BLASTX nr result

ID: Coptis21_contig00005381 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005381
         (1208 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g...   117   6e-24
dbj|BAK06595.1| predicted protein [Hordeum vulgare subsp. vulgare]    114   4e-23
gb|ACM17601.1| F-box family-6 [Oryza sativa Indica Group]             110   7e-22
gb|EAY77591.1| hypothetical protein OsI_32630 [Oryza sativa Indi...   110   7e-22
ref|NP_001067476.1| Os11g0209100 [Oryza sativa Japonica Group] g...   109   2e-21

>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
            gi|222873903|gb|EEF11034.1| f-box family protein [Populus
            trichocarpa]
          Length = 453

 Score =  117 bits (293), Expect = 6e-24
 Identities = 105/338 (31%), Positives = 151/338 (44%), Gaps = 41/338 (12%)
 Frame = -2

Query: 1030 EDRICCLHEPLLHHILSFMDMKEVVQTSLLSKRWRNVWRSVSVLNFDEVEWSK------- 872
            EDRI  L   LLHHILSF+D  +VVQT +LSKRW NVW+S   L+F+   +S        
Sbjct: 34   EDRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYY 93

Query: 871  PRCKSKFMFFVDTVLLLRDGSDIHKFELFFATAHSGDSVRIERWIAYAIKRSVQVLDIAG 692
                + F  F+  VL+ R  +++  F+L   T        +E  I YA+K  V+ + I  
Sbjct: 94   DDDMNNFTDFIYHVLVRR--NNVKAFKLSLDTRRDCQYSVVESLIYYAVKHHVEEISINT 151

Query: 691  VSIASPNLI--CLFGCVNTLDL-----GAIVLP--------------GDEN--GNLILDL 581
                 P ++  C F C +   L     G + LP              G +N  G +    
Sbjct: 152  AHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQSLKTLHLGGAQNFDGKIFSSC 211

Query: 580  PILENLIIQSCDHCELISLTISGPKLKYLQLYN-TFPEINYGTSIKKSAPNLTSLKCKGY 404
            P LENL I+      + +  I    LK L++ N  +  I  G  +   AP LTS K  G 
Sbjct: 212  PNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCKVMLVAPKLTSFKFDGN 271

Query: 403  TYQDYTLENLSALVTAEIDAK----------INCKDEDADEVTTLNTLFGRCLSSILKGL 254
            T   ++  NL++L    +  +             +DE   E        G  L  +L   
Sbjct: 272  TPLFWSDVNLTSLDDVNVVLQRYHHSHNYPFYVVEDEYISEEDETEQGLGLNLIKMLHQF 331

Query: 253  TNAKSLTLSAHDFQVFEELPKLLDGVPNSYQNLKYLKL 140
             +AKSLTLS +  ++  E+P  LD  P+ + NLKYLKL
Sbjct: 332  CSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369


>dbj|BAK06595.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 384

 Score =  114 bits (286), Expect = 4e-23
 Identities = 104/327 (31%), Positives = 158/327 (48%), Gaps = 3/327 (0%)
 Frame = -2

Query: 1027 DRICCLHEPLLHHILSFMDMKEVVQTSLLSKRWRNVWRSVSVLNFDEVEWSKPRCKSKFM 848
            DR+  L + LLHH++SF+ M EVV+TSLLS RWR VWRS   +  D  E+     KSK  
Sbjct: 22   DRLSSLPDDLLHHVMSFLPMPEVVRTSLLSPRWRFVWRSTPFIRIDGAEFMD---KSKLE 78

Query: 847  FFVDTVLLLRD-GSDIHKFELFFATAHSGDSVRIERWIAYAIKRSVQVLDIAGVSIASPN 671
             FVD +LLL D  + + K  +   + H  D  +   WI +AI   V+VL I+G       
Sbjct: 79   NFVDCLLLLHDYTASLDKARI---SLHCIDHTKCSVWIRHAIMHKVRVLHISGPLSLDKT 135

Query: 670  LICLFGCVNTLDLGAIVLPGDENGNLILDLPILENLIIQSCDHCELISLTISGPKLKYLQ 491
             I     + T+ L + +L       L  D P+LE+L ++ C+ C+  +  IS   LK L 
Sbjct: 136  AIFPSQHLKTIRLQSAILRHGLFRPLNYDCPVLEHLELELCNFCD--NEEISSTSLKVLH 193

Query: 490  LYNTFPEINYGTSIKKSAPNLTSLKCKGYTYQDYTLENLSALVTAEIDAKINCKDEDADE 311
            +   +      TS+   A NLT L        D   ++LS+LVTA I + I+C D+D   
Sbjct: 194  ISQCY----LTTSLLICARNLTHLSILDPYIGDIVTKDLSSLVTASI-SLISCYDKDTVV 248

