BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004879
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...   201   8e-50
emb|CBI27634.3| unnamed protein product [Vitis vinifera]              190   1e-46
ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containi...   186   2e-45
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...   183   1e-44
ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|2...   172   4e-41

>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score =  201 bits (510), Expect = 8e-50
 Identities = 106/180 (58%), Positives = 133/180 (73%)
 Frame = -1

Query: 542 ALELVEEMEARGFVVDLVTITSLLIGLHKQGRSDWAERLMKRVKDGSVLLNVLNWRAEME 363
           AL+LVEEMEARGFVVDLVTITSLLIG HKQGR DW ERLMK ++DG+++ NVLNW+A ME
Sbjct: 431 ALQLVEEMEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIRDGNLVPNVLNWKANME 490

Query: 362 ARMKGPQDRSKDLTPIFPSKGDFSEIMDFVNRSSVDKQVDNSSVTDGGESQVDGNXXXXX 183
           A MK PQ R KD TP+FPS+G+ SEIM  +  SS D ++D S  ++   +Q +       
Sbjct: 491 AYMKAPQSRRKDYTPMFPSEGNLSEIMSLI--SSADTEMDGSPGSEEDVAQHEDQ----- 543

Query: 182 XXXXXSPYLDQLADNVESTNHSQSLFLVSKGQRVEERGIESLDIDMVNTYLSIFLSKGKL 3
                SPY+DQLA  ++S + S  L  +S+GQRV+ +GI+S DIDMVNTYLSIFL+KGKL
Sbjct: 544 --WSSSPYMDQLASQLKSIDVSSQLLSLSRGQRVQAKGIDSFDIDMVNTYLSIFLAKGKL 601


>emb|CBI27634.3| unnamed protein product [Vitis vinifera]
          Length = 355

 Score =  190 bits (482), Expect = 1e-46
 Identities = 100/173 (57%), Positives = 126/173 (72%)
 Frame = -1

Query: 521 MEARGFVVDLVTITSLLIGLHKQGRSDWAERLMKRVKDGSVLLNVLNWRAEMEARMKGPQ 342
           MEARGFVVDLVTITSLLIG HKQGR DW ERLMK ++DG+++ NVLNW+A MEA MK PQ
Sbjct: 1   MEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIRDGNLVPNVLNWKANMEAYMKAPQ 60

Query: 341 DRSKDLTPIFPSKGDFSEIMDFVNRSSVDKQVDNSSVTDGGESQVDGNXXXXXXXXXXSP 162
            R KD TP+FPS+G+ SEIM  +  SS D ++D S  ++   +Q +            SP
Sbjct: 61  SRRKDYTPMFPSEGNLSEIMSLI--SSADTEMDGSPGSEEDVAQHEDQ-------WSSSP 111

Query: 161 YLDQLADNVESTNHSQSLFLVSKGQRVEERGIESLDIDMVNTYLSIFLSKGKL 3
           Y+DQLA  ++S + S  L  +S+GQRV+ +GI+S DIDMVNTYLSIFL+KGKL
Sbjct: 112 YMDQLASQLKSIDVSSQLLSLSRGQRVQAKGIDSFDIDMVNTYLSIFLAKGKL 164


>ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Glycine max]
          Length = 768

 Score =  186 bits (473), Expect = 2e-45
 Identities = 94/180 (52%), Positives = 129/180 (71%)
 Frame = -1

Query: 542 ALELVEEMEARGFVVDLVTITSLLIGLHKQGRSDWAERLMKRVKDGSVLLNVLNWRAEME 363
           AL+LVEEME+RGFVVDLVTITSLLI +H+ GR DW +RLMK +++G + L+VL W+A ME
Sbjct: 409 ALQLVEEMESRGFVVDLVTITSLLISIHRHGRWDWTDRLMKHIREGDLALSVLKWKAGME 468

Query: 362 ARMKGPQDRSKDLTPIFPSKGDFSEIMDFVNRSSVDKQVDNSSVTDGGESQVDGNXXXXX 183
           A MK P  + KD +P+FPSKGDF +I++F+  +      D +++ DG E     N     
Sbjct: 469 ASMKNPPGKKKDYSPLFPSKGDFIDIINFMTCAQ-----DTTNINDGEE-----NSCNEI 518

Query: 182 XXXXXSPYLDQLADNVESTNHSQSLFLVSKGQRVEERGIESLDIDMVNTYLSIFLSKGKL 3
                SP++D+LA+ V ST +S  +F  S+GQRV+E+G +S D+DMVNT+LSIFL+KGKL
Sbjct: 519 DEWSSSPHMDKLANQVSSTGYSSQMFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKL 578


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score =  183 bits (465), Expect = 1e-44
 Identities = 96/181 (53%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
 Frame = -1

Query: 542 ALELVEEMEARGFVVDLVTITSLLIGLHKQGRSDWAERLMKRVKDGSVLLNVLNWRAEME 363
           AL LVEEME RGFVVDLVTITSLLI  HKQGR DW E+LMK V+DG+++ NVLNW+A+ME
Sbjct: 459 ALSLVEEMEERGFVVDLVTITSLLIAFHKQGRWDWTEKLMKHVRDGNLVPNVLNWQADME 518

Query: 362 ARMKGPQDRSKDLTPIFPSKGDFSEIMDFVNRSSVDKQ-VDNSSVTDGGESQVDGNXXXX 186
           A +K P+ R KD TP+F S G  SEI++ +    +    +D+++V  G       N    
Sbjct: 519 ASLKNPRSRRKDYTPMFLSNGSLSEIINIIRYPDLKNHGLDDNAVEHG------DNISAE 572

Query: 185 XXXXXXSPYLDQLADNVESTNHSQSLFLVSKGQRVEERGIESLDIDMVNTYLSIFLSKGK 6
                 SPY+D LA+ V+ST++    F +++GQRV+ +G+ES DIDMVNT+LSIFL+KGK
Sbjct: 573 TDQWSSSPYMDHLANQVKSTDNCSQSFSLARGQRVQAKGVESFDIDMVNTFLSIFLAKGK 632

Query: 5   L 3
           L
Sbjct: 633 L 633


>ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|222844415|gb|EEE81962.1|
           predicted protein [Populus trichocarpa]
          Length = 640

 Score =  172 bits (435), Expect = 4e-41
 Identities = 95/180 (52%), Positives = 120/180 (66%)
 Frame = -1

Query: 542 ALELVEEMEARGFVVDLVTITSLLIGLHKQGRSDWAERLMKRVKDGSVLLNVLNWRAEME 363
           AL LVEEME RGFVVDL+TITSLLI  HKQGR D  ERLMK ++D ++L NVL WRA+ME
Sbjct: 279 ALHLVEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKHIRDVNLLPNVLKWRADME 338

Query: 362 ARMKGPQDRSKDLTPIFPSKGDFSEIMDFVNRSSVDKQVDNSSVTDGGESQVDGNXXXXX 183
           A +K P    +D TP+FPS G   EIM  +  SS   + D+ +  D   S  D +     
Sbjct: 339 ASLKNPPRSREDYTPMFPSTGGLQEIMSSI--SSPKSRSDDGATEDEKSSSADTD----- 391

Query: 182 XXXXXSPYLDQLADNVESTNHSQSLFLVSKGQRVEERGIESLDIDMVNTYLSIFLSKGKL 3
                SPY+D LA+  +ST+ S  LF +++GQRV+ +G  S DIDMVNT+LSIFL+KGKL
Sbjct: 392 -QWSSSPYMDHLANQAKSTDLSSQLFSLARGQRVQAKGAGSFDIDMVNTFLSIFLAKGKL 450