BLASTX nr result

ID: Coptis21_contig00006791 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006791
         (615 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509922.1| conserved hypothetical protein [Ricinus comm...   114   1e-23
ref|XP_002304545.1| predicted protein [Populus trichocarpa] gi|2...   111   1e-22
gb|ABK96351.1| unknown [Populus trichocarpa x Populus deltoides]      109   3e-22
gb|AEW43293.1| hypothetical protein [Hevea brasiliensis]              105   8e-21
ref|XP_002280531.1| PREDICTED: uncharacterized protein LOC100261...   101   1e-19

>ref|XP_002509922.1| conserved hypothetical protein [Ricinus communis]
           gi|223549821|gb|EEF51309.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 94

 Score =  114 bits (285), Expect = 1e-23
 Identities = 49/91 (53%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
 Frame = +1

Query: 106 MTEAGCRKSSYNLNGLPTSG---THSSRGRCEYFEMPLHYPRYKKEDYETMPEWQLDCLL 276
           M+   C  +++ ++GL  +G     + R +C  F+MPLHYPR+KK DYETMPEW+LDCLL
Sbjct: 1   MSGITCSNTAHAVSGLRPNGHQKQENKRDKCSCFQMPLHYPRFKKGDYETMPEWRLDCLL 60

Query: 277 NQYGLPVIGDVAHKRNFAMGAFLWPSQINKK 369
            +YGLP++GDV  KR FAMGAFLWPS++  +
Sbjct: 61  KEYGLPIVGDVNQKRKFAMGAFLWPSELENE 91


>ref|XP_002304545.1| predicted protein [Populus trichocarpa] gi|222841977|gb|EEE79524.1|
           predicted protein [Populus trichocarpa]
          Length = 92

 Score =  111 bits (277), Expect = 1e-22
 Identities = 47/62 (75%), Positives = 51/62 (82%)
 Frame = +1

Query: 172 SSRGRCEYFEMPLHYPRYKKEDYETMPEWQLDCLLNQYGLPVIGDVAHKRNFAMGAFLWP 351
           S RG C  F+MPLHYPRYKK DYETMPEW+LDCLL +YGLP IGD   KR FAMGAFLWP
Sbjct: 29  SKRGTCSCFQMPLHYPRYKKSDYETMPEWRLDCLLKEYGLPAIGDANQKRKFAMGAFLWP 88

Query: 352 SQ 357
           S+
Sbjct: 89  SE 90


>gb|ABK96351.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 92

 Score =  109 bits (273), Expect = 3e-22
 Identities = 47/62 (75%), Positives = 51/62 (82%)
 Frame = +1

Query: 172 SSRGRCEYFEMPLHYPRYKKEDYETMPEWQLDCLLNQYGLPVIGDVAHKRNFAMGAFLWP 351
           S RG C  F+MPLHYPRYKK DYETMPEW+LDCLL +YGLP IGD   KR FAMGAFLWP
Sbjct: 29  SKRGTCSCFQMPLHYPRYKKCDYETMPEWRLDCLLKEYGLPAIGDANQKRKFAMGAFLWP 88

Query: 352 SQ 357
           S+
Sbjct: 89  SE 90


>gb|AEW43293.1| hypothetical protein [Hevea brasiliensis]
          Length = 79

 Score =  105 bits (261), Expect = 8e-21
 Identities = 44/72 (61%), Positives = 56/72 (77%)
 Frame = +1

Query: 139 NLNGLPTSGTHSSRGRCEYFEMPLHYPRYKKEDYETMPEWQLDCLLNQYGLPVIGDVAHK 318
           N+ G P S    ++ RC YF+MPLHYPRY   +Y+TMPEW+LDCLL +YGLP+ G+V +K
Sbjct: 10  NIGGRPNS--EHAKDRCGYFQMPLHYPRYTHAEYDTMPEWKLDCLLKEYGLPITGNVEYK 67

Query: 319 RNFAMGAFLWPS 354
           R FAMGAFLWP+
Sbjct: 68  RKFAMGAFLWPN 79


>ref|XP_002280531.1| PREDICTED: uncharacterized protein LOC100261908 [Vitis vinifera]
           gi|297745397|emb|CBI40477.3| unnamed protein product
           [Vitis vinifera]
          Length = 80

 Score =  101 bits (251), Expect = 1e-19
 Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 5/72 (6%)
 Frame = +1

Query: 151 LPTSGTHSSRG-----RCEYFEMPLHYPRYKKEDYETMPEWQLDCLLNQYGLPVIGDVAH 315
           +PT G+  + G     RC  F+MPLHYPRY + DYETMPEW++DCLL +YGLPV G V  
Sbjct: 8   IPTVGSAGANGLQGRDRCGQFQMPLHYPRYTQADYETMPEWKIDCLLAEYGLPVTGGVEQ 67

Query: 316 KRNFAMGAFLWP 351
           KR FAMGAFLWP
Sbjct: 68  KRKFAMGAFLWP 79


Top