BLASTX nr result
ID: Coptis21_contig00005892
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00005892
(586 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein lig... 287 8e-76
emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] 287 8e-76
ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|2... 285 3e-75
ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|2... 283 2e-74
ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinu... 279 2e-73
>ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis
vinifera] gi|302143037|emb|CBI20332.3| unnamed protein
product [Vitis vinifera]
Length = 492
Score = 287 bits (735), Expect = 8e-76
Identities = 143/195 (73%), Positives = 152/195 (77%)
Frame = +1
Query: 1 RVLRFLQGVEQASSLVTSSGNEMQITTGRYHTLLISDSSVYSCGSSLCGVLGHGSETKQC 180
RVLRFLQ VEQ+S + +S MQITTGRYHTLLI DSSVYSCGSSLCGVLGHG ET QC
Sbjct: 92 RVLRFLQSVEQSSYISETSAGNMQITTGRYHTLLIKDSSVYSCGSSLCGVLGHGPETTQC 151
Query: 181 VSFSRINFPFXXXXXXXXXXXXXXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVE 360
V+FSRINFP FVMQSGEVFTCGDNSS+CCGHG+ IFRPR VE
Sbjct: 152 VAFSRINFPPLAHVAQVSASHNHAAFVMQSGEVFTCGDNSSFCCGHGDTVRPIFRPRLVE 211
Query: 361 ALKGVSCKQVATGLSFTAFLTRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCV 540
ALKGV CKQVA GLSFT FLT +GHVYTCG+N HGQLGHGD VDR TPKIVE LEGVG V
Sbjct: 212 ALKGVPCKQVAAGLSFTVFLTMKGHVYTCGTNTHGQLGHGDTVDRRTPKIVELLEGVGPV 271
Query: 541 VQTAAGPSYTLAVMD 585
VQ AAGPSY +AV D
Sbjct: 272 VQIAAGPSYAMAVTD 286
Score = 71.6 bits (174), Expect = 9e-11
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 3/175 (1%)
Frame = +1
Query: 70 QITTGRYHTLLIS-DSSVYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXXX 246
Q+ G T+ ++ VY+CG++ G LGHG +
Sbjct: 220 QVAAGLSFTVFLTMKGHVYTCGTNTHGQLGHGDTVDRRTPKIVELLEGVGPVVQIAAGPS 279
Query: 247 XXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVEAL--KGVSCKQVATGLSFTAFL 420
V G V + G S++C GHGE H RPR +++ K + +++ G L
Sbjct: 280 YAMAVTDDGTVHSFGSGSNFCLGHGEQ-HNELRPRAIQSFRRKTIHVVRISAGDEHVVAL 338
Query: 421 TRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCVVQTAAGPSYTLAVMD 585
G VYT G G LGHGD +D+ TP+I+ +L+ VQ A T ++D
Sbjct: 339 DSSGFVYTWGKGYCGALGHGDEIDKTTPEILSSLKS-HLAVQVCARKRKTFVLVD 392
>emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera]
Length = 511
Score = 287 bits (735), Expect = 8e-76
Identities = 143/195 (73%), Positives = 152/195 (77%)
Frame = +1
Query: 1 RVLRFLQGVEQASSLVTSSGNEMQITTGRYHTLLISDSSVYSCGSSLCGVLGHGSETKQC 180
RVLRFLQ VEQ+S + +S MQITTGRYHTLLI DSSVYSCGSSLCGVLGHG ET QC
Sbjct: 92 RVLRFLQSVEQSSYISETSAGNMQITTGRYHTLLIKDSSVYSCGSSLCGVLGHGPETTQC 151
Query: 181 VSFSRINFPFXXXXXXXXXXXXXXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVE 360
