BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005746
         (1364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-100
ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-100
ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containi...   338   1e-90
ref|XP_002517255.1| conserved hypothetical protein [Ricinus comm...   338   2e-90
ref|XP_002314145.1| predicted protein [Populus trichocarpa] gi|2...   338   3e-90

>ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
            isoform 1 [Vitis vinifera]
            gi|359478900|ref|XP_003632183.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g46870
            isoform 2 [Vitis vinifera] gi|297745987|emb|CBI16043.3|
            unnamed protein product [Vitis vinifera]
          Length = 252

 Score =  369 bits (948), Expect = e-100
 Identities = 182/253 (71%), Positives = 212/253 (83%)
 Frame = -3

Query: 1353 MAIRAIWKSKFPIISTTILQNLVIPFQKPSSLTKLQNPNVEISSKGHFLNMRNYHDGRPR 1174
            MAIRA  +SK PI S  ILQNL+    K S  T+ Q P +E+ S    L  + YHDGRPR
Sbjct: 1    MAIRAFSRSKIPIFSAKILQNLIKAPIKES--TRFQFPVLEVGSYKPLLGSKLYHDGRPR 58

Query: 1173 GPLWKGKKMIGKEALFVISGLKRFKEDEDKLNKFIKSHVLRLLKMDLIAVLTELERQEEV 994
            GPLW+GKK+IGKEALFVI GLKRFK+DE+ L KFIKSHVLRLLKMD++AVLTELERQEEV
Sbjct: 59   GPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEEV 118

Query: 993  SLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPDCQTYSE 814
            SLA+++F +I+KQDWYKPDVYLYKDLI++L+K KKM++AM++WE+M+ EDLFPD QTY+E
Sbjct: 119  SLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYTE 178

Query: 813  VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXLRNRVKEDFEEIFPD 634
            VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRI          LRNRVK+DFEEIFPD
Sbjct: 179  VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPD 238

Query: 633  RHIYDPPEEIFGM 595
            RH+YDPPEEIFG+
Sbjct: 239  RHVYDPPEEIFGV 251


>ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
            [Vitis vinifera] gi|297745785|emb|CBI15841.3| unnamed
            protein product [Vitis vinifera]
          Length = 252

 Score =  369 bits (948), Expect = e-100
 Identities = 181/253 (71%), Positives = 213/253 (84%)
 Frame = -3

Query: 1353 MAIRAIWKSKFPIISTTILQNLVIPFQKPSSLTKLQNPNVEISSKGHFLNMRNYHDGRPR 1174
            MAIRA  +SK PI S  ILQ+L+    K S  TK Q P +E++S      +++YHDGRPR
Sbjct: 1    MAIRAFSRSKIPIFSAKILQSLIKSPIKES--TKFQFPVLEVASNKPLFGLKHYHDGRPR 58

Query: 1173 GPLWKGKKMIGKEALFVISGLKRFKEDEDKLNKFIKSHVLRLLKMDLIAVLTELERQEEV 994
            GPLW+GKK+IGKEALFVI GLKRFK+DE+KL KFIKSHVLRLLKMD+IAVLTELERQEEV
Sbjct: 59   GPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEEV 118

Query: 993  SLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPDCQTYSE 814
            +LA+++F + QKQDWYKPDVYLYKDLI++L+K KKM+ AM++WE+M+ EDLFPD QTY+E
Sbjct: 119  TLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYTE 178

Query: 813  VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXLRNRVKEDFEEIFPD 634
            VIRGFLR+GSPADAMNIYEDMKKSPDPPEELPFRI          LRNRVK+DFEEIFPD
Sbjct: 179  VIRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPD 238

Query: 633  RHIYDPPEEIFGM 595
            RH+YDPPEEIFG+
Sbjct: 239  RHVYDPPEEIFGI 251


>ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like
            [Cucumis sativus] gi|449475090|ref|XP_004154371.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At3g46870-like [Cucumis sativus]
            gi|449508514|ref|XP_004163333.1| PREDICTED:
            pentatricopeptide repeat-containing protein
            At3g46870-like [Cucumis sativus]
          Length = 255

 Score =  338 bits (868), Expect = 1e-90
 Identities = 164/260 (63%), Positives = 204/260 (78%), Gaps = 6/260 (2%)
 Frame = -3

Query: 1353 MAIRAIWKSKFPIISTTILQNLV------IPFQKPSSLTKLQNPNVEISSKGHFLNMRNY 1192
            MAIR   +SK P+ ++  LQ L       +P    S++T  Q       S+      R Y
Sbjct: 1    MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQP-----DSRRPIWGFRLY 55

