BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004747
         (1472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531375.1| RNA and export factor binding protein, putat...   257   5e-66
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro...   256   1e-65
ref|XP_004149042.1| PREDICTED: RNA and export factor-binding pro...   248   3e-63
ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and expo...   246   8e-63
ref|XP_003539690.1| PREDICTED: RNA and export factor-binding pro...   241   4e-61

>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223529035|gb|EEF31023.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 247

 Score =  257 bits (657), Expect = 5e-66
 Identities = 151/269 (56%), Positives = 163/269 (60%)
 Frame = +3

Query: 132 MTDGLDMSLEDIIKKNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTT 311
           M+  LDMSL+DIIK NKK                             TRRF NRG+NR  
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRSSGPGP------------TRRFNNRGTNRAA 48

Query: 312 PYSMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVS 491
           PY+  K   APE+ WQHDMF D                     IETGTKLYISNL+YGVS
Sbjct: 49  PYAAAK---APESTWQHDMFTDQGGMGMFQGQGGGGSRASG--IETGTKLYISNLEYGVS 103

Query: 492 NEDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKI 671
           NEDIKELFSEVGDLKRYS+HYDRSGRSKGTAEVVFSRR+DA AAVKRYNNVQLDGKPMKI
Sbjct: 104 NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKI 163

Query: 672 EIVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXX 851
           EIVGTNI TP A P A NG FGN N APRGGQGR                          
Sbjct: 164 EIVGTNIATPAATP-AANGNFGNSNGAPRGGQGR----GGTMRRPRGASSDGRGFGRGRG 218

Query: 852 XXXXXSDPVSAKDLDAELDKYHSEAMQIN 938
                 + VSA+DLDA+L+KYHSEAMQ N
Sbjct: 219 RGRGRGEKVSAEDLDADLEKYHSEAMQTN 247


>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
           gi|297746115|emb|CBI16171.3| unnamed protein product
           [Vitis vinifera]
          Length = 243

 Score =  256 bits (653), Expect = 1e-65
 Identities = 148/269 (55%), Positives = 162/269 (60%)
 Frame = +3

Query: 132 MTDGLDMSLEDIIKKNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTT 311
           M++ LDMSL+D+IK NK+                              RR  NRG+NR T
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGP-----------ARRLPNRGANRIT 49

Query: 312 PYSMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVS 491
           PYS+ K   APET WQHDMF D                     IETGTKLYISNLDYGVS
Sbjct: 50  PYSVSK---APETTWQHDMFADQAAAYPAQAGRTSA-------IETGTKLYISNLDYGVS 99

Query: 492 NEDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKI 671
           NEDIKELFSEVGDLKRYS+HYDRSGRSKGTAEVVFSRR DA AAVKRYNNVQLDGKPMKI
Sbjct: 100 NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKI 159

Query: 672 EIVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXX 851
           EIVGTNI TP A+P   NG FGN N   R  QGRV +                       
Sbjct: 160 EIVGTNIATPAAVPPVTNGTFGNSNGGLRSAQGRVGSQG-----RPRGGSGGRGFGRGRG 214

Query: 852 XXXXXSDPVSAKDLDAELDKYHSEAMQIN 938
                 + VSA+DLDA+L+KYHSEAMQIN
Sbjct: 215 RGRGRGEKVSAEDLDADLEKYHSEAMQIN 243


>ref|XP_004149042.1| PREDICTED: RNA and export factor-binding protein 2-like [Cucumis
           sativus]
          Length = 237

 Score =  248 bits (633), Expect = 3e-63
 Identities = 143/269 (53%), Positives = 164/269 (60%)
 Frame = +3

Query: 132 MTDGLDMSLEDIIKKNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTT 311
           M + LDMSL+DIIK NKK                             +RRF+NRG NR T
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGP-----------SRRFRNRGLNRAT 49

Query: 312 PYSMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVS 491
           PYS  K   APETAW HDMF+D                     IETGTKLY+SNLDYGVS
Sbjct: 50  PYSTSK---APETAWSHDMFVD-------HGAAYPSHPPRASAIETGTKLYVSNLDYGVS 99

