BLASTX nr result
ID: Coptis21_contig00004705
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00004705 (4068 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho... 1628 0.0 ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1619 0.0 ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho... 1609 0.0 ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1603 0.0 gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1546 0.0 >ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa] Length = 1200 Score = 1628 bits (4215), Expect = 0.0 Identities = 778/1199 (64%), Positives = 962/1199 (80%), Gaps = 5/1199 (0%) Frame = +1 Query: 46 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 225 E E KE +VTQVS GGF V AK+L ++L+ IG ++WRCRLK SWTPPES PNF++ Sbjct: 2 EAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60 Query: 226 QNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHS 405 +I+ +++T+DY +V PHAFVHFA P SAT A NA+GRCELF N L V+LGP+ F Sbjct: 61 TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120 Query: 406 NQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAF 585 NQ+RR T PFK S+V EIG L S +EF GW+GP SGVDF+VDPFDGTCK F++ TAF Sbjct: 121 NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180 Query: 586 SFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDS 765 S KST++ AV+KC+FK+EF + +I E+ QY S L++L+QL+SAP V+YRTADDDI Sbjct: 181 SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240 Query: 766 VPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPC---R 936 VPFDLLDD+DPWIRTTDFT G IGR +SY +S+ PR G KL KAVKY +ERRV Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300 Query: 937 SFLQRLKVLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFEL 1113 + +R+++L+EP +P + FFC+ + I+FEV+++VNAVMHKGI NQ QLS FF+L Sbjct: 301 NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360 Query: 1114 LRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLI 1293 LR+Q EVN+ AL H+ YRRPVF+AY+RLK VQ+WLLKNP K + L +E+ RL+ Sbjct: 361 LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420 Query: 1294 ITPTRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDIT 1473 ITPT+AYCLPPEVELSNRVLRKYK+ ADRFLRVTFMDEG ++N+NVL+YYVAPIVRDIT Sbjct: 421 ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480 Query: 1474 SNSFPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKK 1653 SNSFPQKT +FKRV+++L+EGFYLCGR+YSFLAFS+NQLRD+SAWFF+E++ I+V D+K Sbjct: 481 SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540 Query: 1654 WMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDL 1833 WMGKF N+N+AKCAARMGQCFSSTY T++VP +EVN D PDIERN +VFSDGIGI+TPDL Sbjct: 541 WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600 Query: 1834 AAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVI 2010 A EVAEKL+L + P AYQIRYAGCKGV+A WPGK DG+RL LRPSMNKF+S+H +E+ Sbjct: 601 AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660 Query: 2011 TWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDE 2190 +WTRFQPGFLNRQ++TLLS+L VP+ VF K+Q++MV L+QM N D+A DV+ +SC D+ Sbjct: 661 SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720 Query: 2191 GNTAALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLE 2370 GN AA+M+S GFKP EPHL+G+++C+RA+QL DL +K RIFV S RWLMGCLDELG+LE Sbjct: 721 GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780 Query: 2371 QGQCFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIP 2550 QGQCFIQVS+ SLE CF+KHG K S NL+VIKGTVV+AKNPCLHPGD+RVLEAVD+P Sbjct: 781 QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840 Query: 2551 ALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAK 2730 LHHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW M Y AEAK Sbjct: 841 GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900 Query: 2731 TLPRAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDS 2910 L R VNHQDIIEFF++NMVN+NLG ICNAHVVHAD SEYGA D+ C+ LAELAATAVD Sbjct: 901 LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960 Query: 2911 PKTGKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLESPYD 3090 PKTGK V MP L+PK+YPDFMGKE+++SYKS+KILG LYR+IK+A++E+V +S E Sbjct: 961 PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020 Query: 3091 PEGIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYN 3270 P IPYD+DLE+ ++D I +AW KCSYDGQLN LL QYKV E+EVV+GH+WSMP+Y+ Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080 Query: 3271 NKKQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQ 3450 ++KQ ELK++LKH+Y SLKKEF+ +FE ++ + + + +K ++YEQKASAWYQV YHP Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140 