BLASTX nr result
ID: Coptis21_contig00006935
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00006935
(773 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278671.2| PREDICTED: zinc finger protein VAR3, chlorop... 181 1e-43
ref|NP_001051041.1| Os03g0708900 [Oryza sativa Japonica Group] g... 171 2e-40
ref|XP_004160413.1| PREDICTED: zinc finger protein VAR3, chlorop... 167 3e-39
ref|XP_004137347.1| PREDICTED: zinc finger protein VAR3, chlorop... 167 3e-39
ref|XP_002466591.1| hypothetical protein SORBIDRAFT_01g010560 [S... 166 7e-39
>ref|XP_002278671.2| PREDICTED: zinc finger protein VAR3, chloroplastic-like [Vitis
vinifera] gi|297734333|emb|CBI15580.3| unnamed protein
product [Vitis vinifera]
Length = 410
Score = 181 bits (460), Expect = 1e-43
Identities = 80/151 (52%), Positives = 97/151 (64%)
Frame = +2
Query: 20 GMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSCPQ 199
G R+ +EMK+GDW CP C FMNF+RNIRCL+C+A+GP+RV+ I KKGDW+CPQ
Sbjct: 279 GPKRDSLNVIEMKKGDWTCPECNFMNFSRNIRCLKCRAEGPKRVDAADIPMKKGDWNCPQ 338
Query: 200 CQFMNFARNTKCIRPHCGEPRPKRDLKPGEWECPKCDFLNYRRNKFCLKCXXXXXXXXXX 379
C FMNFA T+C R C EPRPKR L PGEWECP CDF+NYRRN CLKC
Sbjct: 339 CAFMNFASKTECFR--CREPRPKRQLNPGEWECPSCDFVNYRRNTVCLKCNR-------- 388
Query: 380 XXXXXXXXXXXXCDKPKDEVAEYEDIIWKRP 472
D+PK+ YE+ +WK+P
Sbjct: 389 -------------DQPKEAATPYEEHVWKKP 406
Score = 84.7 bits (208), Expect = 2e-14
Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +2
Query: 14 SQGMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSC 193
++G R + D+ MK+GDW CP C FMNFA C C+ P+R G+W C
Sbjct: 316 AEGPKRVDAADIPMKKGDWNCPQCAFMNFASKTECFRCREPRPKR------QLNPGEWEC 369
Query: 194 PQCQFMNFARNTKCIRPHCGEPRPKRDLKPGE---WECP 301
P C F+N+ RNT C++ C +PK P E W+ P
Sbjct: 370 PSCDFVNYRRNTVCLK--CNRDQPKEAATPYEEHVWKKP 406
>ref|NP_001051041.1| Os03g0708900 [Oryza sativa Japonica Group]
gi|108710694|gb|ABF98489.1| Zn-finger in Ran binding
protein and others containing protein, expressed [Oryza
sativa Japonica Group] gi|113549512|dbj|BAF12955.1|
Os03g0708900 [Oryza sativa Japonica Group]
gi|215707047|dbj|BAG93507.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218193617|gb|EEC76044.1| hypothetical protein
OsI_13224 [Oryza sativa Indica Group]
gi|222625654|gb|EEE59786.1| hypothetical protein
OsJ_12297 [Oryza sativa Japonica Group]
Length = 504
Score = 171 bits (432), Expect = 2e-40
Identities = 72/115 (62%), Positives = 86/115 (74%)
Frame = +2
Query: 5 PRVSQGMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGD 184
P+ S G GRE + + EMK+GDW+CPNC F+NFARN CLECKADGP+++ + + K GD
Sbjct: 274 PKFSAGKGRETT-ETEMKKGDWLCPNCNFLNFARNRHCLECKADGPKKIETATTEMKTGD 332
Query: 185 WSCPQCQFMNFARNTKCIRPHCGEPRPKRDLKPGEWECPKCDFLNYRRNKFCLKC 349
W CPQC FMNFARN C + C E RPKR L PGEWECP C F+N+RRNK CLKC
Sbjct: 333 WICPQCHFMNFARNKMCFK--CEESRPKRQLIPGEWECPSCSFVNFRRNKVCLKC 385
>ref|XP_004160413.1| PREDICTED: zinc finger protein VAR3, chloroplastic-like [Cucumis
sativus]
Length = 445
Score = 167 bits (422), Expect = 3e-39
