BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004871
         (1202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S...   488   e-135
gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot...   486   e-135
sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding pro...   486   e-135
emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 pr...   486   e-135
gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso...   485   e-135

>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
          Length = 267

 Score =  488 bits (1257), Expect = e-135
 Identities = 236/257 (91%), Positives = 244/257 (94%), Gaps = 6/257 (2%)
 Frame = -1

Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954
            P LAGKA+KL P+ASE+LGEGRVTMRKT GKP      + WYGPDRVKYLGPFSGE+PSY
Sbjct: 11   PSLAGKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSY 70

Query: 953  LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774
            LTGEFPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct: 71   LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

Query: 773  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594
            VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+ GGPLGEVVDPL
Sbjct: 131  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190

Query: 593  YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414
            YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD
Sbjct: 191  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250

Query: 413  PVNNNAWAFATNFVPGK 363
            PVNNNAW+FATNFVPGK
Sbjct: 251  PVNNNAWSFATNFVPGK 267


>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
            cathayensis]
          Length = 267

 Score =  486 bits (1252), Expect = e-135
 Identities = 234/257 (91%), Positives = 245/257 (95%), Gaps = 6/257 (2%)
 Frame = -1

Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954
            P LAG+A+KLAPS+S+LLGEGRVTMRKT G+P      + WYGPDRVKYLGPFSGE PSY
Sbjct: 11   PSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSY 70

Query: 953  LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774
            LTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA
Sbjct: 71   LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 130

Query: 773  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594
            VWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR+ GGPLGEV DP+
Sbjct: 131  VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 190

Query: 593  YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414
            YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD
Sbjct: 191  YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250

Query: 413  PVNNNAWAFATNFVPGK 363
            PVNNNAWA+ATNFVPGK
Sbjct: 251  PVNNNAWAYATNFVPGK 267


>sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
            AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
            Precursor gi|14240|emb|CAA32526.1| chlorophyll a/b
            binding protein precursor [Spinacia oleracea]
            gi|193783447|emb|CAJ77389.3| major chlorophyll a/b
            binding protein LHCb1.3 [Spinacia oleracea]
          Length = 267

 Score =  486 bits (1252), Expect = e-135
 Identities = 235/257 (91%), Positives = 243/257 (94%), Gaps = 6/257 (2%)
 Frame = -1

Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954
            P LAGKAVKL P+ASE++GEGR+TMRKT GKP      + WYGPDRVKYLGPFSGESPSY
Sbjct: 11   PSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSY 70

Query: 953  LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774
            LTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct: 71   LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

Query: 773  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594
            VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+ GGPLGEVVDPL
Sbjct: 131  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190

Query: 593  YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414
            YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD
Sbjct: 191  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250

Query: 413  PVNNNAWAFATNFVPGK 363
            PVNNNAW FATNFVPGK
Sbjct: 251  PVNNNAWNFATNFVPGK 267


>emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
            oleracea]
          Length = 267

 Score =  486 bits (1251), Expect = e-135
 Identities = 235/257 (91%), Positives = 243/257 (94%), Gaps = 6/257 (2%)
 Frame = -1

Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954
            P LAGKA+KL P+ASE+L EGRVTMRKT GKP      + WYGPDRVKYLGPFSGE+PSY
Sbjct: 11   PSLAGKAIKLGPTASEILSEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSY 70

Query: 953  LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774
            LTGEFPGDYGWDTAGLSADPETFSKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA
Sbjct: 71   LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

Query: 773  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594
            VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+ GGPLGEVVDPL
Sbjct: 131  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190

Query: 593  YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414
            YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD
Sbjct: 191  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250

Query: 413  PVNNNAWAFATNFVPGK 363
            PVNNNAW+FATNFVPGK
Sbjct: 251  PVNNNAWSFATNFVPGK 267


>gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
          Length = 266

 Score =  485 bits (1249), Expect = e-135
 Identities = 235/257 (91%), Positives = 244/257 (94%), Gaps = 6/257 (2%)
 Frame = -1

Query: 1115 PFLAGKAVKLAPSASELLGEGRVTMRKTVGKP------TQWYGPDRVKYLGPFSGESPSY 954
            P L GKAVKLAP+ASE+ GEGRV+MRKT GKP      + WYGPDRVKYLGPFSGE+PSY
Sbjct: 10   PSLVGKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSY 69

Query: 953  LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEA 774
            LTGEF GDYGWDTAGLSADPETF+KNRELEVIH+RWAMLGALGCVFPELLARNGVKFGEA
Sbjct: 70   LTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEA 129

Query: 773  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVGGGPLGEVVDPL 594
            VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV+LMGAVEGYRV GGPLGEVVDPL
Sbjct: 130  VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPL 189

Query: 593  YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 414
            YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD
Sbjct: 190  YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249

Query: 413  PVNNNAWAFATNFVPGK 363
            PVNNNAWAFATNFVPGK
Sbjct: 250  PVNNNAWAFATNFVPGK 266