF 
Sbjct: 389  LSFNNLIEQLCNNGMILEAEEVYGEM-EGKGVNPDEYTYGLLMDTCFKENRPDDAASYFK 447

Query: 1369 KMVESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAK 1548
            KMVESGL+PNLA YN++VDGL+K GKID+A  FF  M+ KL++D A+++ M++ L EA +
Sbjct: 448  KMVESGLRPNLAVYNRLVDGLVKVGKIDDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGR 507

Query: 1549 LDEVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 1668
            LD+VL++V+ +L D  V  + E  EFV+  LRKEGRE DL
Sbjct: 508  LDDVLQIVNMLLDDNGVDFDEEFQEFVKVELRKEGREEDL 547