BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004868
         (2425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   520   e-145
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   511   e-142
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   511   e-142
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   504   e-140
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   503   e-140

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  520 bits (1340), Expect = e-145
 Identities = 261/321 (81%), Positives = 284/321 (88%)
 Frame = +2

Query: 1154 MEGAKNQRFPKIKIREMKDDYLKFELRETDTSMANALRRVMLAEVPTIAIDLVEIEVNST 1333
            MEGA  QRFP+IKIRE+KDDY KFELR+TD SMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1    MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 1334 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 1513
            VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQC+YCSVEFHL  +C  DQT DV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 1514 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 1693
            TS DL S+D TVVPVD    S SSGYD+SE RGIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121  TSKDLYSSDHTVVPVDF---SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 1694 KWSPAATVTFMYEPEIRINXXXXXXXXXXXKNGWIESSPTKVFGIDPNTHQVMVVDAEAY 1873
            KWSPAATVTFMYEP+I IN           K  W+ESSPTKVF IDPNT QV+VVD EAY
Sbjct: 178  KWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAY 237

Query: 1874 TYDEEVIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASQLVINAIDVLKQKLDAVRL 2053
            TYDEEVIKKAE+MGKPGLV I+AKEDSFIFTVESTGA+KASQLV+NAI++LKQKLDAVRL
Sbjct: 238  TYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRL 297

Query: 2054 SDDTVEADDQFGELGSHMRGG 2116
            S+DTVEADDQFGELG+HMRGG
Sbjct: 298  SEDTVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  511 bits (1317), Expect = e-142
 Identities = 258/321 (80%), Positives = 282/321 (87%)
 Frame = +2

Query: 1154 MEGAKNQRFPKIKIREMKDDYLKFELRETDTSMANALRRVMLAEVPTIAIDLVEIEVNST 1333
            MEG   QRFPKIKIRE+KDDY KFELRETD SMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 1334 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 1513
            VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+T DV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 1514 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 1693
            TS DL S+D TVVPVD    S SSGYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121  TSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 1694 KWSPAATVTFMYEPEIRINXXXXXXXXXXXKNGWIESSPTKVFGIDPNTHQVMVVDAEAY 1873
            KWSPAATVTFMYEPEI IN           K  W+ESSPTKVF ID ++ QV+V DAEAY
Sbjct: 178  KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 1874 TYDEEVIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASQLVINAIDVLKQKLDAVRL 2053
            TYD+EV+KKAEAMGKPGLVEI AKEDSFIFTVESTGA+KASQLV+NAIDVLKQKLDAVRL
Sbjct: 238  TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRL 297

Query: 2054 SDDTVEADDQFGELGSHMRGG 2116
            S+DTVEADDQFGELG+HMRGG
Sbjct: 298  SEDTVEADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  511 bits (1315), Expect = e-142
 Identities = 258/321 (80%), Positives = 282/321 (87%)
 Frame = +2

Query: 1154 MEGAKNQRFPKIKIREMKDDYLKFELRETDTSMANALRRVMLAEVPTIAIDLVEIEVNST 1333
            MEG   QRFPKIKIRE+KDDY KFELRETD SMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 1334 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 1513
            VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+T DV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 1514 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 1693
            TS DL S+D TVVPVD    S SSGYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121  TSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 1694 KWSPAATVTFMYEPEIRINXXXXXXXXXXXKNGWIESSPTKVFGIDPNTHQVMVVDAEAY 1873
            KWSPAATVTFMYEPEI IN           K  W+ESSPTKVF ID ++ QV+V DAEAY
Sbjct: 178  KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 1874 TYDEEVIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASQLVINAIDVLKQKLDAVRL 2053
            TYD+EV+KKAEAMGKPGLVEI AKEDSFIFTVESTGA+KASQLV+NAIDVLKQKLDAVRL
Sbjct: 238  TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRL 297

Query: 2054 SDDTVEADDQFGELGSHMRGG 2116
            S+DTVEADDQFGELG+HMRGG
Sbjct: 298  SEDTVEADDQFGELGAHMRGG 318


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi|297329735|gb|EFH60154.1|
            RBP36A [Arabidopsis lyrata subsp. lyrata]
          Length = 319

