BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005938
         (1232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [S...   597   e-168
ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium d...   593   e-167
ref|XP_002272683.1| PREDICTED: DNA ligase 1 [Vitis vinifera] gi|...   592   e-167
tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays]    591   e-166
ref|XP_004145818.1| PREDICTED: DNA ligase 1-like [Cucumis sativus]    587   e-165

>ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [Sorghum bicolor]
            gi|241918309|gb|EER91453.1| hypothetical protein
            SORBIDRAFT_01g018700 [Sorghum bicolor]
          Length = 905

 Score =  597 bits (1539), Expect = e-168
 Identities = 295/404 (73%), Positives = 347/404 (85%)
 Frame = -3

Query: 1212 QLKSKSLEFKPNISAYWKQGESVPFLFLAKAFDLIANESSRITITEILCNVFRTVIHPTP 1033
            +LK K  EF P  +AYWK GE VPFLFLA+A DLI+NES RI ITEIL NVFRTV+  TP
Sbjct: 295  ELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATTP 354

Query: 1032 KDLISVVYLSANKIAPAHEGIELGIGDASIIKALAEAYGREVVHIKTQLETLGDLGLVAK 853
             DL++ VYLSAN+IAP HEGIELGIGDAS+I+ALAEAYGR+  H+K  L+ LGDLGLVAK
Sbjct: 355  DDLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLVAK 414

Query: 852  ASRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIR 673
            ASRSSQ++MFKP PLT+ +VL TFRAIAKESG +SQ+KK+NH+KGLLVAATDCEPQY+ R
Sbjct: 415  ASRSSQKMMFKPKPLTIARVLSTFRAIAKESGKDSQDKKRNHMKGLLVAATDCEPQYITR 474

Query: 672  LLQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKVVKQVYSVLPNYDLI 493
            LLQSK+RIGLAE+T+ +ALG AAVYS+K S+P  + QS  EEAAK++KQ YSVLP YD I
Sbjct: 475  LLQSKMRIGLAEKTVQMALGQAAVYSDKNSSP-PKVQSPFEEAAKIIKQAYSVLPIYDKI 533

Query: 492  IAALLDGGVCKLPETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQI 313
            + A+L+ GV KLPETC F++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQI
Sbjct: 534  VPAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQI 593

Query: 312  HYLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQ 133
            H +EDGSVEIYSRNAERNTGK+PDVV +V RF+  +V+SFVLDCE+VAYDREKQKILPFQ
Sbjct: 594  HCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKQKILPFQ 653

Query: 132  VLSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRE 1
            +LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLK+RRE
Sbjct: 654  ILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRRE 697


>ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium distachyon]
          Length = 918

 Score =  593 bits (1530), Expect = e-167
 Identities = 294/404 (72%), Positives = 347/404 (85%)
 Frame = -3

Query: 1212 QLKSKSLEFKPNISAYWKQGESVPFLFLAKAFDLIANESSRITITEILCNVFRTVIHPTP 1033
            +LK K  EF P  +AYWK  E VPFLFLA+A DLI+NES RI ITEIL NVFRT+I  TP
Sbjct: 280  ELKKKGSEFDPMAAAYWKPTEPVPFLFLAQALDLISNESGRIVITEILSNVFRTIIATTP 339

Query: 1032 KDLISVVYLSANKIAPAHEGIELGIGDASIIKALAEAYGREVVHIKTQLETLGDLGLVAK 853
            +DL++ VYLSAN+IAP HEGIELGIGDASII+ALAEAYGR+  H+K  L+ LGDLGLVAK
Sbjct: 340  EDLLATVYLSANRIAPPHEGIELGIGDASIIRALAEAYGRKEEHVKKNLKELGDLGLVAK 399

Query: 852  ASRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIR 673
            ASR SQ++M+KP PLT+ +VLDTFR IAKESG +SQ+KK++HIKGLLVAATDCEPQY+IR
Sbjct: 400  ASRLSQKMMYKPKPLTIARVLDTFRTIAKESGKDSQDKKRSHIKGLLVAATDCEPQYIIR 459

