BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00005290
         (908 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277519.1| PREDICTED: F-box protein SKIP1 [Vitis vinifera]   267   1e-80
ref|XP_003519156.1| PREDICTED: F-box protein SKIP1-like isoform ...   251   7e-73
ref|XP_002529409.1| F-box/LRR-repeat protein, putative [Ricinus ...   237   8e-71
ref|XP_003610294.1| F-box protein SKIP1 [Medicago truncatula] gi...   241   1e-69
gb|ACJ84674.1| unknown [Medicago truncatula] gi|388515861|gb|AFK...   241   3e-69

>ref|XP_002277519.1| PREDICTED: F-box protein SKIP1 [Vitis vinifera]
          Length = 308

 Score =  267 bits (682), Expect(2) = 1e-80
 Identities = 128/212 (60%), Positives = 148/212 (69%)
 Frame = -3

Query: 870 NSDWAELTHELLTNILTRLSIEDRWKGTMFVCKSWFEACKDPSLFSVFNLEPFFESGTES 691
           NSDW+ELTHE LTN+L+RL++ DRW G M VCKSW  ACKDPSLFS  +LE  F+S TES
Sbjct: 13  NSDWSELTHECLTNVLSRLTLHDRWTGPMLVCKSWLHACKDPSLFSTLDLEVHFDSPTES 72

Query: 690 PLWWAPSFERKIDCMLRNVVYWSGGDLKEIRIRHCSDHSLNFVAQRXXXXXXXXXXXXXX 511
             WW P FERKID MLR++  WSGG + EIR+RHCSD SL+F A                
Sbjct: 73  ARWWTPEFERKIDAMLRSIAEWSGGSITEIRVRHCSDRSLSFAAD--------------- 117

Query: 510 XXXXXXXXXXXXXXRCSNLQVFSIKSCPNVRDTSIAKIASACPMLLELDISYCYEISHES 331
                         RCSNL+V SIKSCPNV D S+A++A  C  L E+DISYCYEISHES
Sbjct: 118 --------------RCSNLEVLSIKSCPNVTDASMARVAFRCLKLREVDISYCYEISHES 163

Query: 330 LELIGRKCLNLKILRRNLMNWLDPSQHLGIVP 235
           L L+GR C NLKIL+RNLMNWLDPSQH+GIVP
Sbjct: 164 LILLGRNCPNLKILKRNLMNWLDPSQHIGIVP 195



 Score = 60.1 bits (144), Expect(2) = 1e-80
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = -1

Query: 119 EAAAIGKFMPQLKHLELRFSKLSAHGLVLITEGCPRLEY 3
           EAAAIGK MP L+HLELRFSK+SA GL LI +GC  LEY
Sbjct: 209 EAAAIGKTMPHLEHLELRFSKISAKGLALICDGCLNLEY 247


>ref|XP_003519156.1| PREDICTED: F-box protein SKIP1-like isoform 1 [Glycine max]
          Length = 306

 Score =  251 bits (640), Expect(2) = 7e-73
 Identities = 127/219 (57%), Positives = 144/219 (65%)
 Frame = -3

Query: 891 EITSNLANSDWAELTHELLTNILTRLSIEDRWKGTMFVCKSWFEACKDPSLFSVFNLEPF 712
           E   N   SDW+ELT E L NIL+RLS+EDRW+GTM VCKSWF   K+PSL  VFNL+P 
Sbjct: 4   ETEPNETESDWSELTRECLINILSRLSVEDRWRGTMLVCKSWFSVFKEPSLHFVFNLDPQ 63

Query: 711 FESGTESPLWWAPSFERKIDCMLRNVVYWSGGDLKEIRIRHCSDHSLNFVAQRXXXXXXX 532
           F+S TES  WW P FE KID MLR+VV W+   L  IRIRHCSD SL  VAQ        
Sbjct: 64  FDSPTESTRWWTPEFEAKIDNMLRSVVEWAQSSLTHIRIRHCSDRSLALVAQ-------- 115

