BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00006600
         (2654 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268...   569   e-159
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu...   526   e-146
ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|2...   288   5e-75
ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|2...   249   4e-63
ref|XP_002889992.1| RNA recognition motif-containing protein [Ar...   225   5e-56

>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
            vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
            uncharacterized protein LOC100268141 isoform 2 [Vitis
            vinifera]
          Length = 647

 Score =  569 bits (1466), Expect = e-159
 Identities = 332/664 (50%), Positives = 390/664 (58%), Gaps = 20/664 (3%)
 Frame = +2

Query: 173  AEEQLDYGEEEY--SQKSQYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNDVNVGEGF 346
            AEEQLDY +EEY  +QK  +Q                             YNDVNVGEGF
Sbjct: 2    AEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDL------YNDVNVGEGF 55

Query: 347  LQQLHRSETLPLGAAAAGMVNGVESQAQKTEV-----EHATVPGVSIVPGKDLVGGRARV 511
            LQ +HRSE      A +G++ G   QA KT+V     E  T  G+ I+PG  + G  +  
Sbjct: 56   LQ-MHRSEA----PAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGL-IIPGVSIEGKYSNP 109

Query: 512  PEHSNK-------GVEEGPGGYQDGGS--QRVRLAQMSHDAHVGSDAGLQVAAPVPPKIG 664
              H  K       G E G   + DG S  Q+ R+ +M+HD  V  + G Q + P+P K G
Sbjct: 110  HFHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQV-RNLGFQGSTPIPQKTG 168

Query: 665  VVDPNLMPGNYVSGSSSLPNSAHDGPRGAPQLPVNRMGINTNYSP--ANENLNRPVAENS 838
              +P+ + G   + S+ + NS   GPR  PQ+  N+MG+N N +    NEN  RP  +N 
Sbjct: 169  A-EPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNG 227

Query: 839  TTMLFVGELHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDPNAAASCK 1018
             TMLFVGELHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGYCQVEF+D +AAA+CK
Sbjct: 228  ATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACK 287

Query: 1019 DGMNGHPFNGRPCVVAFASPQTLKQMGASYINKAQAQAQSQPQGRRP-NDGVGRGTGMNY 1195
            +GMNG+ FNGR CVVAFASPQTLKQMGASY+NK QAQ+QS  QGRRP NDGVGRG GMN 
Sbjct: 288  EGMNGYIFNGRACVVAFASPQTLKQMGASYMNKTQAQSQS--QGRRPMNDGVGRGGGMNM 345

Query: 1196 QGGDTGRNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVXXXXXXXXXXXXXXX 1375
            QGGD GRN+                                 NMV               
Sbjct: 346  QGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMRGRGGAVGAKNMV--GNTAGVGASGGGY 403

Query: 1376 XXXXXXXXXXXXXXXXXHPQNMMNAGFDPTXXXXXXXXXXXXXXXXXXXXXSYPTVNTVG 1555
                             HPQ MM +GFDPT                     S+P VNT+G
Sbjct: 404  GQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMG 463

Query: 1556 LPGVAPHVNPAFFGRGMPANXXXXXXXXXXXXHNPNMWTDTSMGGWGGEEQG-RTREXXX 1732
            L GVAPHVNPAFFGRGM AN            H+  MWTDTSMGGWGGEE G RTRE   
Sbjct: 464  LAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMWTDTSMGGWGGEEHGRRTRESSY 523

Query: 1733 XXXXXXXXXXXXXXXHERAGRSNAAPREKERGSERDWSGNSDRRHRDDREQEFDRPDKDR 1912
                           HE+ GRSN A REKERGSERDWSGNS+RRHRD+REQ+++R DKD 
Sbjct: 524  GGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDH 583

Query: 1913 RYREEKDGYRDQRQREREWDNGDDWDRGQPSSRARSKSSMIQEDDHRSRSRDVEYRKRRR 2092
            RYREEKDGYRD RQRER+++N DDWDRGQ SSR+RS+S  + ++DHRSRSRD +Y KRRR
Sbjct: 584  RYREEKDGYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRR 643

Query: 2093 LPSE 2104
            LPSE
Sbjct: 644  LPSE 647


>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
            gi|223546091|gb|EEF47594.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 644