Identities = 74/153 (48%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Frame = +2
Query: 20 GMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSCPQ 199
G R D+EMK GDWICP C FMNF+RNIRC++CK +GP++VN++ + KKGDW CPQ
Sbjct: 305 GPKRVRENDIEMKSGDWICPECKFMNFSRNIRCIKCKTEGPKKVNVEQAEMKKGDWVCPQ 364
Query: 200 CQFMNFARNTKCIRPHCGEPRPKRDLKPGEWECPKCDFLNYRRNKFCLKCXXXXXXXXXX 379
C FMNFA N KC+R C E RPKR+L GEWECP C ++N+R N C KC
Sbjct: 365 CSFMNFASNKKCLR--CRELRPKRELNRGEWECPMCAYVNFRGNMSCRKC---------- 412
Query: 380 XXXXXXXXXXXXCDKPKDEVA-EYEDIIWKRPR 475
++P+ E++ EYE+ +W+ PR
Sbjct: 413 -----------NAERPEQEISDEYEEQLWESPR 434
Score = 82.8 bits (203), Expect = 8e-14
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = +2
Query: 14 SQGMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSC 193
++G + + EMK+GDW+CP C+FMNFA N +CL C+ P+R + +G+W C
Sbjct: 342 TEGPKKVNVEQAEMKKGDWVCPQCSFMNFASNKKCLRCRELRPKR------ELNRGEWEC 395
Query: 194 PQCQFMNFARNTKCIRPHCGEPRPKRDL----KPGEWECPK 304
P C ++NF N C + C RP++++ + WE P+
Sbjct: 396 PMCAYVNFRGNMSCRK--CNAERPEQEISDEYEEQLWESPR 434
>ref|XP_004137347.1| PREDICTED: zinc finger protein VAR3, chloroplastic-like [Cucumis
sativus]
Length = 445
Score = 167 bits (422), Expect = 3e-39
Identities = 74/153 (48%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Frame = +2
Query: 20 GMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSCPQ 199
G R D+EMK GDWICP C FMNF+RNIRC++CK +GP++VN++ + KKGDW CPQ
Sbjct: 305 GPKRVRENDIEMKSGDWICPECKFMNFSRNIRCIKCKTEGPKKVNVEQAEMKKGDWVCPQ 364
Query: 200 CQFMNFARNTKCIRPHCGEPRPKRDLKPGEWECPKCDFLNYRRNKFCLKCXXXXXXXXXX 379
C FMNFA N KC+R C E RPKR+L GEWECP C ++N+R N C KC
Sbjct: 365 CSFMNFASNKKCLR--CRELRPKRELNRGEWECPMCAYVNFRGNMSCRKC---------- 412
Query: 380 XXXXXXXXXXXXCDKPKDEVA-EYEDIIWKRPR 475
++P+ E++ EYE+ +W+ PR
Sbjct: 413 -----------NAERPEQEISDEYEEQLWESPR 434
Score = 82.8 bits (203), Expect = 8e-14
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = +2
Query: 14 SQGMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSC 193
++G + + EMK+GDW+CP C+FMNFA N +CL C+ P+R + +G+W C
Sbjct: 342 TEGPKKVNVEQAEMKKGDWVCPQCSFMNFASNKKCLRCRELRPKR------ELNRGEWEC 395
Query: 194 PQCQFMNFARNTKCIRPHCGEPRPKRDL----KPGEWECPK 304
P C ++NF N C + C RP++++ + WE P+
Sbjct: 396 PMCAYVNFRGNMSCRK--CNAERPEQEISDEYEEQLWESPR 434
>ref|XP_002466591.1| hypothetical protein SORBIDRAFT_01g010560 [Sorghum bicolor]
gi|241920445|gb|EER93589.1| hypothetical protein
SORBIDRAFT_01g010560 [Sorghum bicolor]
Length = 556
Score = 166 bits (419), Expect = 7e-39
Identities = 69/112 (61%), Positives = 84/112 (75%)
Frame = +2
Query: 14 SQGMGREPSKDVEMKRGDWICPNCTFMNFARNIRCLECKADGPRRVNIDSIDKKKGDWSC 193
S G GRE + VEMK+GDW+C NC F+NFARN+RC ECKADGP+++ + + K GDW C
Sbjct: 291 SDGKGRETTA-VEMKKGDWLCTNCNFLNFARNVRCRECKADGPKKIEVAMAEMKMGDWIC 349
Query: 194 PQCQFMNFARNTKCIRPHCGEPRPKRDLKPGEWECPKCDFLNYRRNKFCLKC 349
QCQFMNF+RN C + C EPRPKR L PGEWECP CD++N+RRN C KC
Sbjct: 350 TQCQFMNFSRNNICFK--CEEPRPKRQLNPGEWECPSCDYVNFRRNILCKKC 399