BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004952
         (1610 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containi...   615   e-173
emb|CBI15328.3| unnamed protein product [Vitis vinifera]              615   e-173
ref|XP_003536123.1| PREDICTED: pentatricopeptide repeat-containi...   597   e-168
ref|XP_004138218.1| PREDICTED: pentatricopeptide repeat-containi...   592   e-167
ref|XP_002514631.1| pentatricopeptide repeat-containing protein,...   590   e-166

>ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Vitis vinifera]
          Length = 516

 Score =  615 bits (1586), Expect = e-173
 Identities = 300/471 (63%), Positives = 368/471 (78%)
 Frame = +2

Query: 23   YPKTLSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFTHIQLTP 202
            +P +   S+ P+   ++ H      I+Q ++ ELLK  + + +P+ QRL L F+HI  +P
Sbjct: 52   FPLSRRFSSQPNNSADDDH----SQIAQSLSSELLKDPDSEPVPIIQRLQLSFSHITPSP 107

Query: 203  SLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSG 382
             L LQ LN S +AGR+VL F++W+S+ P F H DET S+ VDYFGRRKDFK IH+VL+ G
Sbjct: 108  PLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDG 167

Query: 383  KGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASH 562
            +   G+KTL S IDRLVRAGR +Q V+FF+RME +YGF RDR+SL +VV+ LC+HGFASH
Sbjct: 168  RNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASH 227

Query: 563  AEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDC 742
            AEK+VK++ANE FP+E  CD+L++GWCVDGKLDEA+RLA EM+RGGFE+GT+AYNSILDC
Sbjct: 228  AEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDC 287

Query: 743  VCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMG 922
            +CKLCRKKDPFRL+ EAEKIL++MDVAG+PRN ETFNVLI N CKIRKTE+A+ LF RMG
Sbjct: 288  ICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMG 347

Query: 923  EWGCAPDSTTYLVLIRSLFQAARVGEGDEMIDRMKSAGFGDAVDKKAYYGFLKILCGIER 1102
            EWGC P+ TT+LVL RSL+QAARVGEGDEMIDRMKSAGFG+A+DKKAYY F+KILCGIER
Sbjct: 348  EWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIER 407

Query: 1103 IDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQPIVYKV 1282
            IDHAM +F KMK DGCKPG+ TYDLL+GKL AHGR ++ANALF EA+ + +PV+   YK+
Sbjct: 408  IDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVESKAYKL 467

Query: 1283 DPRFAXXXXXXXXXXXXRETLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1435
            DPRF             RETLPEKMA           SFVKKP K MRRAF
Sbjct: 468  DPRFV-KKPTVAKKEKKRETLPEKMARKRRRLRKIRLSFVKKP-KRMRRAF 516


>emb|CBI15328.3| unnamed protein product [Vitis vinifera]
          Length = 532

 Score =  615 bits (1586), Expect = e-173
 Identities = 300/471 (63%), Positives = 368/471 (78%)
 Frame = +2

Query: 23   YPKTLSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFTHIQLTP 202
            +P +   S+ P+   ++ H      I+Q ++ ELLK  + + +P+ QRL L F+HI  +P
Sbjct: 68   FPLSRRFSSQPNNSADDDH----SQIAQSLSSELLKDPDSEPVPIIQRLQLSFSHITPSP 123

Query: 203  SLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSG 382
             L LQ LN S +AGR+VL F++W+S+ P F H DET S+ VDYFGRRKDFK IH+VL+ G
Sbjct: 124  PLILQTLNTSPDAGRTVLGFYKWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDG 183

Query: 383  KGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASH 562
            +   G+KTL S IDRLVRAGR +Q V+FF+RME +YGF RDR+SL +VV+ LC+HGFASH
Sbjct: 184  RNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASH 243

Query: 563  AEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDC 742
            AEK+VK++ANE FP+E  CD+L++GWCVDGKLDEA+RLA EM+RGGFE+GT+AYNSILDC
Sbjct: 244  AEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDC 303

Query: 743  VCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMG 922
            +CKLCRKKDPFRL+ EAEKIL++MDVAG+PRN ETFNVLI N CKIRKTE+A+ LF RMG
Sbjct: 304  ICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMG 363

Query: 923  EWGCAPDSTTYLVLIRSLFQAARVGEGDEMIDRMKSAGFGDAVDKKAYYGFLKILCGIER 1102
            EWGC P+ TT+LVL RSL+QAARVGEGDEMIDRMKSAGFG+A+DKKAYY F+KILCGIER
Sbjct: 364  EWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIER 423

Query: 1103 IDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQPIVYKV 1282
            IDHAM +F KMK DGCKPG+ TYDLL+GKL AHGR ++ANALF EA+ + +PV+   YK+
Sbjct: 424  IDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVESKAYKL 483

Query: 1283 DPRFAXXXXXXXXXXXXRETLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1435
            DPRF             RETLPEKMA           SFVKKP K MRRAF
Sbjct: 484  DPRFV-KKPTVAKKEKKRETLPEKMARKRRRLRKIRLSFVKKP-KRMRRAF 532


