BLASTX nr result
ID: Coptis21_contig00004871
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00004871 (1202 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S... 488 e-135 gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot... 486 e-135 sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding pro... 486 e-135 emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 pr... 486 e-135 gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso... 485 e-135 >emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea] Length = 267 Score = 488 bits (1257), Expect = e-135 Identities = 236/257 (91%), Positives = 244/257 (94%), Gaps = 6/257 (2%) Frame = -1 Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954 P LAGKA+KL P+ASE+LGEGRVTMRKT GKP + WYGPDRVKYLGPFSGE+PSY Sbjct: 11 PSLAGKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSY 70 Query: 953 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA Sbjct: 71 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130 Query: 773 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+ GGPLGEVVDPL Sbjct: 131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190 Query: 593 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414 YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD Sbjct: 191 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250 Query: 413 PVNNNAWAFATNFVPGK 363 PVNNNAW+FATNFVPGK Sbjct: 251 PVNNNAWSFATNFVPGK 267 >gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya cathayensis] Length = 267 Score = 486 bits (1252), Expect = e-135 Identities = 234/257 (91%), Positives = 245/257 (95%), Gaps = 6/257 (2%) Frame = -1 Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954 P LAG+A+KLAPS+S+LLGEGRVTMRKT G+P + WYGPDRVKYLGPFSGE PSY Sbjct: 11 PSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSY 70 Query: 953 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774 LTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA Sbjct: 71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 130 Query: 773 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594 VWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR+ GGPLGEV DP+ Sbjct: 131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 190 Query: 593 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD Sbjct: 191 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250 Query: 413 PVNNNAWAFATNFVPGK 363 PVNNNAWA+ATNFVPGK Sbjct: 251 PVNNNAWAYATNFVPGK 267 >sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea] gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea] Length = 267 Score = 486 bits (1252), Expect = e-135 Identities = 235/257 (91%), Positives = 243/257 (94%), Gaps = 6/257 (2%) Frame = -1 Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954 P LAGKAVKL P+ASE++GEGR+TMRKT GKP + WYGPDRVKYLGPFSGESPSY Sbjct: 11 PSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSY 70 Query: 953 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774 LTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA Sbjct: 71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130 Query: 773 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+ GGPLGEVVDPL Sbjct: 131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190 Query: 593 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414 YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD Sbjct: 191 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250 Query: 413 PVNNNAWAFATNFVPGK 363 PVNNNAW FATNFVPGK Sbjct: 251 PVNNNAWNFATNFVPGK 267 >emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia oleracea] Length = 267 Score = 486 bits (1251), Expect = e-135 Identities = 235/257 (91%), Positives = 243/257 (94%), Gaps = 6/257 (2%) Frame = -1 Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954 P LAGKA+KL P+ASE+L EGRVTMRKT GKP + WYGPDRVKYLGPFSGE+PSY Sbjct: 11 PSLAGKAIKLGPTASEILSEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSY 70 Query: 953 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA Sbjct: 71 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130 Query: 773 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+ GGPLGEVVDPL Sbjct: 131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190 Query: 593 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414 YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD Sbjct: 191 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250 Query: 413 PVNNNAWAFATNFVPGK 363 PVNNNAW+FATNFVPGK Sbjct: 251 PVNNNAWSFATNFVPGK 267 >gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba] Length = 266 Score = 485 bits (1249), Expect = e-135 Identities = 235/257 (91%), Positives = 244/257 (94%), Gaps = 6/257 (2%) Frame = -1 Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954 P L GKAVKLAP+ASE+ GEGRV+MRKT GKP + WYGPDRVKYLGPFSGE+PSY Sbjct: 10 PSLVGKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSY 69 Query: 953 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774 LTGEF GDYGWDTAGLSADPETF+KNRELEVIH+RWAMLGALGCVFPELLARNGVKFGEA Sbjct: 70 LTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEA 129 Query: 773 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV+LMGAVEGYRV GGPLGEVVDPL Sbjct: 130 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPL 189 Query: 593 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414 YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD Sbjct: 190 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249 Query: 413 PVNNNAWAFATNFVPGK 363 PVNNNAWAFATNFVPGK Sbjct: 250 PVNNNAWAFATNFVPGK 266