 Score =  526 bits (1354), Expect = e-146
 Identities = 313/658 (47%), Positives = 368/658 (55%), Gaps = 14/658 (2%)
 Frame = +2

Query: 173  AEEQLDYGEEEY--SQKSQYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNDVNVGEGF 346
            A+EQ+DY +EEY  +QK QYQ                             YNDVN+GE F
Sbjct: 2    ADEQIDYEDEEYGGAQKLQYQGSGAIPALAEEEMGEDDEYDDL-------YNDVNIGENF 54

Query: 347  LQQLHRSETLP----LGAAAAGMVNGVESQAQKTEVEHATVPGVSIVPGKDLVGGRARVP 514
            LQ +HRSE  P    +G       N  + + +    +   +PGV+ V  K   G     P
Sbjct: 55   LQ-MHRSEAPPAPPSVGNGGFQPRNSNDLRVESGGSQGLNIPGVA-VESKYSTG--THFP 110

Query: 515  EHSNKGVEEGPGGYQDGGS--QRVRLAQMSHDAHVGSDAGLQVAAPVPPKIGVVDPNLMP 688
            E + KG E G  GY DG S  Q+ R+ +M++D+    + G Q +   P  IGV DP+ M 
Sbjct: 111  EQNVKGPEIGSVGYPDGSSIAQKTRVMEMTNDSQA-RNMGFQGSTSGPSNIGV-DPSDMN 168

Query: 689  GNYVSGSSSLPNSAHDGPRGAPQLPVNRMGIN--TNYSPANENLNRPVAENSTTMLFVGE 862
                +  + +PN+    PR  PQLP ++M +N  TN S  NEN  RP  EN +TML+VGE
Sbjct: 169  NKISNDPTPVPNAGV--PRVIPQLPASQMNMNMDTNRSATNENQIRPPLENGSTMLYVGE 226

Query: 863  LHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDPNAAASCKDGMNGHPF 1042
            LHWWTTDAELE VLSQYG VKEIKFFDERASGKSKGYCQVEF+D  AAA+CK+GMNGH F
Sbjct: 227  LHWWTTDAELENVLSQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAAACKEGMNGHLF 286

Query: 1043 NGRPCVVAFASPQTLKQMGASYINKAQAQAQSQPQGRRP-NDGVGRGTGMNYQGGDTGRN 1219
            NGR CVVAFAS QTLKQMGASY+NK Q Q QSQ QGRRP NDG GRG  MNYQGGD GRN
Sbjct: 287  NGRACVVAFASQQTLKQMGASYMNKNQGQPQSQNQGRRPMNDGAGRGGNMNYQGGDAGRN 346

Query: 1220 FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVXXXXXXXXXXXXXXXXXXXXXXX 1399
            F                                 N+V                       
Sbjct: 347  FGRGGWGRGGQGILNRGPGGGGRMGGRGGSMGAKNIVGGAGGVGSGANGGGYGQGLAGPA 406

Query: 1400 XXXXXXXXXHPQNMMNAGFDPTXXXXXXXXXXXXXXXXXXXXXSYPTVNTVGLPGVAPHV 1579
                      PQ+MM AGFDPT                     S+P VN +GL GVAPHV
Sbjct: 407  FGGPAGAMLPPQSMMRAGFDPTYMGRGAGYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHV 466

Query: 1580 NPAFFGRGMPANXXXXXXXXXXXXHNPNMWTDTSMGGWGGEEQGRTREXXXXXXXXXXXX 1759
            NPAFFGRGM  N             N  MW+DTSMGGWG E   RTRE            
Sbjct: 467  NPAFFGRGMAPNGMGMMGPSGMDGPNAGMWSDTSMGGWGEEPGRRTRESSYGGDDGASEY 526

Query: 1760 XXXXXXHERAGRSNAAPREKERGSERDWSGNSDRRHRDDREQEFDRPD---KDRRYREEK 1930
                  HE+  RS+AA REKER SERDWSGNSDRRHRDDRE ++DR +   K+ RYREEK
Sbjct: 527  GYGEVNHEKGARSSAASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEK 586

