BLASTX nr result
ID: Coptis21_contig00005918
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00005918
(1865 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo] 730 0.0
ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-lik... 728 0.0
ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-pro... 728 0.0
ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-lik... 728 0.0
ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|2... 723 0.0
>gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]
Length = 581
Score = 730 bits (1885), Expect = 0.0
Identities = 353/496 (71%), Positives = 390/496 (78%), Gaps = 13/496 (2%)
Frame = +3
Query: 3 AKDGIAQGMRNHKLGFVENAAIEPFLFDQQYHA------AADPSGMWGDNMVGDMEKMKE 164
AKDGIAQGMRNHKLGFVENA+IEPF+FD+QY+ AADPS G+N +GDME +++
Sbjct: 89 AKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQK 148
Query: 165 NDGIS------HSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPASEDWLKKNRKSPWSGK 326
ND IS H NPAS+ WL KNRKSPWSGK
Sbjct: 149 NDAISVYNIPQHEQKKRKIEKKKEMSENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGK 208
Query: 327 K-GVVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKSMFHGKEEKDYQGRSWIXX 503
K G+ ELT DKS FHGKEE+DYQGRSWI
Sbjct: 209 KEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVT---ADKSTFHGKEERDYQGRSWIAP 265
Query: 504 XXXXXXXXXXCYIPKRKIHTWSGHTKGVSAIRFFPKYGHLLLSAGMDSKVKIWDVFNSGN 683
CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KVKIWDVFNSG
Sbjct: 266 PKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGK 325
Query: 684 CMRTYMGHGKAVKDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKVPYVVKLNP 863
CMRTYMGH +AV+DISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGK+PYVVKLNP
Sbjct: 326 CMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNP 385
Query: 864 NDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLR 1043
+DDKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLR
Sbjct: 386 DDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 445
Query: 1044 VWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYNTRDRFQLNKKKRFA 1223
VWEFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIY+TR+RFQLNKKKRFA
Sbjct: 446 VWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 505
Query: 1224 SHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQ 1403
HIVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQ
Sbjct: 506 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQ 565
Query: 1404 SKVATCGWDGMIHYWD 1451
SKVATCGWDG+I YWD
Sbjct: 566 SKVATCGWDGLIKYWD 581
>ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-like [Vitis vinifera]
Length = 583
Score = 728 bits (1880), Expect = 0.0
Identities = 352/493 (71%), Positives = 389/493 (78%), Gaps = 11/493 (2%)
Frame = +3
Query: 3 AKDGIAQGMRNHKLGFVENAAIEPFLFDQQYHA------AADPSGMWGDNMVGDMEKMKE 164
AKDGIAQGMRNHKLGFVENAAIEPF+FD+QY+ AADPS G+N VGD+E +++
Sbjct: 93 AKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAGNNYVGDLEALEK 152
Query: 165 NDGIS----HSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPASEDWLKKNRKSPWSGKK- 329
NDGIS NPA++ WL KN+KSPW+GKK
Sbjct: 153 NDGISVYNIPQHEQKKRKIEKKKESESEENEDVDVEEVQNPATDTWLLKNKKSPWAGKKE 212
Query: 330 GVVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKSMFHGKEEKDYQGRSWIXXXX 509
G+ ELT DKS FHGKEE+DYQGRSWI
Sbjct: 213 GLQTELTEEQKKYAEEYAKKKGEEKGAAEKGEFV--TDKSTFHGKEERDYQGRSWIAPPK 270
Query: 510 XXXXXXXXCYIPKRKIHTWSGHTKGVSAIRFFPKYGHLLLSAGMDSKVKIWDVFNSGNCM 689
CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KVKIWDVFNSG CM
Sbjct: 271 DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 330
Query: 690 RTYMGHGKAVKDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKVPYVVKLNPND 869
RTYMGH KAV+DISF NDGTKFL+AGYDKNIKYWDTETGQVIS+FSTGK+PYVVKLNP+D
Sbjct: 331 RTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDD 390
Query: 870 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1049
DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 391 DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 450
Query: 1050 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYNTRDRFQLNKKKRFASH 1229
EFGIPVVIKYISEPHMHSMP+ISLHPN+NWLAAQSLDNQILIY+TR+RFQLNKKKRFA H
Sbjct: 451 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 510
Query: 1230 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1409
I AGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 511 IAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 570
Query: 1410 VATCGWDGMIHYW 1448
VATCGWDG+I YW
Sbjct: 571 VATCGWDGLIKYW 583
>ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
[Cucumis sativus]
Length = 580
Score = 728 bits (1878), Expect = 0.0
Identities = 353/495 (71%), Positives = 390/495 (78%), Gaps = 13/495 (2%)
Frame = +3
Query: 3 AKDGIAQGMRNHKLGFVENAAIEPFLFDQQYHA------AADPSGMWGDNMVGDMEKMKE 164
AKDGIAQGMRNHKLGFVENA+IEPF+FD+QY+ AADPS G+N +GDME +++
Sbjct: 89 AKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEK 148
Query: 165 NDGIS------HSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPASEDWLKKNRKSPWSGK 326
ND IS H NPAS+ WL KNRKSPWSGK
Sbjct: 149 NDAISVYNIPQHEQKKRKIEKKKKXSENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGK 208
Query: 327 K-GVVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKSMFHGKEEKDYQGRSWIXX 503
K G+ ELT DKS FHGKEE+DYQGRSWI
Sbjct: 209 KEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTS---DKSTFHGKEERDYQGRSWIAP 265