Query: 3451 WVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSYLA 3627 WVKKSLEL+ + D LSFAWI A+YL RIKIR T N+++ +P NSL YLA Sbjct: 1141 WVKKSLELQ--DPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLA 1197 >ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera] Length = 1197 Score = 1619 bits (4192), Expect = 0.0 Identities = 796/1203 (66%), Positives = 964/1203 (80%), Gaps = 4/1203 (0%) Frame = +1 Query: 28 MESVGSENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPES 207 MES GSE K+M+VTQ+S GGF + V A EL +LED IG + RCRLK S TPPES Sbjct: 1 MESEGSE-----KDMVVTQISIGGFDQYVTATELTYYLEDTIGS-VDRCRLKTSSTPPES 54 Query: 208 LPNFQVQNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGP 387 P+F++ + + +++T+DY+KVEPHAFVHF SP +AT A +AAG+ ELF + PL V+LGP Sbjct: 55 YPDFEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGP 114 Query: 388 EGSFHSNQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILF 567 E FH NQ+RR T PFKF +V EIG L S +E+ GW+GP+SGVDF+VDPFDGTCK LF Sbjct: 115 ETPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLF 174 Query: 568 TKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTAD 747 TK+TAFSFK K AV+KCNFK+EF + EI EV+Q +++S+LI+L+QLSS+P V+YRTAD Sbjct: 175 TKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTAD 234 Query: 748 DDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRV 927 DDI ++VPFDLLDD+DPWIRTTDFT G IGR NSY IS+ PR G KL KA+ Y RRV Sbjct: 235 DDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRV 294 Query: 928 PCR--SFLQRLKVLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSE 1098 S +L+V +EP +P + FFC+ + I F V+++VNAVMHKGIINQ QLS+ Sbjct: 295 NVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSD 354 Query: 1099 KFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIE 1278 KFF+LLRSQ K++NI AL H+ YR PVFDAY+RLK+V KWLLKNPK +K + LD +E Sbjct: 355 KFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVE 414 Query: 1279 VHRLIITPTRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPI 1458 V RL+ITP++AYCLPPEVELSNRVLR YKE +DRFLRVTFMDEG +N NVL+YYVAPI Sbjct: 415 VRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPI 474 Query: 1459 VRDITSNSFPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINV 1638 V+ ITSNSFPQKT VFKRVKT+L++GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKK +V Sbjct: 475 VKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSV 534 Query: 1639 TDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGI 1818 IK WMGKF N+NVAKCAARMGQCFSSTY TV+VPS EV + PDI+RN + FSDGIG Sbjct: 535 RAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGK 593 Query: 1819 LTPDLAAEVAEKLQLTETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNI 1998 + PDLA EVAEKL+L TPSAYQIRYAGCKGV+A WP +DGIRL RPSMNKF S H I Sbjct: 594 IVPDLAMEVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTI 653 Query: 1999 IEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISS 2178 +E+ +WTRFQPGFLNRQ+VTLLS+L VP+++F K+Q+SM+ L+QMLT+ D+A DV+I+S Sbjct: 654 LEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIAS 713 Query: 2179 CGDEGNTAALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDEL 2358 C ++GNTAA+M+S GFKPQ EPHL+G+++CIRA+Q L +KARIFV S RWLMGCLDEL Sbjct: 714 CAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDEL 773 Query: 2359 GLLEQGQCFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEA 2538 G+LEQGQCFIQVSSPSLE+CF+KHG + S NLKVIKG V +AKNPCLHPGD+R+LEA Sbjct: 774 GVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCLHPGDVRILEA 832 Query: 2539 VDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSP 2718 VD P L HLVDCLVFPQ GDRPHSNEASGSDLDGDLYFVTW+ LIPPS++SWP M Y Sbjct: 833 VDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDS 892 Query: 2719 AEAKTLPRAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAAT 2898 AEAK L R V DII+FF++NMVNENLG ICNAHVVHAD+SEYGA+DE C+ LAE AAT Sbjct: 893 AEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAAT 952 Query: 2899 AVDSPKTGKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLE 3078 AVD PKTGK V +P L+PK+YPDFMGKE+F++Y+S KILG +YR+IK+A+ E+V S E Sbjct: 953 AVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSE 1012 Query: 3079 SPYDPEGIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSM 3258 + + +P+D DL I S D I +AW HKCSYDGQLN LLGQYKV E+EVV+GHVWSM Sbjct: 1013 QIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSM 1072 Query: 3259 PRYNNKKQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVT 3438 P+Y ++KQ EL E+LKHAY SLKKEF+ +FE +N D + D+K ++YEQKASAWYQVT Sbjct: 1073 PKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVT 1132 Query: 3439 YHPQWVKKSLELRRIEE-DDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLV 3615 YHP WVKKSLEL+ +E +RV LSFAWI A+YL RIKIR+ GT N+++ +P NSL Sbjct: 1133 YHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLA 1190 Query: 3616 SYL 3624 +L Sbjct: 1191 RFL 1193 >ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa] Length = 1198 Score = 1609 bits (4166), Expect = 0.0 Identities = 775/1197 (64%), Positives = 950/1197 (79%), Gaps = 3/1197 (0%) Frame = +1 Query: 46 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 225 E E KE +VTQVS GGF V AK+L ++LE EIG ++WRCRLK SWTPPES PNF++ Sbjct: 2 ETEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60 Query: 226 QNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHS 405 +I+ + +T+DY +VEPHAFVHFA P SAT A +AA RCELF N L +LGPE F Sbjct: 61 TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120 Query: 406 NQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAF 585 NQ+RR T PFK S V EIGTL S +EF GW+GP +GVDF+VDPFDGTC+ F++ TAF Sbjct: 121 NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180 Query: 586 SFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDS 765 SFKSTA+ AV+KC+FK+EF + +I E+KQY S L++L+QL+SAPRV+YRTADDDI S Sbjct: 181 SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240 Query: 766 VPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPCRSFL 945 VPFDLLDD+DPWIRTTDFT G IGR +SY +S+ PR GPKL KAV + +ERRV Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300 Query: 946 QRLKVLEEPSADVP-PNSFFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFELLRS 1122 + +++ +EP +P + FFC+ + I+F+V+++VNAVMHKGI NQ QLS FF+LLR+ Sbjct: 301 RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360 Query: 1123 QSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLIITP 1302 Q EVN+ AL H+Y YRRPVFDAYK+LK+ Q+WLLKNPK K + LD E+ RL+ITP Sbjct: 361 QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420 Query: 1303 TRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDITSNS 1482 T+AYCLPPEVELSNRVLRKYK+ ADRFLRVTFMDEG +N+N L+Y+ APIVR ITS S Sbjct: 421 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480 Query: 1483 FPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKKWMG 1662 FPQKT +FKRV+++L+EGFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ INV IK WMG Sbjct: 481 FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540 Query: 1663 KFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAE 1842 KF NKN+AKCAARMGQCFSSTY T++VP +EVN D PDI+RN + FSDGIG++TPDLA E Sbjct: 541 KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600 Query: 1843 VAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWT 2019 VAEKL+ + P AYQIRYAGCKGV+A WP + DGIRL LR SMNKF+S+H I+E+ +WT Sbjct: 601 VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660 Query: 2020 RFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNT 2199 RFQPGFLNRQ++TLLS+L VP+ VF K+Q+ MV L+QML + D+A DV+ +SC ++GN Sbjct: 661 RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720 Query: 2200 AALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQ 2379 AA+M+S GFKPQ EPHL+G+++C+RA+QL L +KARIFV S RWLMGCLDELG+LEQGQ Sbjct: 721 AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780 Query: 2380 CFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALH 2559 CFIQVS+ LE+CFVKHG K S NL+V+KGTVV+AKNPCLHPGDIR+LEAVD P LH Sbjct: 781 CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840 Query: 2560 HLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKTLP 2739 HL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW M Y AEAK L Sbjct: 841 HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900 Query: 2740 RAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKT 2919 R VNHQDI+EFF++NM NENLG ICNAHVV AD SEYGA+DEKC+ LAELAATAVD PKT Sbjct: 901 RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960 Query: 2920 GKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAF-EEEVLSSLESPYDPE 3096 GK V MP L+PK+YPDFMGKE+ +SYKSKKILG LYR+IK+A+ +++V +S E + Sbjct: 961 GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020 Query: 3097 GIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNK 3276 IPYD DLE+ + D I +AW KCSYDGQLN LL QYKV E+EVV+GHVWSMP+ +++ Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080 Query: 3277 KQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWV 3456 KQ +LKE+LKH+Y LK+EF+ VFE ++ D + D+K +YE+KASAWYQVTYHP W+ Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWI 1140 Query: 3457 KKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSYLA 3627 +KSLEL+ + D + LSFAWI