Query: 1931 DGYRDQRQREREWDNGDDWDRGQPSSRARSKSSMIQEDDHRSRSRDVEYRKRRRLPSE 2104
            + YRD RQRER+    DDWDRGQ SSR+RS+S  + E+D+RSRSRD +Y KRRRLPSE
Sbjct: 587  ESYRDHRQRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRSRSRDADYGKRRRLPSE 644


>ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|222852472|gb|EEE90019.1|
            predicted protein [Populus trichocarpa]
          Length = 619

 Score =  288 bits (737), Expect = 5e-75
 Identities = 168/314 (53%), Positives = 198/314 (63%), Gaps = 12/314 (3%)
 Frame = +2

Query: 317  YNDVNVGEGFLQQLHRSETLPLGAAAAGMVNGVESQAQKTEVEHATVPGVSIVPGKDLVG 496
            YNDVNVGE FLQ +H SE  P   A  G        A ++ +E      ++I  G   V 
Sbjct: 35   YNDVNVGENFLQ-MHGSEA-PAPPATVGNGGFQTRNAHESRIETGGSQALAITGGGPAVE 92

Query: 497  G-----RARVPEHSNKGV--EEGPGGYQDGGS--QRVRLAQMSHDAHVGSDAGLQVAAPV 649
            G     +A  PE     V  E    G  DG S  Q+ R+ +MSHD  V  + G Q + PV
Sbjct: 93   GIYSNAKAHFPEQKQVAVAVEAQDVGPVDGSSVAQKGRVIEMSHDVQV-RNMGFQKSTPV 151

Query: 650  PPKIGVVDPNLMPGNYVSGSSSLPNSAHDGPRGAPQLPVNRMGINT--NYSPANENLNRP 823
            PP IGV DP+ M          LP +   GPRGAPQ+ VN+M ++   N    NEN  RP
Sbjct: 152  PPGIGV-DPSDMSRKNAIEPEPLPITGSAGPRGAPQMQVNQMHMSADVNRPVVNENQVRP 210

Query: 824  VAENSTTMLFVGELHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDPNA 1003
              EN +T L+VGELHWWTTDAELE   SQ+GRVKEIKFFDERASGKSKGYCQV+F++  A
Sbjct: 211  PIENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERASGKSKGYCQVDFYEAAA 270

Query: 1004 AASCKDGMNGHPFNGRPCVVAFASPQTLKQMGASYINKAQAQAQSQPQGR-RPNDGVGRG 1180
            AA+CK+GMNGH FNGRPCVVAFASPQTLKQMGASY+NK Q Q Q+Q QGR   NDG GRG
Sbjct: 271  AAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQSQGRGSMNDGAGRG 330

Query: 1181 TGMNYQGGDTGRNF 1222
               N+Q GD GRN+
Sbjct: 331  GNANFQSGDGGRNY 344



 Score =  212 bits (540), Expect = 4e-52
 Identities = 112/225 (49%), Positives = 131/225 (58%)
 Frame = +2

Query: 1430 PQNMMNAGFDPTXXXXXXXXXXXXXXXXXXXXXSYPTVNTVGLPGVAPHVNPAFFGRGMP 1609
            PQ MM AGFDP                      S+P VN++GL GVAPHVNPAFF RGM 
Sbjct: 412  PQGMMGAGFDPLYMGRGGGYGGFAGPGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARGMA 471

Query: 1610 ANXXXXXXXXXXXXHNPNMWTDTSMGGWGGEEQGRTREXXXXXXXXXXXXXXXXXXHERA 1789
             N             NP MW  +  G  G  E G                      HE+ 
Sbjct: 472  PNGMGMMVSSGMDGPNPGMWESSYDGDEGASEYG-----------------YGEGNHEKG 514

Query: 1790 GRSNAAPREKERGSERDWSGNSDRRHRDDREQEFDRPDKDRRYREEKDGYRDQRQREREW 1969
             RS+ A REKERGSERDWSGNSDRRHRD+REQ++DRP+++ RY+EEKD YR  RQRER+ 
Sbjct: 515  ARSSGASREKERGSERDWSGNSDRRHRDEREQDWDRPEREHRYKEEKDSYRGHRQRERDS 574