Query: 504 XXXXXXXXXXCYIPKRKIHTWSGHTKGVSAIRFFPKYGHLLLSAGMDSKVKIWDVFNSGN 683
CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KVKIWDVFNSG
Sbjct: 266 PKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGK 325
Query: 684 CMRTYMGHGKAVKDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKVPYVVKLNP 863
CMRTYMGH +AV+DISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGK+PYVVKLNP
Sbjct: 326 CMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNP 385
Query: 864 NDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLR 1043
+DDKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLR
Sbjct: 386 DDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 445
Query: 1044 VWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYNTRDRFQLNKKKRFA 1223
VWEFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIY+TR+RFQLNKKKRFA
Sbjct: 446 VWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 505
Query: 1224 SHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQ 1403
HIVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQ
Sbjct: 506 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQ 565
Query: 1404 SKVATCGWDGMIHYW 1448
SKVATCGWDG+I YW
Sbjct: 566 SKVATCGWDGLIKYW 580
>ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-like [Cucumis sativus]
Length = 580
Score = 728 bits (1878), Expect = 0.0
Identities = 352/495 (71%), Positives = 389/495 (78%), Gaps = 13/495 (2%)
Frame = +3
Query: 3 AKDGIAQGMRNHKLGFVENAAIEPFLFDQQYHA------AADPSGMWGDNMVGDMEKMKE 164
AKDGIAQGMRNHKLGFVENA+IEPF+FD+QY+ AADPS G+N +GDME +++
Sbjct: 89 AKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEK 148
Query: 165 NDGIS------HSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPASEDWLKKNRKSPWSGK 326
ND IS H NPAS+ WL KNRKSPWSGK
Sbjct: 149 NDAISVYNIPQHEQKKRKIEKKKEMSENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGK 208
Query: 327 K-GVVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKSMFHGKEEKDYQGRSWIXX 503
K G+ ELT DKS FHGKEE+DYQGRSWI
Sbjct: 209 KEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTS---DKSTFHGKEERDYQGRSWIAP 265
Query: 504 XXXXXXXXXXCYIPKRKIHTWSGHTKGVSAIRFFPKYGHLLLSAGMDSKVKIWDVFNSGN 683
CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KVKIWDVFNSG
Sbjct: 266 PKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGK 325
Query: 684 CMRTYMGHGKAVKDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKVPYVVKLNP 863
CMRTYMGH +AV+DISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGK+PYVVKLNP
Sbjct: 326 CMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNP 385
Query: 864 NDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLR 1043
+DDKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLR
Sbjct: 386 DDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 445
Query: 1044 VWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYNTRDRFQLNKKKRFA 1223
VWEFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIY+TR+RFQLNKKKRFA
Sbjct: 446 VWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 505
Query: 1224 SHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQ 1403
HIVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQ
Sbjct: 506 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQ 565
Query: 1404 SKVATCGWDGMIHYW 1448
SKVATCGWDG+I YW
Sbjct: 566 SKVATCGWDGLIKYW 580
>ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|222852429|gb|EEE89976.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 723 bits (1865), Expect = 0.0
Identities = 350/497 (70%), Positives = 388/497 (78%), Gaps = 14/497 (2%)
Frame = +3
Query: 3 AKDGIAQGMRNHKLGFVENAAIEPFLFDQQYHA------AADPSGMWGDNMVGDMEKMKE 164
AKDGIAQGMRNHKLGFVENAAI+ F+FD+QY+ AADPS G+N VGD++ +++
Sbjct: 88 AKDGIAQGMRNHKLGFVENAAIDSFVFDEQYNTFHKYGYAADPSASAGNNYVGDLDTLEK 147
Query: 165 NDGIS-------HSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPASEDWLKKNRKSPWSG 323
+GIS NPA++ WL KNRKSPW+G
Sbjct: 148 TNGISVYNIPQHEQKKRKIEKKREVTEEEGDGDDVMDKEEVENPATDAWLMKNRKSPWAG 207
Query: 324 KK-GVVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKSMFHGKEEKDYQGRSWIX 500
KK G+ EL+ DK+ FHGKEE+DYQGRSW+
Sbjct: 208 KKEGLQTELSEEQQKYAEEHARKKAEKAGGEKGEVV---ADKTTFHGKEERDYQGRSWLA 264
Query: 501 XXXXXXXXXXXCYIPKRKIHTWSGHTKGVSAIRFFPKYGHLLLSAGMDSKVKIWDVFNSG 680
CYIPKR +HTWSGHTKGVSAIRFFPKYGHL+LSAGMD+KVKIWDVFNSG
Sbjct: 265 PPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG 324
Query: 681 NCMRTYMGHGKAVKDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKVPYVVKLN 860
CMRTYMGH KAV+DISF NDGTKFL+A YDKNIKYWDTETGQVIS+FSTGK+PYVVKLN
Sbjct: 325 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVISTFSTGKIPYVVKLN 384
Query: 861 PNDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSL 1040
P+DDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSL
Sbjct: 385 PDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSL 444
Query: 1041 RVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYNTRDRFQLNKKKRF 1220
RVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIY+TR+RFQLNKKKRF
Sbjct: 445 RVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRERFQLNKKKRF 504
Query: 1221 ASHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLE 1400
A HIVAGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVCIGCEWHPLE
Sbjct: 505 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 564
Query: 1401 QSKVATCGWDGMIHYWD 1451
QSKVATCGWDG+I YWD
Sbjct: 565 QSKVATCGWDGLIKYWD 581