Query: 310  VTTLNTLFGRCLSSILKGLTNAKSLTLSAH-DFQVFE-ELPKLLDGVPNSYQNLKYLKLI 137
            +             +L GL++A +L L A  + + FE +LP         + NL  L + 
Sbjct: 249  MD----------HHLLDGLSHATTLELHAPLNERAFESDLPTW-----PMFSNLTSLVVG 293

Query: 136  EWCDKSHIYSLAKLLEIFPHLETLVME 56
             W   +  + L  +L+    L+ L ++
Sbjct: 294  NWVMTADFHPLHGILQRSDKLKELTVK 320


>gb|ACM17601.1| F-box family-6 [Oryza sativa Indica Group]
          Length = 440

 Score =  110 bits (275), Expect = 7e-22
 Identities = 103/364 (28%), Positives = 172/364 (47%), Gaps = 20/364 (5%)
 Frame = -2

Query: 1033 EEDRICCLHEPLLHHILSFMDMKEVVQTSLLSKRWRNVWRSVSVLNFDEVEWSKPRCKSK 854
            +EDR   L + +LHHIL  +  ++ V+T +L++RWR++W+  + L   + E  +P    K
Sbjct: 22   DEDRTGDLPDGILHHILGSLPARDAVRTCVLARRWRHLWKFATGLRITDREMREPAPMEK 81

Query: 853  FMFFVDTVLLLRDGSDIHKFELFFATAHS-GDSVRIERWIAYAIKRSVQVLD----IAGV 689
               FVD +LLLR  + +    L      S GD+ R+  W  +A+   VQVL     + G 
Sbjct: 82   LQDFVDHLLLLRGRAPLETCWLNLTRLSSDGDARRVNLWFRHAVLCEVQVLRLDLILNGF 141

Query: 688  SIASPNLICLFGCVNTLDLGAIVLPGDENGNLILDLPILENLIIQSCDHCELISLTISGP 509
             +   +L     C+  L+L  + L    +       P+LE+L I  CD  +   +T    
Sbjct: 142  QLKLDDLPLASRCLAKLNLSGVHLM--HSFPDFSCCPVLEHLDIFFCDLSDAKKITSQSM 199

Query: 508  KLKYLQLYNTFPEINYGTSIKKSAPNLTSLKCKGYTYQDYTLENLSALVTAEIDAKINCK 329
            K   ++ + TF +I   +  + SAPNL SL+ + Y ++    E +  +V A +  +++ +
Sbjct: 200  KCLNIR-HCTFSQI---SRTRISAPNLISLRLENYWHRTPVFEVMPLIVDAFV--RVHDR 253

Query: 328  DEDADEVTTLNTLFGRCLSS------------ILKGLTNAKSLTLSAH--DFQVFEELPK 191
              D    T+ N  F  CL              I++ L+ AK+L LSAH  +F    EL +
Sbjct: 254  SGDWYSCTSGNADFEECLCEDCDFCHSNTNCVIMQALSQAKNLVLSAHEQEFIFKRELMR 313

Query: 190  LLDGVPNSYQNLKYLKLIE-WCDKSHIYSLAKLLEIFPHLETLVMERRKRLIEFELEEGD 14
                   ++ NLK L LI  +C    ++ +  +L   P LE L++E       FE+ E D
Sbjct: 314  C-----PTFSNLKTLLLINCFCVAFDLHGITSILRHTPVLEKLILE-----FFFEVTEHD 363

Query: 13   WDAE 2
             + E
Sbjct: 364  DEVE 367


>gb|EAY77591.1| hypothetical protein OsI_32630 [Oryza sativa Indica Group]
          Length = 454

 Score =  110 bits (275), Expect = 7e-22
 Identities = 108/344 (31%), Positives = 166/344 (48%), Gaps = 19/344 (5%)
 Frame = -2

Query: 1030 EDRICCLHEPLLHHILSFMDMKEVVQTSLLSKRWRNVWRSVS---------VLNF----D 890
            EDR+  L E +LH ++SF+D ++ V+T +LS+RWR+VWR+V           LN+    D
Sbjct: 61   EDRLSDLPEGVLHRVMSFLDSRQAVRTCVLSRRWRDVWRTVPRVHADFCDFTLNWTSDDD 120

Query: 889  EV-EWSKPRCKSKFMFFVDTVLLLRD-GSDIHKFELFFATAHSGD--SVRIERWIAYAIK 722
            EV E +    +  F  FV+ +L LRD  + I  F L F  +  GD  S    RWI+YA++
Sbjct: 121  EVDEAAVAEDEVVFNRFVNRLLELRDPNASIRSFFLRFCRSDGGDDGSAEGNRWISYALQ 180