Query: 1970 DNGDDWDRGQPSSRARSKSSMIQEDDHRSRSRDVEYRKRRRLPSE 2104
               DD DRG  SSRARS+S    E+D+RSR+RDV+Y KRRRLPSE
Sbjct: 575  GYEDDRDRGHSSSRARSRSRAAPEEDYRSRTRDVDYGKRRRLPSE 619


>ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|222864687|gb|EEF01818.1|
            predicted protein [Populus trichocarpa]
          Length = 573

 Score =  249 bits (635), Expect = 4e-63
 Identities = 154/305 (50%), Positives = 176/305 (57%), Gaps = 3/305 (0%)
 Frame = +2

Query: 317  YNDVNVGEGFLQQLHRSETLPLGAAAAGMVNGVESQAQKTEVEHATVPGVSIVPGKDLVG 496
            YNDVNVGE FLQ +H SE  P   A AG        A ++ VE                 
Sbjct: 35   YNDVNVGENFLQ-MHGSEA-PAPPATAGNGGFQTRNAHESRVET---------------- 76

Query: 497  GRARVPEHSNKGVEEGPGGYQDGGSQRVRLAQMSHDAHVGSDAGLQVAAPVPPKIGVVDP 676
            G ++V   S  GV    G Y + G+      Q          AG+ V A     IG  D 
Sbjct: 77   GGSQVLATSGAGVAV-EGKYSNAGAHFPEQKQ----------AGIGVEANDVGSIGYGD- 124

Query: 677  NLMPGNYVSGSSSLPNSAHDGPRGAPQLPVNRMGINT--NYSPANENLNRPVAENSTTML 850
                       SS+      GPRG PQ+ VN+M +N   N    NEN  RP  EN  T L
Sbjct: 125  ----------GSSVAQKGSAGPRGVPQMQVNQMNMNADVNRPVVNENQVRPPIENGPTTL 174

Query: 851  FVGELHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDPNAAASCKDGMN 1030
            +VGELHWWTTDAELE V SQYGRVKEIKFFDERASGKSKGYCQV+F++  AAA+CK+GMN
Sbjct: 175  YVGELHWWTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMN 234

Query: 1031 GHPFNGRPCVVAFASPQTLKQMGASYINKAQAQAQSQPQGR-RPNDGVGRGTGMNYQGGD 1207
             H FNGRPCVVAFAS QTLKQMGASY++K Q Q Q Q QGR   NDG+GRG   NYQ GD
Sbjct: 235  EHVFNGRPCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQSGD 294

Query: 1208 TGRNF 1222
             GRN+
Sbjct: 295  GGRNY 299



 Score =  191 bits (486), Expect = 7e-46
 Identities = 108/226 (47%), Positives = 126/226 (55%)
 Frame = +2

Query: 1427 HPQNMMNAGFDPTXXXXXXXXXXXXXXXXXXXXXSYPTVNTVGLPGVAPHVNPAFFGRGM 1606
            H Q MM AGFDP                      S+P VN++GL GVAPHVNPAFF RGM
Sbjct: 366  HHQGMMGAGFDPLYMGRGGGYGGFPGHGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARGM 425

Query: 1607 PANXXXXXXXXXXXXHNPNMWTDTSMGGWGGEEQGRTREXXXXXXXXXXXXXXXXXXHER 1786
              N             NP   +    G  G  E G                      HE+
Sbjct: 426  APNGMGMMASSGMEGPNPGKESSYD-GDEGASEYG-----------------YGEGNHEK 467

Query: 1787 AGRSNAAPREKERGSERDWSGNSDRRHRDDREQEFDRPDKDRRYREEKDGYRDQRQRERE 1966
              RS+ A REKER SERDWSGNSDRRHRD+REQ++DR +++ +YREEKD YR  RQRER+
Sbjct: 468  GARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRGHRQRERD 527

Query: 1967 WDNGDDWDRGQPSSRARSKSSMIQEDDHRSRSRDVEYRKRRRLPSE 2104
                DD DRG  SSRARS+S    E+D+RSRSRDV+Y KRRR PSE
Sbjct: 528  SGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVDYGKRRRPPSE 573


>ref|XP_002889992.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
            lyrata] gi|297335834|gb|EFH66251.1| RNA recognition
            motif-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 573