Query: 531 XXXXXXXXXXXXXXXXXXXXXRCSNLQVFSIKSCPNVRDTSIAKIASACPMLLELDISYC 352
                                 C NL+V  I+SCP V D SI++IA +CP L ELDISYC
Sbjct: 116 ---------------------SCPNLEVLFIRSCPRVTDDSISRIALSCPKLRELDISYC 154

Query: 351 YEISHESLELIGRKCLNLKILRRNLMNWLDPSQHLGIVP 235
           YEI+HESL LIGR C NLK+L+RNLMNWLDPSQH GIVP
Sbjct: 155 YEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQHRGIVP 193



 Score = 50.4 bits (119), Expect(2) = 7e-73
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -1

Query: 122 EEAAAIGKFMPQLKHLELRFSKLSAHGLVLITEGCPRLEY 3
           +EAAAI   MP L+ LE+RFSKL+A GL  I +GCP LE+
Sbjct: 206 DEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEF 245


>ref|XP_002529409.1| F-box/LRR-repeat protein, putative [Ricinus communis]
           gi|223531157|gb|EEF33005.1| F-box/LRR-repeat protein,
           putative [Ricinus communis]
          Length = 313

 Score =  237 bits (604), Expect(2) = 8e-71
 Identities = 120/227 (52%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
 Frame = -3

Query: 906 GNEEEEI---TSNLANSDWAELTHELLTNILTRLSIEDRWKGTMFVCKSWFEACKDPSLF 736
           GNE +     T  ++ S W++LT+E L NIL+RL++E R  G M VCKSW  ACKDPSL+
Sbjct: 3   GNEGDTYGGNTETMSGSSWSDLTYECLINILSRLTLEHRCLGPMLVCKSWLNACKDPSLY 62

Query: 735 SVFNLEPFFESGTESPLWWAPSFERKIDCMLRNVVYWSGGDLKEIRIRHCSDHSLNFVAQ 556
            +FNLE  F S TES  WW P+FER+ID MLR++V +S G+L EIR RHCSD S+NFVA+
Sbjct: 63  KIFNLETQFNSTTESSRWWTPNFERQIDSMLRSIVVYSYGNLTEIRTRHCSDFSINFVAE 122

Query: 555 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSNLQVFSIKSCPNVRDTSIAKIASACPML 376
                                        RC NL+V  IKSCP++ D S+ +IA  C  L
Sbjct: 123 -----------------------------RCPNLEVLWIKSCPSLTDASMVQIAFKCTKL 153

Query: 375 LELDISYCYEISHESLELIGRKCLNLKILRRNLMNWLDPSQHLGIVP 235
            ELDISYCY ISHESL ++GR C NLK+L+RNLMNWLDPSQH G VP
Sbjct: 154 RELDISYCYGISHESLVMLGRNCPNLKVLKRNLMNWLDPSQHGGTVP 200



 Score = 57.4 bits (137), Expect(2) = 8e-71
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = -1

Query: 119 EAAAIGKFMPQLKHLELRFSKLSAHGLVLITEGCPRLEY 3
           EA AI KFMP L+HLE+RFSKLS+ GLV I EGC  LEY
Sbjct: 214 EANAIAKFMPHLEHLEVRFSKLSSKGLVSICEGCLNLEY 252


>ref|XP_003610294.1| F-box protein SKIP1 [Medicago truncatula]
           gi|355511349|gb|AES92491.1| F-box protein SKIP1
           [Medicago truncatula]
          Length = 302

 Score =  241 bits (614), Expect(2) = 1e-69
 Identities = 119/214 (55%), Positives = 146/214 (68%), Gaps = 1/214 (0%)
 Frame = -3

Query: 873 ANSDWAELTHELLTNILTRLSIEDRWKGTMFVCKSWFEACKD-PSLFSVFNLEPFFESGT 697
           + ++W ELT E L NIL+RLS ED+W+G++ VCKSWF A K+ PSL SVFNL+P+F+   
Sbjct: 5   SEAEWGELTRECLINILSRLSFEDQWRGSLLVCKSWFNAFKEEPSLHSVFNLDPYFDKPL 64

