BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005375
         (456 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...   119   1e-26
ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containi...   105   4e-21
ref|XP_002318526.1| predicted protein [Populus trichocarpa] gi|2...    99   5e-19
ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containi...    98   6e-19
ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [S...    97   1e-18

>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score =  119 bits (297), Expect(2) = 1e-26
 Identities = 55/84 (65%), Positives = 66/84 (78%)
 Frame = -2

Query: 449 YGIKA*KEHYACMVDLYGRVGELEKAKKLIKSMPFEPDVVVWGALLGASGLHSNLAFGLF 270
           YGI+A  EHY+CMVDLYGR G  ++A+ LIK+MPFEPDVV+WGALL A GLHSNL  G +
Sbjct: 399 YGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEY 458

Query: 269 AAEAMYKLEKDHPAMYSLLSKIHG 198
           AAE + +LE  HP  YS+LSKI G
Sbjct: 459 AAERIRRLESSHPVSYSVLSKIQG 482



 Score = 25.8 bits (55), Expect(2) = 1e-26
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 193 VWTRVIELRKMMKQMGAKKR 134
           VW+ V ELR  MK+ G KK+
Sbjct: 486 VWSSVNELRDTMKERGIKKQ 505


>ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
 Frame = -2

Query: 449 YGIKA*KEHYACMVDLYGRVGELEKAKKLIKSMPFEPDVVVWGALLGASGLHSNLAFGLF 270
           + IK   EHYACMVDL GRVG LE+A + I+SMPFEPD +VWGALLGA G H+N+  G  
Sbjct: 531 HNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGRE 590

Query: 269 AAEAMYKLEKDHPAMYSLLSKIH-GHG-LDQSN*IEKDDEADGC*KEKAGSGVE 114
            AE ++KLE D+P  Y LLS I+  HG L++++ + +    +G  KE   S ++
Sbjct: 591 VAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWID 644


>ref|XP_002318526.1| predicted protein [Populus trichocarpa] gi|222859199|gb|EEE96746.1|
           predicted protein [Populus trichocarpa]
          Length = 552

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/85 (54%), Positives = 60/85 (70%)
 Frame = -2

Query: 455 RPYGIKA*KEHYACMVDLYGRVGELEKAKKLIKSMPFEPDVVVWGALLGASGLHSNLAFG 276
           R YGI A   HY CMVDL GR G+LE+A+ L+K+MPFEPD   WGALLGAS +H N   G
Sbjct: 309 RDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 368

Query: 275 LFAAEAMYKLEKDHPAMYSLLSKIH 201
             AA+ ++++E  +  MY LLSK++
Sbjct: 369 EKAAQIIFEMEPHNSGMYILLSKLY 393


>ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/85 (52%), Positives = 60/85 (70%)
 Frame = -2

Query: 455 RPYGIKA*KEHYACMVDLYGRVGELEKAKKLIKSMPFEPDVVVWGALLGASGLHSNLAFG 276
           + YGI    +HYACM+DL GR G LE+A+ LI++MPFEPD   WGALLGAS +H N+  G
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566

Query: 275 LFAAEAMYKLEKDHPAMYSLLSKIH 201
             AAE ++K+E  +  MY LLS ++
Sbjct: 567 EQAAEMVFKMEPHNSGMYVLLSNLY 591


>ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
           gi|241925606|gb|EER98750.1| hypothetical protein
           SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 45/85 (52%), Positives = 59/85 (69%)
 Frame = -2

Query: 455 RPYGIKA*KEHYACMVDLYGRVGELEKAKKLIKSMPFEPDVVVWGALLGASGLHSNLAFG 276
           R +G+ A  EHY CM+DL GR G L++A  L+K MPFEPD  +WGALLGAS +H N   G
Sbjct: 461 RDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELG 520

Query: 275 LFAAEAMYKLEKDHPAMYSLLSKIH 201
             AAE +++LE ++  MY LLS I+
Sbjct: 521 RNAAEKIFELEPENAGMYVLLSNIY 545