Query: 492 NEDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKI 671
           NEDIKELFSEVGD+KRYS++YD+SGRSKGTAE+VFSR++DA AA+KRYNNVQLDGKPMK+
Sbjct: 100 NEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKL 159

Query: 672 EIVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXX 851
           EIVGTNIVTP A+P   N  FGNPN  PRGG+   R                        
Sbjct: 160 EIVGTNIVTP-AVPAPSNASFGNPNGFPRGGRAMGRNRGGGRGRSGSGSGSGRGH----- 213

Query: 852 XXXXXSDPVSAKDLDAELDKYHSEAMQIN 938
                 + +SA+DLDA+LDKYH EAMQIN
Sbjct: 214 -----GEKLSAEDLDADLDKYHEEAMQIN 237


>ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and export factor-binding
           protein 2-like [Cucumis sativus]
          Length = 248

 Score =  246 bits (629), Expect = 8e-63
 Identities = 144/271 (53%), Positives = 165/271 (60%), Gaps = 2/271 (0%)
 Frame = +3

Query: 132 MTDGLDMSLEDIIKKNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTT 311
           M + LDMSL+DIIK NKK                             +RRF+NRG NR T
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGP-----------SRRFRNRGLNRAT 49

Query: 312 PYSMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVS 491
           PYS  K   APETAW HDMF+D                     IETGTKLY+SNLDYGVS
Sbjct: 50  PYSTSK---APETAWSHDMFVD-------HGAAYPSHPPRASAIETGTKLYVSNLDYGVS 99

Query: 492 NEDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKI 671
           NEDIKELFSEVGD+KRYS++YD+SGRSKGTAE+ FSR++DA AA+KRYNNVQLDGKPMK+
Sbjct: 100 NEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIXFSRQADALAAIKRYNNVQLDGKPMKL 159

Query: 672 EIVGTNIVTPGALPIAPNGVFGNPNFAPRGGQ--GRVRATSXXXXXXXXXXXXXXXXXXX 845
           EIVGTNIVTP A+P   N  FGNPN  PRGG+  GR R                      
Sbjct: 160 EIVGTNIVTP-AVPAPSNASFGNPNGFPRGGRAMGRNRG-GGRGRGPGRGRGRGRGSGSG 217

Query: 846 XXXXXXXSDPVSAKDLDAELDKYHSEAMQIN 938
                   + +SA+DLDA+LDKYH EAMQIN
Sbjct: 218 SGSGRGHGEKLSAEDLDADLDKYHEEAMQIN 248


>ref|XP_003539690.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine
           max]
          Length = 247

 Score =  241 bits (615), Expect = 4e-61
 Identities = 140/269 (52%), Positives = 159/269 (59%)
 Frame = +3

Query: 132 MTDGLDMSLEDIIKKNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTT 311
           M+  +DMSL+DIIK NKK                             TRR  NR +NR  
Sbjct: 1   MSAAMDMSLDDIIKNNKKSGSGSSRGRTRPSGSGP------------TRRLPNRAANRAA 48

Query: 312 PYSMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVS 491
           PY+   P  APE  WQHD++ D                     IETGTKLYISNLDYGVS
Sbjct: 49  PYA---PAKAPEATWQHDLYADQHVAAAGYPAQGGRAAS----IETGTKLYISNLDYGVS 101

Query: 492 NEDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKI 671
           N+DIKELF+EVGDLKR++VHYDRSGRSKGTAEVVFSRR+DA +AVKRYNNVQLDGKPMKI
Sbjct: 102 NDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKI 161

Query: 672 EIVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXX 851
           EIVGTNI TPG  P APNG  GN N  PR GQG  R  +                     
Sbjct: 162 EIVGTNISTPGVAP-APNGAIGNFNGVPRSGQG--RGGALRRPGGRGQGIRRDRGRGRGR 218

Query: 852 XXXXXSDPVSAKDLDAELDKYHSEAMQIN 938
                 + VSA DLDA+L+KYH+EAMQ+N
Sbjct: 219 GGGGRGEKVSADDLDADLEKYHAEAMQLN 247