Query: 696 ESPLWWAPSFERKIDCMLRNVVYWSGGDLKEIRIRHCSDHSLNFVAQRXXXXXXXXXXXX 517
           ESP WW   FE +ID MLR++V W+   L +IRIRHCSD SL  VAQ             
Sbjct: 65  ESPRWWTLQFESQIDSMLRSIVQWTHIFLTQIRIRHCSDRSLALVAQ------------- 111

Query: 516 XXXXXXXXXXXXXXXXRCSNLQVFSIKSCPNVRDTSIAKIASACPMLLELDISYCYEISH 337
                           RC NL+V SI+SCP V D S++KIA+ CP L ELDISYCYEI+H
Sbjct: 112 ----------------RCPNLEVLSIRSCPRVTDDSMSKIATGCPNLRELDISYCYEITH 155

Query: 336 ESLELIGRKCLNLKILRRNLMNWLDPSQHLGIVP 235
           ESL LIGR C N+K+L+RNLMNWLDPSQH+GIVP
Sbjct: 156 ESLVLIGRNCSNIKVLKRNLMNWLDPSQHVGIVP 189



 Score = 49.7 bits (117), Expect(2) = 1e-69
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = -1

Query: 119 EAAAIGKFMPQLKHLELRFSKLSAHGLVLITEGCPRLEY 3
           EAAAI   MP L+ LE+RFSKL+A GL  I +GCP LE+
Sbjct: 203 EAAAIANSMPHLEGLEIRFSKLTAKGLNSICQGCPNLEF 241


>gb|ACJ84674.1| unknown [Medicago truncatula] gi|388515861|gb|AFK45992.1| unknown
           [Medicago truncatula]
          Length = 302

 Score =  241 bits (614), Expect(2) = 3e-69
 Identities = 119/214 (55%), Positives = 146/214 (68%), Gaps = 1/214 (0%)
 Frame = -3

Query: 873 ANSDWAELTHELLTNILTRLSIEDRWKGTMFVCKSWFEACKD-PSLFSVFNLEPFFESGT 697
           + ++W ELT E L NIL+RLS ED+W+G++ VCKSWF A K+ PSL SVFNL+P+F+   
Sbjct: 5   SEAEWGELTRECLINILSRLSFEDQWRGSLLVCKSWFNAFKEEPSLHSVFNLDPYFDKPL 64

Query: 696 ESPLWWAPSFERKIDCMLRNVVYWSGGDLKEIRIRHCSDHSLNFVAQRXXXXXXXXXXXX 517
           ESP WW   FE +ID MLR++V W+   L +IRIRHCSD SL  VAQ             
Sbjct: 65  ESPRWWTLQFESQIDSMLRSIVQWTHIFLTQIRIRHCSDRSLALVAQ------------- 111

Query: 516 XXXXXXXXXXXXXXXXRCSNLQVFSIKSCPNVRDTSIAKIASACPMLLELDISYCYEISH 337
                           RC NL+V SI+SCP V D S++KIA+ CP L ELDISYCYEI+H
Sbjct: 112 ----------------RCPNLEVLSIRSCPRVTDDSMSKIATGCPNLRELDISYCYEITH 155

Query: 336 ESLELIGRKCLNLKILRRNLMNWLDPSQHLGIVP 235
           ESL LIGR C N+K+L+RNLMNWLDPSQH+GIVP
Sbjct: 156 ESLVLIGRNCSNIKVLKRNLMNWLDPSQHVGIVP 189



 Score = 48.1 bits (113), Expect(2) = 3e-69
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = -1

Query: 119 EAAAIGKFMPQLKHLELRFSKLSAHGLVLITEGCPRLEY 3
           EA AI   MP L+ LE+RFSKL+A GL  I +GCP LE+
Sbjct: 203 EAVAIANSMPHLEGLEIRFSKLTAKGLNSICQGCPNLEF 241