V+FSRINFP FVMQSGEVFTCGDNSS+CCGHG+ IFRPR VE
Sbjct: 152 VAFSRINFPPLAHVAQVSASHNHAAFVMQSGEVFTCGDNSSFCCGHGDTVRPIFRPRLVE 211
Query: 361 ALKGVSCKQVATGLSFTAFLTRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCV 540
ALKGV CKQVA GLSFT FLT +GHVYTCG+N HGQLGHGD VDR TPKIVE LEGVG V
Sbjct: 212 ALKGVPCKQVAAGLSFTVFLTMKGHVYTCGTNTHGQLGHGDTVDRRTPKIVELLEGVGPV 271
Query: 541 VQTAAGPSYTLAVMD 585
VQ AAGPSY +AV D
Sbjct: 272 VQIAAGPSYAMAVTD 286
Score = 71.6 bits (174), Expect = 9e-11
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 3/175 (1%)
Frame = +1
Query: 70 QITTGRYHTLLIS-DSSVYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXXX 246
Q+ G T+ ++ VY+CG++ G LGHG +
Sbjct: 220 QVAAGLSFTVFLTMKGHVYTCGTNTHGQLGHGDTVDRRTPKIVELLEGVGPVVQIAAGPS 279
Query: 247 XXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVEAL--KGVSCKQVATGLSFTAFL 420
V G V + G S++C GHGE H RPR +++ K + +++ G L
Sbjct: 280 YAMAVTDDGTVHSFGSGSNFCLGHGEQ-HNELRPRAIQSFRRKTIHVVRISAGDEHVVAL 338
Query: 421 TRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCVVQTAAGPSYTLAVMD 585
G VYT G G LGHGD +D+ TP+I+ +L+ VQ A T ++D
Sbjct: 339 DSSGFVYTWGKGYCGALGHGDEIDKTTPEILSSLKS-HLAVQVCARKRKTFVLVD 392
>ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1|
predicted protein [Populus trichocarpa]
Length = 478
Score = 285 bits (730), Expect = 3e-75
Identities = 137/195 (70%), Positives = 153/195 (78%)
Frame = +1
Query: 1 RVLRFLQGVEQASSLVTSSGNEMQITTGRYHTLLISDSSVYSCGSSLCGVLGHGSETKQC 180
RVLRFLQ VE++S +V +S + MQ+TTGRYHTLLI DSSVYSCGSSLCGVLGHG+ET QC
Sbjct: 92 RVLRFLQAVEESSGMVKTSASNMQVTTGRYHTLLIRDSSVYSCGSSLCGVLGHGAETTQC 151
Query: 181 VSFSRINFPFXXXXXXXXXXXXXXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVE 360
V+F+RI FP FV+QSGEVFTCGDNSS+CCGH + IFRPR VE
Sbjct: 152 VAFTRIRFPSLAYVIQVSASHNHAAFVLQSGEVFTCGDNSSFCCGHNDTNRPIFRPRLVE 211
Query: 361 ALKGVSCKQVATGLSFTAFLTRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCV 540
ALKGV CKQVA GL+FT FLTRQG +YTCG+N HGQLGHGD DRPTPKI+E LEGVG V
Sbjct: 212 ALKGVPCKQVAVGLNFTVFLTRQGQLYTCGTNTHGQLGHGDTQDRPTPKIIELLEGVGSV 271
Query: 541 VQTAAGPSYTLAVMD 585
VQ AAGPSY LAV D
Sbjct: 272 VQIAAGPSYVLAVTD 286
Score = 68.6 bits (166), Expect = 8e-10
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 3/175 (1%)
Frame = +1
Query: 70 QITTGRYHTLLIS-DSSVYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXXX 246
Q+ G T+ ++ +Y+CG++ G LGHG +
Sbjct: 220 QVAVGLNFTVFLTRQGQLYTCGTNTHGQLGHGDTQDRPTPKIIELLEGVGSVVQIAAGPS 279
Query: 247 XXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVEAL--KGVSCKQVATGLSFTAFL 420
V +G V++ G S+ C GHGE H FRPR ++ K + V+ G L
Sbjct: 280 YVLAVTDNGVVYSFGSGSNLCLGHGEQ-HDEFRPRAIQTFRRKDIHVVHVSAGDEHAVAL 338
