BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005374
         (261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...   119   3e-25
ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containi...    99   3e-19
ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containi...    94   9e-18
ref|XP_002318526.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [S...    93   3e-17

>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score =  119 bits (297), Expect = 3e-25
 Identities = 56/84 (66%), Positives = 64/84 (76%)
 Frame = -2

Query: 254 YGIKAEKEHYVCMVDRYGRVGALEKAEKLIKSMPFEPAVVVWGALLGASGLHSNLEFGLF 75
           YGI+AE EHY CMVD YGR G  ++AE LIK+MPFEP VV+WGALL A GLHSNLE G +
Sbjct: 399 YGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEY 458

Query: 74  VAEAMYKLEKDHPAMYSVLSKIHG 3
            AE + +LE  HP  YSVLSKI G
Sbjct: 459 AAERIRRLESSHPVSYSVLSKIQG 482


>ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 48/83 (57%), Positives = 60/83 (72%)
 Frame = -2

Query: 254 YGIKAEKEHYVCMVDRYGRVGALEKAEKLIKSMPFEPAVVVWGALLGASGLHSNLEFGLF 75
           + IK   EHY CMVD  GRVG LE+A + I+SMPFEP  +VWGALLGA G H+N+E G  
Sbjct: 531 HNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGRE 590

Query: 74  VAEAMYKLEKDHPAMYSVLSKIH 6
           VAE ++KLE D+P  Y +LS I+
Sbjct: 591 VAERLFKLEPDNPGNYMLLSNIY 613


>ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 41/85 (48%), Positives = 57/85 (67%)
 Frame = -2

Query: 260 RPYGIKAEKEHYVCMVDRYGRVGALEKAEKLIKSMPFEPAVVVWGALLGASGLHSNLEFG 81
           + YGI    +HY CM+D  GR G LE+A+ LI++MPFEP    WGALLGAS +H N+E G
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566

Query: 80  LFVAEAMYKLEKDHPAMYSVLSKIH 6
              AE ++K+E  +  MY +LS ++
Sbjct: 567 EQAAEMVFKMEPHNSGMYVLLSNLY 591


>ref|XP_002318526.1| predicted protein [Populus trichocarpa] gi|222859199|gb|EEE96746.1|
           predicted protein [Populus trichocarpa]
          Length = 552

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 43/85 (50%), Positives = 58/85 (68%)
 Frame = -2

Query: 260 RPYGIKAEKEHYVCMVDRYGRVGALEKAEKLIKSMPFEPAVVVWGALLGASGLHSNLEFG 81
           R YGI A+  HY CMVD  GR G LE+A+ L+K+MPFEP    WGALLGAS +H N E G
Sbjct: 309 RDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 368

Query: 80  LFVAEAMYKLEKDHPAMYSVLSKIH 6
              A+ ++++E  +  MY +LSK++
Sbjct: 369 EKAAQIIFEMEPHNSGMYILLSKLY 393


>ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
           gi|241925606|gb|EER98750.1| hypothetical protein
           SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 42/85 (49%), Positives = 58/85 (68%)
 Frame = -2

Query: 260 RPYGIKAEKEHYVCMVDRYGRVGALEKAEKLIKSMPFEPAVVVWGALLGASGLHSNLEFG 81
           R +G+ A+ EHY CM+D  GR G L++A  L+K MPFEP   +WGALLGAS +H N E G
Sbjct: 461 RDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELG 520

Query: 80  LFVAEAMYKLEKDHPAMYSVLSKIH 6
              AE +++LE ++  MY +LS I+
Sbjct: 521 RNAAEKIFELEPENAGMYVLLSNIY 545