Query: 672  LLQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKVVKQVYSVLPNYDLI 493
            LLQSK+RIGLAE+T+ +ALG AAVYSE E +P ++ QS  EEAAK++KQ YSVLP YD I
Sbjct: 460  LLQSKMRIGLAEKTVQMALGQAAVYSE-EGSPPAKVQSPFEEAAKIIKQAYSVLPIYDRI 518

Query: 492  IAALLDGGVCKLPETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQI 313
            +  LL+ GV KLPETC+F++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQI
Sbjct: 519  VPTLLEAGVWKLPETCNFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQI 578

Query: 312  HYLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQ 133
            H +EDGSVEIYSRNAERNTGK+PDVV +V RF+  +V+SFVLDCE+VAYDREK+KILPFQ
Sbjct: 579  HCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPAVKSFVLDCEIVAYDREKKKILPFQ 638

Query: 132  VLSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRE 1
            +LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLKVRRE
Sbjct: 639  ILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKVRRE 682


>ref|XP_002272683.1| PREDICTED: DNA ligase 1 [Vitis vinifera] gi|297734904|emb|CBI17138.3|
            unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  592 bits (1525), Expect = e-167
 Identities = 305/411 (74%), Positives = 345/411 (83%), Gaps = 1/411 (0%)
 Frame = -3

Query: 1230 IETKISQLKSKSLEFKPNISAYWKQGESVPFLFLAKAFDLIANESSRITITEILCNVFRT 1051
            +E  I QL+ K+ +F P  +AYW+  + VPFLFL +AFD+I+ E+ RI IT+I+CN+ RT
Sbjct: 80   VEECIGQLRKKAADFNPKTAAYWED-KPVPFLFLVRAFDMISKETGRIVITDIVCNMLRT 138

Query: 1050 VIHPTPKDLISVVYLSANKIAPAHEGIELGIGDASIIKALAEAYGREVVHIKTQLETLGD 871
            V+H TP DL++VVYLSAN+IAPAHEG+ELGIGDASIIKALAEA GR+   IK+Q + LGD
Sbjct: 139  VMHATPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRKEEQIKSQYKALGD 198

Query: 870  LGLVAKASRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCE 691
            LGLVAKA RSSQ +M KP PLTV KV +TF  IAKESG +SQEKKKNHIK LLVAATDCE
Sbjct: 199  LGLVAKACRSSQSLMRKPDPLTVAKVFNTFGLIAKESGKDSQEKKKNHIKTLLVAATDCE 258

Query: 690  PQYLIRLLQSKLRIGLAEQTLLVALGHAAVYSEKE-SAPSSQTQSSLEEAAKVVKQVYSV 514
            PQYLIRLLQ+KLRIGLAEQTLL ALG AAVY++KE + P    QS LEEAA +VKQ YSV
Sbjct: 259  PQYLIRLLQTKLRIGLAEQTLLTALGQAAVYNDKELTQPPPHIQSPLEEAANIVKQSYSV 318

Query: 513  LPNYDLIIAALLDGGVCKLPETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKY 334
            LP YD I+ ALL GGV  LP+TCSF  GVP+GPMLAKPTKGVSEI+DKFQD EFTCEYKY
Sbjct: 319  LPVYDKIVPALLSGGVWNLPKTCSFMPGVPVGPMLAKPTKGVSEIIDKFQDMEFTCEYKY 378

Query: 333  DGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREK 154
            DGERAQIHY EDGSVEIYSRNAERNTGK+PDVV +V R K SSV SFVLDCE+VAYDR+K
Sbjct: 379  DGERAQIHYKEDGSVEIYSRNAERNTGKYPDVVVAVSRLKKSSVSSFVLDCELVAYDRQK 438

Query: 153  QKILPFQVLSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRE 1
             KILPFQVLSTRARK VVMS+I V VCIFAFDILY NGQ LLQEQLK+RRE
Sbjct: 439  GKILPFQVLSTRARKNVVMSEIKVDVCIFAFDILYRNGQPLLQEQLKIRRE 489


>tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays]
          Length = 909

 Score =  591 bits (1524), Expect = e-166
 Identities = 292/404 (72%), Positives = 344/404 (85%)
 Frame = -3

