BLASTX nr result

ID: Coptis21_contig00004999 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004999
         (1821 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273909.1| PREDICTED: U-box domain-containing protein 4...   280   7e-73
ref|XP_002530997.1| conserved hypothetical protein [Ricinus comm...   259   2e-66
ref|XP_002305388.1| predicted protein [Populus trichocarpa] gi|2...   252   3e-64
ref|XP_002302956.1| predicted protein [Populus trichocarpa] gi|2...   250   1e-63
ref|XP_002305204.1| predicted protein [Populus trichocarpa] gi|2...   249   1e-63

>ref|XP_002273909.1| PREDICTED: U-box domain-containing protein 4 [Vitis vinifera]
           gi|147807233|emb|CAN61950.1| hypothetical protein
           VITISV_002189 [Vitis vinifera]
          Length = 378

 Score =  280 bits (717), Expect = 7e-73
 Identities = 150/246 (60%), Positives = 189/246 (76%)
 Frame = -2

Query: 740 ESEKTASSSIVNQTIELIKSNDPYSKIQAAKEIRRLTKTSLKYRRHFSSTIEPLVSMLKS 561
           ++ +TA+++ VN+T+ L++S+DP S+IQAAKEIRRLTKTS K RR  S  + PLVSML+ 
Sbjct: 15  DTPRTATTA-VNRTLHLLQSDDPDSQIQAAKEIRRLTKTSQKCRRQLSPAVRPLVSMLRL 73

Query: 560 ASLDYIEFSLLALLNLAVKDEKNKIKIIDAGALEPLISLLWSGNSNLREYXXXXXXXXXX 381
            SLD  E +LLALLNLAVKDEKNK+ I+ +GALEP+IS L S NSN++EY          
Sbjct: 74  DSLDSNEAALLALLNLAVKDEKNKVNIVASGALEPIISFLQSQNSNMQEYATASLLTLSA 133

Query: 380 XAVNKPTITASGAIPLLVEVLRDGSPQAKIDALMTLYNLSTHRENLSIILSAGAIRPIVN 201
             +NKPTI+A+GAIPLLVE+LR GSPQA++DA++ LYNLST+ +N+SIIL A  I  IV+
Sbjct: 134 STINKPTISAAGAIPLLVEILRHGSPQARVDAVLALYNLSTYSDNISIILEAKPIPSIVD 193

Query: 200 LLRSCKKSSKTAEKCTALLESLLGFDEGRNALTXXXXXXXXXXXXXENGSLQSREHAVGA 21
           LL++CKKSSKT EKC+AL+ESL+ FDEGR ALT             ENGSLQSREHAVGA
Sbjct: 194 LLKTCKKSSKTTEKCSALIESLVAFDEGRTALTSEEGGVLAVVEVLENGSLQSREHAVGA 253

Query: 20  LLTMCE 3
           LLTMC+
Sbjct: 254 LLTMCQ 259


>ref|XP_002530997.1| conserved hypothetical protein [Ricinus communis]
            gi|223529424|gb|EEF31385.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 227

 Score =  259 bits (661), Expect = 2e-66
 Identities = 119/174 (68%), Positives = 144/174 (82%)
 Frame = +1

Query: 772  MGSKQGPPKHQNKFAWKPDAFNPKNETEVGGKRRPFSDITGVCPRCKTQIEWKRKYGKYK 951
            M  +QGPPKHQN+FAW+P+A +  NETEVGGK RP S+ITGVCPRCK QI+WKR+YGKYK
Sbjct: 1    MSKRQGPPKHQNRFAWQPNAGHKINETEVGGKLRPLSEITGVCPRCKEQIDWKRRYGKYK 60

Query: 952  PLSEPAKCQRCSKRAVRQAYHSLCSACAKDSNVCAKCLCHVERIVGRDLSEVEAEKKALE 1131
            PLSEPAKCQ+CSKR VRQAYH+LC+ACAK+  VCAKC C V  I+GRD +E+EAE+K LE
Sbjct: 61   PLSEPAKCQQCSKRTVRQAYHNLCTACAKEQKVCAKCRCRVANIIGRDSAEIEAEQKMLE 120

Query: 1132 DAIKNSRERDRRTLLRAMNKGTAGSSVNTTTGDVKKVEELFTAASVDEYAGLSR 1293
            +AIKN+RERDRR+LLRAMNKGT  SS    + +  KV +LF +AS++EYA  SR
Sbjct: 121  EAIKNARERDRRSLLRAMNKGTPKSSEKVASNEGNKVGDLFPSASLEEYAAKSR 174


>ref|XP_002305388.1| predicted protein [Populus trichocarpa] gi|222848352|gb|EEE85899.1|
            predicted protein [Populus trichocarpa]
          Length = 231

 Score =  252 bits (643), Expect = 3e-64
 Identities = 113/174 (64%), Positives = 141/174 (81%)
 Frame = +1

Query: 772  MGSKQGPPKHQNKFAWKPDAFNPKNETEVGGKRRPFSDITGVCPRCKTQIEWKRKYGKYK 951
            M +KQGPPKHQN +AWKP+A    NETEVGG+ +P S+ITGVC RCK QI+WKR+YGKYK
Sbjct: 1    MSNKQGPPKHQNNYAWKPNAGRKINETEVGGRLKPLSEITGVCQRCKEQIDWKRRYGKYK 60