>ref|XP_003536123.1| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Glycine max]
          Length = 509

 Score =  597 bits (1540), Expect = e-168
 Identities = 297/472 (62%), Positives = 353/472 (74%), Gaps = 3/472 (0%)
 Frame = +2

Query: 23   YPKTLSTSTPPSFEHNNKHLPT---TENISQEITQELLKHTNEDSLPLPQRLDLHFTHIQ 193
            Y +TL T   PSF    +H  +   T+ I+  ++ ELLK  + D+L + QRL+L F+HI 
Sbjct: 42   YSRTLFT---PSF-FITRHFSSETQTDEIASSLSSELLKEPDSDALSVSQRLNLSFSHIT 97

Query: 194  LTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVL 373
             TP+L LQ LN S +AGR+VL FHQW+S+ P F H D+T SY VDYFGRRKDFK  HDVL
Sbjct: 98   PTPNLILQTLNLSPQAGRTVLGFHQWLSSNPQFSHTDDTLSYFVDYFGRRKDFKATHDVL 157

Query: 374  VSGKGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGF 553
             +     G KTLAS IDRLVRAGR SQ V FFERME++YG  RDRDSLK+VV  LC  GF
Sbjct: 158  AAASPAAGPKTLASAIDRLVRAGRSSQAVQFFERMERDYGLKRDRDSLKVVVEKLCSEGF 217

Query: 554  ASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSI 733
            AS+AEKMVK LA EFFPDE TCD+L+RGWC+DGKLDEA+RLAGEMYRGGF+LG  AYN++
Sbjct: 218  ASYAEKMVKDLAREFFPDEATCDMLIRGWCIDGKLDEAQRLAGEMYRGGFDLGVGAYNAM 277

Query: 734  LDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFE 913
            LDCVCKLCR+KDPF+L  EAEK+L+EM+  G+PRNTETFNVLI N CKIRKTE+AL L  
Sbjct: 278  LDCVCKLCREKDPFQLHSEAEKVLVEMEYRGVPRNTETFNVLITNLCKIRKTEDALGLLH 337

Query: 914  RMGEWGCAPDSTTYLVLIRSLFQAARVGEGDEMIDRMKSAGFGDAVDKKAYYGFLKILCG 1093
             MGEWGC P+ TT+LVLIRSL+QAAR+ EGDEMIDRM+SAGFG+ +DKKAYY FLKILCG
Sbjct: 338  SMGEWGCYPNETTFLVLIRSLYQAARLEEGDEMIDRMRSAGFGEFLDKKAYYQFLKILCG 397

Query: 1094 IERIDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQPIV 1273
            IER+DHA+ +F  MK DGC+PGV TYDLL+GKLGAH R ++ NALF EA  + LPV    
Sbjct: 398  IERVDHALSVFAMMKDDGCEPGVITYDLLMGKLGAHNRIDKVNALFNEAKSRGLPVILKE 457

Query: 1274 YKVDPRFAXXXXXXXXXXXXRETLPEKMAXXXXXXXXXXXSFVKKPTKMMRR 1429
            Y VDPR+             RETLPEKMA           S+VKKP ++M R
Sbjct: 458  YAVDPRYLKKKKKVVKGVKKRETLPEKMARKRSRLKQIRLSYVKKPKRVMGR 509


>ref|XP_004138218.1| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Cucumis sativus]
            gi|449477122|ref|XP_004154936.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g60960,
            mitochondrial-like [Cucumis sativus]
          Length = 522

 Score =  592 bits (1527), Expect = e-167
 Identities = 292/478 (61%), Positives = 352/478 (73%)
 Frame = +2

Query: 2    FSNPLFLYPKTLSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHF 181
            FS+PL+L     S S   S E  N H+  T   SQ +  ELLK  + D LP+ QRL L F
Sbjct: 54   FSSPLYL-----SLSHSFSSESVNNHVDQT---SQSLASELLKDPDSDPLPITQRLQLSF 105

Query: 182  THIQLTPSLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVI 361
            +H++  P L    LN SSEAGR+VL F++W+ + P F H DET SY VD+FGRRKDF  +
Sbjct: 106  SHVKPNPELVRNTLNLSSEAGRTVLGFNEWLVSNPDFHHTDETISYFVDFFGRRKDFNAV 165

Query: 362  HDVLVSGKGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALC 541
             +VL  G GI G KTL S I R  RAGR ++ ++FFE ME  YG  RD++SL++VV  LC
Sbjct: 166  QEVLAKGLGINGPKTLKSSIHRFARAGRPTKLISFFETMETNYGLKRDKESLRMVVEKLC 225

Query: 542  DHGFASHAEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLA 721
            ++GF SHAEKMVK LANEFFPDE  CD L++GWCV+ KLDEAKRLAGEMYRGGFELGT A
Sbjct: 226  ENGFGSHAEKMVKDLANEFFPDEAICDTLIKGWCVNEKLDEAKRLAGEMYRGGFELGTTA 285