 Score =  225 bits (573), Expect = 5e-56
 Identities = 145/324 (44%), Positives = 182/324 (56%), Gaps = 22/324 (6%)
 Frame = +2

Query: 317  YNDVNVGEGFLQQLHRSETLPLGAAAAGMVNGVESQAQKTEVEHATVPGVSIVPGKDLVG 496
            Y+DVNVGE F Q    +   P   A  G       QAQ + V  A  P + IV G  + G
Sbjct: 40   YSDVNVGESFFQ----AHNQPQPPAQVGGTGNASLQAQTSHV--AAEPRMGIVSGGTVEG 93

Query: 497  GRARVPEHSNKGVEEGPGG-------YQDGGS----------QRVRLAQMSHDAHVGSDA 625
                  ++ N G   G  G       Y    S          Q  ++ Q    + V ++ 
Sbjct: 94   ------KYRNDGGHNGISGPDTRSDVYPQASSFGAKGLNIDIQSNKIGQQGSTSVVLNNH 147

Query: 626  GLQVAAPVPPKIGVVDPNLMPGNYVSGSSSLPNSAHDGPRGAPQLPVNRMGINTNYSPAN 805
            G    A   P++ V +P   P                 P+GA Q+PV++M +N N    N
Sbjct: 148  GFSGNAVNVPELPVHNPYGAP-----------------PQGAQQIPVSQMSVNPNVM-MN 189

Query: 806  ENLNRP-VAENSTTMLFVGELHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGYCQV 982
            ++  +P V +N  TMLFVGELHWWTTDAE+E VLSQYGRVKEIKFFDER SGKSKGYCQV
Sbjct: 190  KSPTQPFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQV 249

Query: 983  EFFDPNAAASCKDGMNGHPFNGRPCVVAFASPQTLKQMGASYINKAQAQAQSQPQGRRP- 1159
            EF+D  AAASCK+GMNG+ FNG+ CVVAFASP+TLKQMGA++  +   Q Q+Q Q RRP 
Sbjct: 250  EFYDSAAAASCKEGMNGYIFNGKACVVAFASPETLKQMGANFTGR--NQGQNQIQNRRPL 307

Query: 1160 NDGVGRG---TGMNYQGGDTGRNF 1222
            N+G+GRG     MN Q GD GRN+
Sbjct: 308  NEGMGRGNNNNNMNTQNGDGGRNY 331



 Score =  126 bits (317), Expect = 3e-26
 Identities = 90/227 (39%), Positives = 113/227 (49%), Gaps = 5/227 (2%)
 Frame = +2

Query: 1427 HPQNMMNAG-FDPTXXXXXXXXXXXXXXXXXXXXXSYPTVNTVGLPGVAPHVNPAFFGRG 1603
            HPQ MM AG FDPT                     SYP VN +G+ GVAPHVNPAFFG G
Sbjct: 385  HPQGMMGAGGFDPTFMGRGGGFGGYSGIAYPGMPHSYPGVNAMGMVGVAPHVNPAFFGTG 444

Query: 1604 MPANXXXXXXXXXXXXHNPNMWTDTSMGGW--GGEEQGRTREXXXXXXXXXXXXXXXXXX 1777
            M               H   MW++ + GG   GG E G   +                  
Sbjct: 445  MGT----MGSAGMNGVHAAAMWSEANGGGGEEGGSEYGGYED------------------ 482

Query: 1778 HERAGRSNAAPREKERGS-ERDWSGNS-DRRHRDDREQEFDRPDKDRRYREEKDGYRDQR 1951
             E   +     R+KER + ERDWS NS DRRH+               +REEKD +R+ +
Sbjct: 483  -ETQEKEEKPSRDKERATTERDWSENSGDRRHKS--------------HREEKDSHREYK 527

Query: 1952 QREREWDNGDDWDRGQPSSRARSKSSMIQEDDHRSRSRDVEYRKRRR 2092
            Q +R+ D+ D++DRGQ S ++RS+S M  EDDHRSRSRD +Y KRRR
Sbjct: 528  Q-QRDRDS-DEFDRGQSSVKSRSRSRM-SEDDHRSRSRDADYGKRRR 571