Query: 421 TRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCVVQTAAGPSYTLAVMD 585
G VY+ G G LGHGD +D+ P +V L+ VQ A T ++D
Sbjct: 339 DSSGFVYSWGKGYCGALGHGDEIDKTLPALVNCLKS-HLAVQVCARKRKTFVLVD 392
Score = 57.4 bits (137), Expect = 2e-06
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Frame = +1
Query: 67 MQITTGRYHTLLISDSS-VYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXX 243
+ ++ G H + + S VYS G CG LGHG E + + + +N
Sbjct: 326 VHVSAGDEHAVALDSSGFVYSWGKGYCGALGHGDEIDKTLP-ALVNCLKSHLAVQVCARK 384
Query: 244 XXXXFVMQSGEVFTCGDNSSYCCGHGEGGHA--IFRPRRVEALKGVSCKQVATGLSFTAF 417
++ G V+ G G + G + + RPR +++L+ Q++TGL T
Sbjct: 385 RKTFVLVDGGSVYGFGWMGFGSLGFPDRGLSDKVMRPRVLDSLRARHVSQISTGLYHTVV 444
Query: 418 LTRQGHVYTCGSNAHGQLGH 477
+T QG ++ G N QLGH
Sbjct: 445 VTNQGQMFGFGDNERAQLGH 464
>ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1|
predicted protein [Populus trichocarpa]
Length = 492
Score = 283 bits (723), Expect = 2e-74
Identities = 136/195 (69%), Positives = 153/195 (78%)
Frame = +1
Query: 1 RVLRFLQGVEQASSLVTSSGNEMQITTGRYHTLLISDSSVYSCGSSLCGVLGHGSETKQC 180
RVLRFLQ VE++S +V +S MQ+TTGRYHTLLI DSSVYSCGSSLCGVLGHG+ET QC
Sbjct: 92 RVLRFLQAVEESSGMVKTSACNMQVTTGRYHTLLIRDSSVYSCGSSLCGVLGHGAETTQC 151
Query: 181 VSFSRINFPFXXXXXXXXXXXXXXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVE 360
V+F+RI FP FV+QSGEVFTCGDNSS+CCGH + IFRPR VE
Sbjct: 152 VAFTRIRFPSLANVVQVSASHNHAAFVLQSGEVFTCGDNSSFCCGHKDTNRPIFRPRLVE 211
Query: 361 ALKGVSCKQVATGLSFTAFLTRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCV 540
ALK VSCKQV+ GL+FT FLTRQG +YTCGSN HGQLGHGD +DRPTPKI+E LEG+G V
Sbjct: 212 ALKAVSCKQVSVGLNFTVFLTRQGQLYTCGSNTHGQLGHGDTLDRPTPKIIELLEGIGPV 271
Query: 541 VQTAAGPSYTLAVMD 585
VQ AAGPSY LAV D
Sbjct: 272 VQIAAGPSYVLAVTD 286
Score = 69.3 bits (168), Expect = 4e-10
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 3/175 (1%)
Frame = +1
Query: 70 QITTGRYHTLLIS-DSSVYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXXX 246
Q++ G T+ ++ +Y+CGS+ G LGHG +
Sbjct: 220 QVSVGLNFTVFLTRQGQLYTCGSNTHGQLGHGDTLDRPTPKIIELLEGIGPVVQIAAGPS 279
Query: 247 XXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVEAL--KGVSCKQVATGLSFTAFL 420
V +G V++ G S++C GHGE H F+PR ++ K + V+ G L
Sbjct: 280 YVLAVTDNGVVYSFGYGSNFCLGHGEQ-HDEFQPRAIQTFRRKDIHVVHVSAGDEHAVAL 338
Query: 421 TRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCVVQTAAGPSYTLAVMD 585
G VY+ G G LGHGD +D+ P +V L+ VQ A T ++D
Sbjct: 339 DSSGFVYSWGKGYCGALGHGDEIDKTLPSLVNCLKS-RLAVQACARKRKTFVLVD 392
Score = 57.0 bits (136), Expect = 2e-06
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Frame = +1
Query: 67 MQITTGRYHTLLISDSS-VYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXX 243