A+YL RIKIR N+++ +P NSL YLA Sbjct: 1141 QKSLELQ--DSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLA 1195 >ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis] gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis] Length = 1203 Score = 1603 bits (4152), Expect = 0.0 Identities = 777/1202 (64%), Positives = 945/1202 (78%), Gaps = 8/1202 (0%) Frame = +1 Query: 46 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 225 E ++ KE +VTQVSFGGF KDV A++L +L++EIG +WRCRLK SWTPPES PNF++ Sbjct: 2 ETKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIG-QVWRCRLKTSWTPPESYPNFEI 60 Query: 226 QNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHS 405 + + +Q+ D Y +VEPHAFVHFASP+SAT AKNAAG CELF+N P+ V+LGPE FH Sbjct: 61 TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120 Query: 406 NQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAF 585 NQ+RR T PFK S+V EIGTL S +EFL GW+GP SGVDF+VDPFDG CK FT++TAF Sbjct: 121 NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180 Query: 586 SFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDS 765 SFK T + AV++C+FKLEF + +I E+KQY + S L++L+QL+SAP V+YRTADDDI Sbjct: 181 SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240 Query: 766 VPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPCRSFL 945 VPFDLLDD+DPWIRTTDFTP G IGR NSY +S+ PR G KL +A+ + ERRV Sbjct: 241 VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300 Query: 946 QRLKVLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFELLRS 1122 + L V EP ++P + FFC+ + + F ++++VNAVMHKGI NQ QLS+ FF+LLR+ Sbjct: 301 RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360 Query: 1123 QSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLIITP 1302 Q +VNI AL H+ Y+ PVFDA+KRLK VQ+WLLKNPK + S+ LD +E+ RL ITP Sbjct: 361 QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420 Query: 1303 TRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDITSNS 1482 TRAYCLPPEVELSNRVLR+YK+ AD+FLRVTFMDEG +N N L+YY APIVRDITSNS Sbjct: 421 TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480 Query: 1483 FPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKKWMG 1662 F QKT +FKRVK++L++GFYLCGRKYSFLAFSSNQLRDRSAWFFAED K +V+ I+ WMG Sbjct: 481 FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540 Query: 1663 KFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAE 1842 KF N+N+AKCAARMGQCFSSTY TV+VPS E D PDIERN+++FSDGIG++TPDLA E Sbjct: 541 KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600 Query: 1843 VAEKLQL-TETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWT 2019 VAEKL+L P AYQIRYAGCKGV+A WP DGIRL LR SMNKF S+H +E+ +WT Sbjct: 601 VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660 Query: 2020 RFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNT 2199 RFQPGFLNRQ++TLLS+L VP+E+F K+Q MV L+QM + D+A DV+ +SC ++GNT Sbjct: 661 RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720 Query: 2200 AALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQ 2379 AA+M+S GF P+ EPHL G+++CIRA+QL L +K RIFV S RWLMGCLDELG+LE GQ Sbjct: 721 AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780 Query: 2380 CFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALH 2559 CFIQVS+PSLE CF KHG + S L+V+KGTVV+AKNPCLHPGDIR+LEAVD P LH Sbjct: 781 CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840 Query: 2560 HLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKTLP 2739 HL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW M Y AEAK L Sbjct: 841 HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900 Query: 2740 RAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKT 2919 R VNHQDII+FF++NMVNENLG ICNAHVVHAD SEYGA+DE CI+LAELAATAVD PKT Sbjct: 901 RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960 Query: 2920 GKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAF------EEEVLSSLES 3081 GK V MP L+PKLYPDFMGKED++SY S KILG LYR++K+ + +++ +S E Sbjct: 961 GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020 Query: 3082 PYDPEGIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMP 3261 IPYD DLE++ S+D I +AW KCSYDGQL LL QYKV E+EVV+GH+WSMP Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080 Query: 3262 RYNNKKQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTY 3441 + N++KQ ELKE+LK +Y SLKKEF+ VFE ++ D + D+K +YEQKASAWYQV Y Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140 Query: 3442 HPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSY 3621 HP+WV KS+EL+ E D + LSFAWI A+YL RIKIR G D ++T +P NSLV Y Sbjct: 1141 HPKWVNKSMELQ--EPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKY 