BLASTX nr result
ID: Coptis21_contig00005094
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00005094 (1108 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding prote... 93 5e-21 ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|2... 89 3e-15 ref|XP_002532469.1| double-stranded RNA binding protein, putativ... 77 1e-13 ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798... 71 2e-12 ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago ... 71 4e-12 >ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera] Length = 333 Score = 92.8 bits (229), Expect(2) = 5e-21 Identities = 45/71 (63%), Positives = 54/71 (76%) Frame = +3 Query: 3 DMTYCKSILNEFAVKIGLEMPIYTTTQSNGLIPVFISTLDFHGKTYTSTPARSKKEAEQM 182 D +CKSILNEFAVK+ LE P YTT Q GL+PVF+S+L F+G TYT R+KKEAEQ+ Sbjct: 104 DTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQL 163 Query: 183 GARSVIQFILG 215 AR+VI ILG Sbjct: 164 AARTVILSILG 174 Score = 35.4 bits (80), Expect(2) = 5e-21 Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 32/171 (18%) Frame = +1 Query: 271 VIQFILGTE-AGSLLSQIIKSKRKFFDAL-----PKVSKNAMLPMA------PCSKK--- 405 VI ILG +G+LLS+IIKSK K + AL P +LP+ PC K Sbjct: 168 VILSILGNSGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPIGLTSGIPPCKGKEVE 227 Query: 406 -----------------SAQIRDAPEIHSDVQPLKRAKLEHLCGCSTGVVENLTSDQTRL 534 S Q+ P H V L++ K S+ V+ S + Sbjct: 228 VAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPK----PNVSSEVIAPPISFVPSV 283 Query: 535 IGGLVTAAGTSGSXXXXXXXXXXDQREMMTDGCLQQNAYSVIQASPCSIAQ 687 + + T+G + +++ TD L + QASPCS+AQ Sbjct: 284 FEQPLVVSPTTGRKRNRKNKKKAN-KKLRTDAQLPVAVLPLNQASPCSVAQ 333 >ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa] Length = 452 Score = 88.6 bits (218), Expect = 3e-15 Identities = 43/71 (60%), Positives = 52/71 (73%) Frame = +3 Query: 3 DMTYCKSILNEFAVKIGLEMPIYTTTQSNGLIPVFISTLDFHGKTYTSTPARSKKEAEQM 182 D +CKSILNEFAVK+ E P Y T QS GL+PVFISTL F G +YT R+KKEAEQ+ Sbjct: 221 DTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEAEQL 280 Query: 183 GARSVIQFILG 215 AR+VI ++G Sbjct: 281 AARAVILSLIG 291 >ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 289 Score = 77.0 bits (188), Expect(2) = 1e-13 Identities = 36/70 (51%), Positives = 48/70 (68%) Frame = +3 Query: 3 DMTYCKSILNEFAVKIGLEMPIYTTTQSNGLIPVFISTLDFHGKTYTSTPARSKKEAEQM 182 D CKSILNE+AVK+ LEMP Y T + GL P+F+S+ F+G TY R+KKEAEQ+ Sbjct: 97 DTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFVSSSVFNGVTYNGDIGRTKKEAEQL 156 Query: 183 GARSVIQFIL 212 AR+ + +L Sbjct: 157 AARAAVLSLL 166 Score = 26.6 bits (57), Expect(2) = 1e-13 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Frame = +1 Query: 271 VIQFILGTEAGSLLSQIIKSKRKFFDALPKV----SKNAMLPMAPCSKKS-----AQIRD 423 V+ + E+G ++S+ KSKRK + K ++N+ +P+ K+ + + Sbjct: 162 VLSLLRNVESGEIISKFFKSKRKLYVGFHKSDSQDAQNSNMPVVGKDIKTEALMVSNVVP 221 Query: 424 APEIHSDVQP----LKRAKLEHLC 483 PE S + P + K E +C Sbjct: 222 IPEAASALHPPHHEFTKTKPEKIC 245 >ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max] Length = 434 Score = 70.9 bits (172), Expect(2) = 2e-12 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 2/70 (2%) Frame = +3 Query: 12 YCKSILNEFAVKIGLEMPIYTTTQSN--GLIPVFISTLDFHGKTYTSTPARSKKEAEQMG 185 + KSI+NE+A K+ +E P Y T Q G++P+FI++L F+G +YT PAR+KKEAEQ Sbjct: 86 FSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFITSLVFNGTSYTGDPARTKKEAEQSA 145 Query: 186 ARSVIQFILG 215 A++ I I+G Sbjct: 146 AKAAILSIMG 155 Score = 28.5 bits (62), Expect(2) = 2e-12 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +1 Query: 271 VIQFILGTEAGSLLSQIIKSKRKFFDALPKVSKNAMLPMAPCSKKSA 411 ++ + + +G++L +IIKSK F+DA+ ++ P A S +A Sbjct: 150 ILSIMGDSSSGTVLVEIIKSKSIFYDAIKGKGRSLSQPSAVLSTTNA 196 >ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula] gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula] Length = 357 Score = 70.9 bits (172), Expect(2) = 4e-12 Identities = 30/70 (42%), Positives = 49/70 (70%) Frame = +3 Query: 6 MTYCKSILNEFAVKIGLEMPIYTTTQSNGLIPVFISTLDFHGKTYTSTPARSKKEAEQMG 185 +T+CK++LNE+A K+ +++P Y + + +IP F+ TLD +G +YT AR KK+A ++ Sbjct: 110 VTFCKTVLNEYASKLSIQLPTYKSVEYKEVIPYFVCTLDLNGTSYTGDAARRKKDAVELA 169 Query: 186 ARSVIQFILG 215 AR+ I ILG Sbjct: 170 ARAAILSILG 179 Score = 27.3 bits (59), Expect(2) = 4e-12 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +1 Query: 271 VIQFILGTEAGSLLSQIIKSKRKFFDA 351 ++ + + +G LL+QIIK+K K FD+ Sbjct: 174 ILSILGNSNSGVLLAQIIKTKAKLFDS 200