 Score =  504 bits (1298), Expect = e-140
 Identities = 258/321 (80%), Positives = 279/321 (86%)
 Frame = +2

Query: 1154 MEGAKNQRFPKIKIREMKDDYLKFELRETDTSMANALRRVMLAEVPTIAIDLVEIEVNST 1333
            M+GA  QRFPKI IRE+KDDY KFELRETD SMANALRRVM++EVPT+AIDLVEIEVNS+
Sbjct: 1    MDGATYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1334 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 1513
            VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF LS +C  DQT DV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDV 120

Query: 1514 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 1693
            TS DL S DPTV PVD    SS+S  D+SE +GIIIVKLRRGQEL+LRAIARKGIGKDHA
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSAS--DSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHA 178

Query: 1694 KWSPAATVTFMYEPEIRINXXXXXXXXXXXKNGWIESSPTKVFGIDPNTHQVMVVDAEAY 1873
            KWSPAATVTFMYEP+I IN           K   IESSPTKVFGIDP T QV+VVD EAY
Sbjct: 179  KWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAY 238

Query: 1874 TYDEEVIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASQLVINAIDVLKQKLDAVRL 2053
            TYDEEVIKKAEAMGKPGL+EI  K+DSFIFTVESTGAVKASQLV+NAID+LKQKLDAVRL
Sbjct: 239  TYDEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRL 298

Query: 2054 SDDTVEADDQFGELGSHMRGG 2116
            SDDTVEADDQFGELG+HMRGG
Sbjct: 299  SDDTVEADDQFGELGAHMRGG 319


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis thaliana]
            gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName:
            Full=DNA-directed RNA polymerase II subunit RPB3-A;
            Short=RNA polymerase II subunit 3-A; Short=RNA polymerase
            II subunit B3-A; AltName: Full=DNA-directed RNA
            polymerase II 36 kDa polypeptide A
            gi|514318|gb|AAB03741.1| RNA polymerase II third largest
            subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
            DNA-directed RNA polymerase II, third largest subunit
            [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
            putative DNA-directed RNA polymerase II third largest
            subunit [Arabidopsis thaliana] gi|20465883|gb|AAM20046.1|
            putative DNA-directed RNA polymerase II [Arabidopsis
            thaliana] gi|330251306|gb|AEC06400.1| DNA-directed RNA
            polymerase II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  503 bits (1295), Expect = e-140
 Identities = 258/321 (80%), Positives = 280/321 (87%)
 Frame = +2

Query: 1154 MEGAKNQRFPKIKIREMKDDYLKFELRETDTSMANALRRVMLAEVPTIAIDLVEIEVNST 1333
            M+GA  QRFPKIKIRE+KDDY KFELRETD SMANALRRVM++EVPT+AIDLVEIEVNS+
Sbjct: 1    MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1334 VLNDEFISHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDV 1513
            VLNDEFI+HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF LS +C  DQT DV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 1514 TSADLQSTDPTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 1693
            TS DL S DPTV PVD    SS S  D+SE++GIIIVKLRRGQEL+LRAIARKGIGKDHA
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSVS--DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHA 178

Query: 1694 KWSPAATVTFMYEPEIRINXXXXXXXXXXXKNGWIESSPTKVFGIDPNTHQVMVVDAEAY 1873
            KWSPAATVTFMYEP+I IN           K   IESSPTKVFG+DP T QV+VVD EAY
Sbjct: 179  KWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAY 238

Query: 1874 TYDEEVIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASQLVINAIDVLKQKLDAVRL 2053
            TYDEEVIKKAEAMGKPGL+EI  K+DSFIFTVESTGAVKASQLV+NAID+LKQKLDAVRL
Sbjct: 239  TYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRL 298

Query: 2054 SDDTVEADDQFGELGSHMRGG 2116
            SDDTVEADDQFGELG+HMRGG
Sbjct: 299  SDDTVEADDQFGELGAHMRGG 319