Query: 722  YNSILDCVCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEAL 901
            YN++LDCVCKLCRKKDPFRL  EAE+IL+EMD  G+PRN ETFNVLINN CKIR+T +A+
Sbjct: 286  YNALLDCVCKLCRKKDPFRLDSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRRTTDAV 345

Query: 902  NLFERMGEWGCAPDSTTYLVLIRSLFQAARVGEGDEMIDRMKSAGFGDAVDKKAYYGFLK 1081
            NLF RMGEWGC P++ T+L+LIRSL+QAAR GEGDEMIDRMKS G+GDA+DKKAYY F+ 
Sbjct: 346  NLFHRMGEWGCHPNAETFLILIRSLYQAARTGEGDEMIDRMKSVGYGDALDKKAYYEFMN 405

Query: 1082 ILCGIERIDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPV 1261
            ILCGIERIDHA+ +F KMK DGC+PG+ TYDLL+GKL AH R ++AN+LF EA K+ +PV
Sbjct: 406  ILCGIERIDHALVVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPV 465

Query: 1262 QPIVYKVDPRFAXXXXXXXXXXXXRETLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1435
             P  Y+VDP++             RETLPEKMA           SFVKKP + MRRAF
Sbjct: 466  TPKAYQVDPKYV-KKPKDKKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 522


>ref|XP_002514631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223546235|gb|EEF47737.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 569

 Score =  590 bits (1522), Expect = e-166
 Identities = 287/471 (60%), Positives = 357/471 (75%), Gaps = 2/471 (0%)
 Frame = +2

Query: 29   KTLSTSTPPSFEHNNKHLPTTENISQEITQELLKHTNEDSLPLPQRLDLHFTHIQ--LTP 202
            K  ST T      NN  L     I+Q I+ EL+K+ N DSL + QRL+LHF+HI   +TP
Sbjct: 103  KPFSTQT---LNPNNNVLEDPNPIAQSISAELIKNPNSDSLSILQRLNLHFSHINNSITP 159

Query: 203  SLYLQVLNQSSEAGRSVLDFHQWVSTRPGFKHDDETFSYIVDYFGRRKDFKVIHDVLVSG 382
            S+ LQ LN S +AGR+VL FHQW+     FK+ DET S+ +DYFGRRKDF+  H++L   
Sbjct: 160  SIILQTLNLSPDAGRTVLGFHQWLVKVANFKNTDETISFFIDYFGRRKDFQSTHELLCDS 219

Query: 383  KGITGSKTLASCIDRLVRAGRDSQTVAFFERMEKEYGFVRDRDSLKLVVTALCDHGFASH 562
            K + G K   S ++RLVRAGR ++ + FF+RME++YGF RDR++L+LVV  LCD+G+AS+
Sbjct: 220  KDVIGYKCFESMVNRLVRAGRATKVMGFFDRMERDYGFKRDRENLRLVVKMLCDNGYASY 279

Query: 563  AEKMVKSLANEFFPDEVTCDILVRGWCVDGKLDEAKRLAGEMYRGGFELGTLAYNSILDC 742
            AEKMVK+LANE FPDE  CD+L++GWCVDGKLDEAKRLAGEMYRGGFE+GT+AYN+ILDC
Sbjct: 280  AEKMVKNLANEIFPDENICDLLIKGWCVDGKLDEAKRLAGEMYRGGFEIGTVAYNAILDC 339

Query: 743  VCKLCRKKDPFRLQGEAEKILIEMDVAGIPRNTETFNVLINNFCKIRKTEEALNLFERMG 922
            VCKLCR+KDPF+++ E EK+L+EMD  G+PRN ETFNVLI N CK+RKT++ALNLF RM 
Sbjct: 340  VCKLCREKDPFKIESEVEKVLVEMDTRGVPRNVETFNVLITNLCKMRKTQDALNLFNRMR 399

Query: 923  EWGCAPDSTTYLVLIRSLFQAARVGEGDEMIDRMKSAGFGDAVDKKAYYGFLKILCGIER 1102
            EWGC PD TT+LVLIRSL+QAARVGEGDEMIDRMKS+G+G+ +DKKAYYGFLKILCGIER
Sbjct: 400  EWGCDPDDTTFLVLIRSLYQAARVGEGDEMIDRMKSSGYGNKLDKKAYYGFLKILCGIER 459

Query: 1103 IDHAMEIFKKMKSDGCKPGVPTYDLLIGKLGAHGRGERANALFREAMKKELPVQPIVYKV 1282
            ++HA+ +F+ MK+DGCKPG+ TYDLLIGK     R ++ NALF EA++  +PV P  YKV
Sbjct: 460  LEHAVSVFEMMKADGCKPGIKTYDLLIGKWCTRNRVDKGNALFNEALRNGVPVAPKEYKV 519

Query: 1283 DPRFAXXXXXXXXXXXXRETLPEKMAXXXXXXXXXXXSFVKKPTKMMRRAF 1435
            D ++             RETLPEKMA           SFVKKP KMMRR F
Sbjct: 520  DEKY-MKKPKAVKKEKKRETLPEKMARKRRRLKQIRLSFVKKPKKMMRRPF 569