Query: 1191 HDGRPRGPLWKGKKMIGKEALFVISGLKRFKEDEDKLNKFIKSHVLRLLKMDLIAVLTEL 1012
            HDGRPRGPLW+ +K IGKEALFVI GLKRFKEDE+K  KF+KSHV RLLK+D++AVL EL
Sbjct: 56   HDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGEL 115

Query: 1011 ERQEEVSLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPD 832
            ERQEEV+LA+KIF +I+KQDWYKPDVY+YKDLI++L++SKKM++AMK+WE+M+ E+LFPD
Sbjct: 116  ERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPD 175

Query: 831  CQTYSEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXLRNRVKEDF 652
             QTY+EVIRGFLRYGSP+DAMN+YEDMKKSPDPP+ELPFRI          LRNRVK+DF
Sbjct: 176  SQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDF 235

Query: 651  EEIFPDRHIYDPPEEIFGMR 592
            EE+FPD+H++DPPEEIF +R
Sbjct: 236  EELFPDQHVFDPPEEIFSLR 255


>ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
            gi|223543626|gb|EEF45155.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 258

 Score =  338 bits (867), Expect = 2e-90
 Identities = 169/258 (65%), Positives = 204/258 (79%), Gaps = 11/258 (4%)
 Frame = -3

Query: 1332 KSKFPIISTTILQNLVIPFQKPSSLTKLQNPNVEI-----------SSKGHFLNMRNYHD 1186
            +S+   +S  +LQNL     KP   T+L  PN +             S   F  +R YHD
Sbjct: 5    RSRIAKLSVVLLQNLT---NKPIKQTQLP-PNSQALFDLNILNKHNHSHNSFSGLRQYHD 60

Query: 1185 GRPRGPLWKGKKMIGKEALFVISGLKRFKEDEDKLNKFIKSHVLRLLKMDLIAVLTELER 1006
            GRPRGPLW+GKK+IGKEALFVI GLKRFK++E+KL+KFIK+HVLRLLKMD+IAVLTELER
Sbjct: 61   GRPRGPLWRGKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELER 120

Query: 1005 QEEVSLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPDCQ 826
            QEEVSLA K+F IIQKQDWY PDVYLYKDLI++L++S KM++AMK+WEAM++E+LFPD Q
Sbjct: 121  QEEVSLATKVFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSENLFPDSQ 180

Query: 825  TYSEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXLRNRVKEDFEE 646
             Y+E+IRGFLR GSP DAMNIYEDMKKSPDPPEELPFRI          LRNRVK+D+EE
Sbjct: 181  MYTELIRGFLRDGSPGDAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDYEE 240

Query: 645  IFPDRHIYDPPEEIFGMR 592
            +FP++H+YDPPEEIFG+R
Sbjct: 241  LFPEKHVYDPPEEIFGVR 258


>ref|XP_002314145.1| predicted protein [Populus trichocarpa] gi|222850553|gb|EEE88100.1|
            predicted protein [Populus trichocarpa]
          Length = 257

 Score =  338 bits (866), Expect = 3e-90
 Identities = 174/259 (67%), Positives = 207/259 (79%), Gaps = 6/259 (2%)
 Frame = -3

Query: 1353 MAIRAIWKSKFPIIST--TILQNLVIPFQKPSSLTKLQNPNVEISSKGHFL---NMRNYH 1189
            M  RA+ +SK P  S+   ILQNL     K S + + Q P  + S+   FL    +R YH
Sbjct: 1    MLTRALSRSKIPNFSSIIVILQNLTT---KQSIIDQTQLPLSKASNIQSFLVPAGLRQYH 57

Query: 1188 DGRPRGPLWKGKKMIGKEALFVISGLKRFKEDED-KLNKFIKSHVLRLLKMDLIAVLTEL 1012
            DGRPRGPLW+GKK+IGKEALFVI GLKRFK D+D KL++FIK+HV RLLK+D+IAVL+EL
Sbjct: 58   DGRPRGPLWRGKKLIGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSEL 117

Query: 1011 ERQEEVSLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPD 832
            ERQEEVSLA+KIF +IQKQDWYKPDVYLYKDLI++L K+ KMEEAMK+WE M+NEDLFPD
Sbjct: 118  ERQEEVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNEDLFPD 177

Query: 831  CQTYSEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXLRNRVKEDF 652
             Q Y+E IRG+LR GSPADAMNIYEDMKKSPDPPEELPFRI          LRNRVK+D+
Sbjct: 178  SQMYTEAIRGYLRDGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDY 237

Query: 651  EEIFPDRHIYDPPEEIFGM 595
            EE+FP++H+YDPPEEIFG+
Sbjct: 238  EELFPEKHVYDPPEEIFGI 256