1198 Query: 3622 LA 3627 LA Sbjct: 1199 LA 1200 >gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 1546 bits (4004), Expect = 0.0 Identities = 764/1194 (63%), Positives = 931/1194 (77%), Gaps = 4/1194 (0%) Frame = +1 Query: 64 KEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVQNISDV 243 KE++VTQ+S GGF DV AK L+++LE+++G +WRCRLK S TPP+S P + + + V Sbjct: 8 KELVVTQISVGGFDNDVNAKMLSEYLEEQVG-QVWRCRLKISSTPPDSYPTYDI-DAEKV 65 Query: 244 QKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHSNQKRRN 423 Q+ ++YEKV PHAFVHFAS SA A AAG EL + PL+V+LGPE + NQ+RR Sbjct: 66 QRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125 Query: 424 TDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAFSFKSTA 603 T PFKFS+V E+G L S ++F+ GW+GP +GVDF+VDPF+GTCKILFTK+TAFSF+ A Sbjct: 126 TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185 Query: 604 KQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVPFDLL 783 + A++KCNFK+EF + EI E+K+ K+ ++L++L QL+S+P VFYRTADDDI +SV FDLL Sbjct: 186 RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245 Query: 784 DDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPCRSFLQR--LK 957 DD+D WIRTTD T G IGR N+Y IS+ PR GP KA+ YF RRVP R L+ Sbjct: 246 DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305 Query: 958 VLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFELLRSQSKE 1134 V +EP V + FFC + ISF V+++VNAV+HKGI+NQ Q++ +FF LLRS +E Sbjct: 306 VKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEE 364 Query: 1135 VNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLIITPTRAY 1314 VN AL HM+ Y+ PV DA ++L +QKWLLKNPK + + LD +EV RL+ITPT+AY Sbjct: 365 VNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAY 424 Query: 1315 CLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDITSNSFPQK 1494 CLPP VELSNRVLR YK ADRFLRVTFMDEG LN NVL+YY A IVR+ITSNS PQ+ Sbjct: 425 CLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR 484 Query: 1495 TAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKKWMGKFKN 1674 TA+F+RVK++LS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAED KI V I WMG+F N Sbjct: 485 TAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN 544 Query: 1675 KNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAEVAEK 1854 +NVAKCAARMGQCFSSTY TV+VPS EVN + PDIERN +VFSDGIG+++ DLA EVAEK Sbjct: 545 RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEK 604 Query: 1855 LQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWTRFQP 2031 L L+ PSAYQIRYAGCKGV+A WP K+DGIRL LRPSM KF+S+H I+E+ +WTRFQP Sbjct: 605 LHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQP 664 Query: 2032 GFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNTAALM 2211 GFLNRQ+VTLLSSL V + +F ++Q M+ LD+ML + D+A DVI +SC + GNTAALM Sbjct: 665 GFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALM 724 Query: 2212 ISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQCFIQ 2391 +S GFKPQ EPHL+G++S IRASQLGDL +KARIFV S RWLMGCLDELG LEQGQCFIQ Sbjct: 725 LSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQ 784 Query: 2392 VSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALHHLVD 2571 VSSPSLE+CFVKHG K S NL+V+KG VV+AKNPCLHPGD+R+LEAVD+P+L HL D Sbjct: 785 VSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYD 844 Query: 2572 CLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKTLPRAVN 2751 CLVFPQ GDRPHSNEASGSDLDGDLYFVTWD NLIPPS++SW M+Y PAE K L R VN Sbjct: 845 CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVN 904 Query: 2752 HQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKTGKFV 2931 H DII+FFS+NMV E+LG ICNAHVVHAD SE+GA+DEKC++LAELAA AVD PKTGK V Sbjct: 905 HMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLV 964 Query: 2932 IMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLESPYDPEGIPYD 3111 MP L+PK+YPDFMGKE+F+SYKSKKILG LYR++K+ + E S P+ IPYD Sbjct: 965 TMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYD 1024 Query: 3112 ADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNKKQREL 3291 LEI S I +AW KCSYDGQLN LLGQYKV+ E+EVV+G++WSMP+YN KKQ EL Sbjct: 1025 TTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGEL 1084 Query: 3292 KEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWVKKSLE 3471 KE+LKHAY +L+KEF+NVFE + PD D+K MYE+KASAWYQVTYHP WV +SLE Sbjct: 1085 KERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLE 1144 Query: 3472 LRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSYLASH 3633 L+ + + V LSFAWI A+YL RIKIR ++ +P NSL YL + Sbjct: 1145 LQLADAVSNTV--MLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDN 1196