Query: 1212 QLKSKSLEFKPNISAYWKQGESVPFLFLAKAFDLIANESSRITITEILCNVFRTVIHPTP 1033
            +LK K  EF P   AYWK GE VPFLFLA+A DLI+NES RI ITEIL NVFRTV+  TP
Sbjct: 273  ELKKKGSEFDPMAVAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATTP 332

Query: 1032 KDLISVVYLSANKIAPAHEGIELGIGDASIIKALAEAYGREVVHIKTQLETLGDLGLVAK 853
             DL++ VYLSAN+IAP HEGIELGIGDAS+I+ALAEAYGR+  H+K  L+ LGDLGLVAK
Sbjct: 333  DDLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLVAK 392

Query: 852  ASRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIR 673
            ASRSSQ++MFKP PLT+ +VL TFR IAKESG +SQ+KK+NH+KGLLVAATDCEPQY+ R
Sbjct: 393  ASRSSQKMMFKPKPLTIARVLSTFRTIAKESGKDSQDKKRNHMKGLLVAATDCEPQYITR 452

Query: 672  LLQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKVVKQVYSVLPNYDLI 493
            LLQSK+RIGLAE+T+ +ALG AAVY++K   P  + QS  EEAAK++KQ YSVLP YD I
Sbjct: 453  LLQSKMRIGLAEKTVQMALGQAAVYADKNPLP-PKVQSPFEEAAKIIKQAYSVLPIYDKI 511

Query: 492  IAALLDGGVCKLPETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQI 313
            + A+L+ GV KLPETC F++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQI
Sbjct: 512  VPAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQI 571

Query: 312  HYLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQ 133
            H +EDGSVEIYSRNAERNTGK+PDVV +V RF+ ++V+SFVLDCE+VAYDREKQKILPFQ
Sbjct: 572  HCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKATVKSFVLDCEIVAYDREKQKILPFQ 631

Query: 132  VLSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRE 1
            +LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLK+RRE
Sbjct: 632  ILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRRE 675


>ref|XP_004145818.1| PREDICTED: DNA ligase 1-like [Cucumis sativus]
          Length = 801

 Score =  587 bits (1514), Expect = e-165
 Identities = 296/410 (72%), Positives = 341/410 (83%)
 Frame = -3

Query: 1230 IETKISQLKSKSLEFKPNISAYWKQGESVPFLFLAKAFDLIANESSRITITEILCNVFRT 1051
            +++  ++LK K+ +F     A WK+GE VPFLFL   FD+I+ ESSRITIT+I+CN+ RT
Sbjct: 158  LKSSTAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRT 217

Query: 1050 VIHPTPKDLISVVYLSANKIAPAHEGIELGIGDASIIKALAEAYGREVVHIKTQLETLGD 871
            V+  TP DL++ VYL ANKIAPAHEG+ELGIGDASIIKAL+EA+GR    +K Q + LGD
Sbjct: 218  VMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGD 277

Query: 870  LGLVAKASRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCE 691
            LGLVAKASRSSQ +M KP  LTV KV DTFR IAKESG +SQEKKKNHIK LLVAATDCE
Sbjct: 278  LGLVAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCE 337

Query: 690  PQYLIRLLQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKVVKQVYSVL 511
            P YLIRLLQ+KLRIGLAEQTLL ALG AAVYSEK S P    QS LEEA+K+VKQVYS+L
Sbjct: 338  PLYLIRLLQTKLRIGLAEQTLLAALGQAAVYSEKHSTPPPNIQSPLEEASKIVKQVYSIL 397

Query: 510  PNYDLIIAALLDGGVCKLPETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYD 331
            P YD ++ ALL GGV  L +TC+FT G+PIGPMLAKPTKGVSEIL+KFQ  EFTCEYKYD
Sbjct: 398  PVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYD 457

Query: 330  GERAQIHYLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQ 151
            GERAQIHY+EDGSVEIYSRNAERNTGKFPDVV +V R K  SVRSF+LDCE+VAYDR KQ
Sbjct: 458  GERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQ 517

Query: 150  KILPFQVLSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRE 1
            KILPFQ+LSTRARK V +SDI V+VC+FAFD+LYL+GQ L+Q +L VRRE
Sbjct: 518  KILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRE 567