Query: 952  PLSEPAKCQRCSKRAVRQAYHSLCSACAKDSNVCAKCLCHVERIVGRDLSEVEAEKKALE 1131
            PL+EPAKCQ+CSKR VRQAYH+LC+ACAK+  VCAKC CHV+RI+GRDL++VEAE+K LE
Sbjct: 61   PLTEPAKCQKCSKRTVRQAYHNLCTACAKEQKVCAKCRCHVDRIIGRDLADVEAEQKTLE 120

Query: 1132 DAIKNSRERDRRTLLRAMNKGTAGSSVNTTTGDVKKVEELFTAASVDEYAGLSR 1293
            +AIKN+RERDRR L+RAMNKG         T +  +V +LF ++S++EYA   R
Sbjct: 121  EAIKNARERDRRALIRAMNKGKPMGLTKNPTNEGNRVGDLFPSSSLEEYAAKGR 174


>ref|XP_002302956.1| predicted protein [Populus trichocarpa] gi|222844682|gb|EEE82229.1|
           predicted protein [Populus trichocarpa]
          Length = 379

 Score =  250 bits (638), Expect = 1e-63
 Identities = 140/244 (57%), Positives = 173/244 (70%), Gaps = 3/244 (1%)
 Frame = -2

Query: 725 ASSSIVNQTIELIKSNDPYSKIQAAKEIRRLTKTSLKYRRHFSSTIEPLVSMLKSASLDY 546
           +SS+ V + + LI+S D   KI+AAK+IRRLTKTS + RR  +  ++PLV ML+    D 
Sbjct: 29  SSSAAVRRALRLIQSEDLSLKIEAAKDIRRLTKTSQRCRRQLADAVKPLVCMLRVGDDDS 88

Query: 545 IEFS---LLALLNLAVKDEKNKIKIIDAGALEPLISLLWSGNSNLREYXXXXXXXXXXXA 375
           +E S   LLALLNLAVKDEKNKI I++AGALEP+IS L S NS LRE            +
Sbjct: 89  VELSESALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNSILRECATASLLTLSASS 148

Query: 374 VNKPTITASGAIPLLVEVLRDGSPQAKIDALMTLYNLSTHRENLSIILSAGAIRPIVNLL 195
           +NK  I+A+GAIPLLV++LR+G+ QAK+DA+M L NLSTH  NL IIL    I  IV+LL
Sbjct: 149 INKQVISATGAIPLLVDILRNGNTQAKVDAVMALSNLSTHSNNLDIILKTNPIPSIVSLL 208

Query: 194 RSCKKSSKTAEKCTALLESLLGFDEGRNALTXXXXXXXXXXXXXENGSLQSREHAVGALL 15
           ++CKKSSKTAEKC AL+ESL+GF EGR ALT             ENGSLQSREHAVGALL
Sbjct: 209 KTCKKSSKTAEKCCALIESLVGFHEGRTALTSEEGGILAVVEVLENGSLQSREHAVGALL 268

Query: 14  TMCE 3
           T+C+
Sbjct: 269 TLCQ 272


>ref|XP_002305204.1| predicted protein [Populus trichocarpa] gi|222848168|gb|EEE85715.1|
           predicted protein [Populus trichocarpa]
          Length = 389

 Score =  249 bits (637), Expect = 1e-63
 Identities = 141/241 (58%), Positives = 172/241 (71%), Gaps = 2/241 (0%)
 Frame = -2

Query: 719 SSIVNQTIELIKSNDPYSKIQAAKEIRRLTKTSLKYRRHFSSTIEPLVSMLKSASLDYIE 540
           S+ V + + LI+S+D   KI+AAKEIRRLTKTS + RR  +  ++PLV ML+    D +E
Sbjct: 28  SAAVCRALLLIQSDDLSLKIEAAKEIRRLTKTSQRCRRQLADAVKPLVCMLRVGDDDSVE 87

Query: 539 --FSLLALLNLAVKDEKNKIKIIDAGALEPLISLLWSGNSNLREYXXXXXXXXXXXAVNK 366
              +LLALLNLAVKDEKNKI I++AGALE +IS L S NS L+EY            +NK
Sbjct: 88  NESALLALLNLAVKDEKNKISIVEAGALESIISFLQSQNSILQEYATASLLTLSASTINK 147

Query: 365 PTITASGAIPLLVEVLRDGSPQAKIDALMTLYNLSTHRENLSIILSAGAIRPIVNLLRSC 186
           P I+A GAIPLLVE+LR+G  QAK+DA+M L NLSTH +NL IIL    I  IV+LL++C
Sbjct: 148 PVISACGAIPLLVEILRNGITQAKVDAVMALSNLSTHSDNLDIILKTNPIPSIVSLLKTC 207

Query: 185 KKSSKTAEKCTALLESLLGFDEGRNALTXXXXXXXXXXXXXENGSLQSREHAVGALLTMC 6
           KKSSKTAEKC AL+ESL+GFDEGR ALT             ENGSLQSREHAVGALLT+C
Sbjct: 208 KKSSKTAEKCCALIESLVGFDEGRIALTSEEGGILAVIEVLENGSLQSREHAVGALLTLC 267

Query: 5   E 3
           +
Sbjct: 268 Q 268


Top