BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006746
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17575.3| unnamed protein product [Vitis vinifera]              129   2e-28
ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|XP_002525094.1| pentatricopeptide repeat-containing protein,...   111   5e-23
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...    99   4e-19
ref|NP_001064427.1| Os10g0358700 [Oryza sativa Japonica Group] g...    99   5e-19

>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  129 bits (324), Expect = 2e-28
 Identities = 65/133 (48%), Positives = 89/133 (66%)
 Frame = +1

Query: 1   VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 180
           V +G+SLG YL +L+IY+LG  + P S  ++F  LPDDQK T  YTAL+ AYF S  VDK
Sbjct: 524 VRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDK 583

Query: 181 GLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEE 360
           GL I+ TM+R  +  +  TY LL+ GL++ GR  EAE Y KE++++      Q+ VSM+E
Sbjct: 584 GLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDE 643

Query: 361 HLCELLFSGGVAS 399
            +C LLFSG + S
Sbjct: 644 KICNLLFSGNLVS 656


>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Vitis vinifera]
          Length = 519

 Score =  129 bits (324), Expect = 2e-28
 Identities = 65/133 (48%), Positives = 89/133 (66%)
 Frame = +1

Query: 1   VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 180
           V +G+SLG YL +L+IY+LG  + P S  ++F  LPDDQK T  YTAL+ AYF S  VDK
Sbjct: 387 VRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDK 446

Query: 181 GLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEE 360
           GL I+ TM+R  +  +  TY LL+ GL++ GR  EAE Y KE++++      Q+ VSM+E
Sbjct: 447 GLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDE 506

Query: 361 HLCELLFSGGVAS 399
            +C LLFSG + S
Sbjct: 507 KICNLLFSGNLVS 519


>ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535553|gb|EEF37221.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  111 bits (278), Expect = 5e-23
 Identities = 55/128 (42%), Positives = 83/128 (64%)
 Frame = +1

Query: 10  GVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGLD 189
           G SLG YL +L+I++LGS + P    +IF  LPD+QK T TYTA++G YF +    K L 
Sbjct: 343 GHSLGLYLSALLIHRLGSARRPNCAAKIFDLLPDEQKCTATYTAMIGVYFSAGSAAKALK 402

Query: 190 IFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHLC 369
           I+ TM++N +  S  TY +L+ GL+++GRV E + + KE+RS+         + MEE +C
Sbjct: 403 IYKTMKKNSINPSLGTYNVLLAGLEKSGRVCETDNFRKEKRSLMADGNRLSCLPMEEKIC 462

Query: 370 ELLFSGGV 393
           +LLF+G +
Sbjct: 463 DLLFAGSL 470


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355525131|gb|AET05585.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 687

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 52/129 (40%), Positives = 79/129 (61%)
 Frame = +1

Query: 7   SGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGL 186
           +G SLG YL SL+IY+LG  +  +  L+IF  LPD+ K   TYTAL+  YF +R V+K L
Sbjct: 557 AGHSLGIYLASLLIYRLGCARQLSIALKIFNLLPDNHKCVATYTALISIYFSARRVNKAL 616

Query: 187 DIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHL 366
           +I+  M + G   +  T+ +L+ GL+  GR  EA  + K ++++      QE +S E  +
Sbjct: 617 EIYKIMCQKGNCPTSGTFNILVAGLERNGRFSEAGVHRKAKKNLNSNIGSQENLSTEGRI 676

Query: 367 CELLFSGGV 393
           C+LLF+G V
Sbjct: 677 CDLLFAGDV 685


>ref|NP_001064427.1| Os10g0358700 [Oryza sativa Japonica Group]
           gi|110288952|gb|AAP53278.2| pentatricopeptide, putative,
           expressed [Oryza sativa Japonica Group]
           gi|110288953|gb|ABG66030.1| pentatricopeptide, putative,
           expressed [Oryza sativa Japonica Group]
           gi|113639036|dbj|BAF26341.1| Os10g0358700 [Oryza sativa
           Japonica Group] gi|215712262|dbj|BAG94389.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215715192|dbj|BAG94943.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 548

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 59/127 (46%), Positives = 75/127 (59%)
 Frame = +1

Query: 1   VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 180
           + SG +LGTYL S++I KL      ++ +RIF  L  D KN VTYTALM AYF   +VDK
Sbjct: 418 IKSGCNLGTYLSSILIIKLACAGHSSTAVRIFGLLTTD-KNVVTYTALMSAYFQDGKVDK 476

Query: 181 GLDIFHTMRRNGVPASPSTYRLLIVGLKEAGRVYEAEKYIKEERSVQRGCFPQEAVSMEE 360
            L +F  M  NGV A P TY +LI GL+ AGR  E+E Y +E   +Q     +   S E+
Sbjct: 477 ALQLFLQMSANGVSACPGTYEVLIHGLQMAGRKQESEHYRRERMEMQWHLQYRNEHSPED 536

Query: 361 HLCELLF 381
            LC  LF
Sbjct: 537 SLCNHLF 543