+ ++ G H + + S VYS G CG LGHG E + + S +N
Sbjct: 326 VHVSAGDEHAVALDSSGFVYSWGKGYCGALGHGDEIDKTLP-SLVNCLKSRLAVQACARK 384
Query: 244 XXXXFVMQSGEVFTCGDNSSYCCGHGEGG-------HAIFRPRRVEALKGVSCKQVATGL 402
++ G V+ G C G G G + PR +++L+ Q++TGL
Sbjct: 385 RKTFVLVDDGSVYGFG-----CMGFGSLGFPDRDITEKVMTPRVLDSLRAHRVSQISTGL 439
Query: 403 SFTAFLTRQGHVYTCGSNAHGQLGH 477
T +T QG ++ G N QLGH
Sbjct: 440 YHTVVVTNQGQMFGFGDNERVQLGH 464
>ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223532017|gb|EEF33828.1| Ran GTPase binding protein,
putative [Ricinus communis]
Length = 497
Score = 279 bits (714), Expect = 2e-73
Identities = 133/195 (68%), Positives = 151/195 (77%)
Frame = +1
Query: 1 RVLRFLQGVEQASSLVTSSGNEMQITTGRYHTLLISDSSVYSCGSSLCGVLGHGSETKQC 180
RVLRFL VE++S +V +S MQITTGRYHTLLIS+SSVYSCGSSLCGVLGHG ET QC
Sbjct: 92 RVLRFLLAVEESSGMVETSAGNMQITTGRYHTLLISNSSVYSCGSSLCGVLGHGPETTQC 151
Query: 181 VSFSRINFPFXXXXXXXXXXXXXXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVE 360
VSFSRI FP ++++SGEVFTCGDNSS+CCGH + IFRPR VE
Sbjct: 152 VSFSRITFPSLARVVQVSASHNHAAYILESGEVFTCGDNSSFCCGHQDTSRPIFRPRFVE 211
Query: 361 ALKGVSCKQVATGLSFTAFLTRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCV 540
ALKGV CKQVA GL+FT FLTR GHVY+CG+N HGQLGHGD +DRPTPKI+E+ EG+G V
Sbjct: 212 ALKGVPCKQVAAGLNFTVFLTRTGHVYSCGTNTHGQLGHGDTLDRPTPKIIESFEGIGSV 271
Query: 541 VQTAAGPSYTLAVMD 585
Q AAGPSY LAV D
Sbjct: 272 AQIAAGPSYVLAVTD 286
Score = 74.7 bits (182), Expect = 1e-11
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = +1
Query: 70 QITTGRYHTLLISDSS-VYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXXX 246
Q+ G T+ ++ + VYSCG++ G LGHG + +F
Sbjct: 220 QVAAGLNFTVFLTRTGHVYSCGTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPS 279
Query: 247 XXXFVMQSGEVFTCGDNSSYCCGHGEGGHAIFRPRRVEAL--KGVSCKQVATGLSFTAFL 420
V SG V++ G S++C GHGE H F PR ++ K + +V+ G L
Sbjct: 280 YVLAVTDSGVVYSFGSGSNFCLGHGEQ-HNEFHPRAIQTFRRKNLHVVRVSAGDEHVVAL 338
Query: 421 TRQGHVYTCGSNAHGQLGHGDNVDRPTPKIVEALEGVGCVVQTAAGPSYTLAVMD 585
G VYT G G LGHGD +D+ P+ + +L+ VQ A T ++D
Sbjct: 339 DSSGFVYTWGKGYCGALGHGDEIDKTLPEPLNSLKS-HLAVQVCARKRKTFVLVD 392
Score = 55.8 bits (133), Expect = 5e-06
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Frame = +1
Query: 67 MQITTGRYHTLLISDSS-VYSCGSSLCGVLGHGSETKQCVSFSRINFPFXXXXXXXXXXX 243
++++ G H + + S VY+ G CG LGHG E + + +N
Sbjct: 326 VRVSAGDEHVVALDSSGFVYTWGKGYCGALGHGDEIDKTLP-EPLNSLKSHLAVQVCARK 384
Query: 244 XXXXFVMQSGEVFTCGDNSSYCCGHGEGGHA--IFRPRRVEALKGVSCKQVATGLSFTAF 417
++ G VF G G + G + + RPR +++L+ Q++TGL T
Sbjct: 385 RKTFVLVDGGCVFGFGWMGFGSLGFPDRGVSDKVMRPRILDSLRAHRVSQISTGLYHTVA 444
Query: 418 LTRQGHVYTCGSNAHGQLGH 477
+T QG V+ G N QLGH
Sbjct: 445 VTSQGQVFGFGDNERAQLGH 464