Query: 721  RSVQVLDIAGVSIASPNLICLFGC--VNTLDLGAIVLPGDENGNLILDLPILENLIIQSC 548
            ++V+VL++A +S A      +F    + T+D   +V+       L +  P LE L +   
Sbjct: 181  KNVRVLEVAVLSHALELDHSVFSSRYLRTMDFSNVVMNQGFFKQLEMGCPELEELFL--- 237

Query: 547  DHCELISLTISGPKLKYLQLYNTFPEINYGTSIKKSAPNLTSLKCKGYTYQDYTLENLSA 368
            D C ++   IS   LK L L  T     + TSI  S+P++TSL           L ++ A
Sbjct: 238  DECFIVDDEISSQTLKVLTLDATHFCCGFKTSI--SSPSITSLALHYPMSGKPVLNDMEA 295

Query: 367  LVTAEIDAKINCKDEDADEVTTLNTLFGRCLSSILKGLTNAKSLTLSAHDFQVFEELPKL 188
            L++  +   + C+ +D D            L   L  L N ++L  S H  ++  E    
Sbjct: 296  LMSTSM---LLCRVKDDD-------FAANDLRDYLWSLYNVENLDFSYHGKKLTME--NN 343

Query: 187  LDGVPNSYQNLKYLKLIEWCDKSHIYSLAKLLEIFPHLETLVME 56
            L   P  + NL  L L  WC  ++ Y L   L+  P LE L +E
Sbjct: 344  LQLCP-KFINLVSLTLGPWCLDANFYGLIVFLQNSPILEKLTLE 386


>ref|NP_001067476.1| Os11g0209100 [Oryza sativa Japonica Group] gi|77549216|gb|ABA92013.1|
            F-box domain containing protein, expressed [Oryza sativa
            Japonica Group] gi|113644698|dbj|BAF27839.1| Os11g0209100
            [Oryza sativa Japonica Group]
          Length = 416

 Score =  109 bits (272), Expect = 2e-21
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 18/362 (4%)
 Frame = -2

Query: 1033 EEDRICCLHEPLLHHILSFMDMKEVVQTSLLSKRWRNVWRSVSVLNFDEVEWSKPRCKSK 854
            +EDR   L + +LHHIL  +  ++  +T +L++RWR++W+  + L   + E  +P    K
Sbjct: 22   DEDRTGDLPDGILHHILGSLPARDAARTCVLARRWRHLWKFATGLRITDREMREPAPMEK 81

Query: 853  FMFFVDTVLLLRDGSDIHKFELFFATAHS-GDSVRIERWIAYAIKRSVQVLD----IAGV 689
               FVD +LLLR  + +    L      S GD+ R+  W  +A+   VQVL     + G 
Sbjct: 82   LQDFVDHLLLLRGRAPLETCWLNLTRLSSDGDARRVNLWFRHAVLCEVQVLRLDLILNGF 141

Query: 688  SIASPNLICLFGCVNTLDLGAIVLPGDENGNLILDLPILENLIIQSCDHCELISLTISGP 509
             +   +L     C+  L+L  + L    +       P+LE+L I  CD  +   +T    
Sbjct: 142  QLKLDDLPLASRCLAKLNLSGVHLM--HSFPDFSCCPVLEHLDIFFCDLSDAKKITSQSM 199

Query: 508  KLKYLQLYNTFPEINYGTSIKKSAPNLTSLKCKGYTYQDYTLENLSALVTAEIDAKINCK 329
            K   ++ + TF +I   +  + SAPNL SL+ + Y ++    E +  +V A +  +++ +
Sbjct: 200  KCLNIR-HCTFSQI---SRTRISAPNLISLRLENYWHRTPVFEVMPLIVDAFV--RVHDR 253

Query: 328  DEDADEVTTLNTLFGRCLSS------------ILKGLTNAKSLTLSAHDFQVFEELPKLL 185
              D    T+ N  F  CL              I++ L+ AK+L LSAH+ +      K L
Sbjct: 254  SGDWYSCTSGNADFEECLCEDCDFCHSNTNCVIMQALSQAKNLVLSAHEQEFI--FKKEL 311

Query: 184  DGVPNSYQNLKYLKLIE-WCDKSHIYSLAKLLEIFPHLETLVMERRKRLIEFELEEGDWD 8
               P ++ NLK L LI  +C    ++ +  +L   P +E L++E       FE+ E D +
Sbjct: 312  MRCP-TFSNLKTLLLINCFCVAFDLHGITSILRHTPVIEKLILE-----FFFEVTEHDDE 365

Query: 7    AE 2
             E
Sbjct: 366  VE 367


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