BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004705
         (4068 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1628   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1619   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1609   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1603   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1546   0.0  

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1628 bits (4215), Expect = 0.0
 Identities = 778/1199 (64%), Positives = 962/1199 (80%), Gaps = 5/1199 (0%)
 Frame = +1

Query: 46   ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 225
            E E   KE +VTQVS GGF   V AK+L ++L+  IG ++WRCRLK SWTPPES PNF++
Sbjct: 2    EAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 226  QNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHS 405
             +I+ +++T+DY +V PHAFVHFA P SAT A NA+GRCELF N   L V+LGP+  F  
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 406  NQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAF 585
            NQ+RR T PFK S+V  EIG L S +EF  GW+GP SGVDF+VDPFDGTCK  F++ TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 586  SFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDS 765
            S KST++ AV+KC+FK+EF + +I E+ QY   S L++L+QL+SAP V+YRTADDDI   
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 766  VPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPC---R 936
            VPFDLLDD+DPWIRTTDFT  G IGR +SY +S+ PR G KL KAVKY +ERRV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 937  SFLQRLKVLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFEL 1113
            +  +R+++L+EP   +P +  FFC+   + I+FEV+++VNAVMHKGI NQ QLS  FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1114 LRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLI 1293
            LR+Q  EVN+ AL H+  YRRPVF+AY+RLK VQ+WLLKNP   K  + L   +E+ RL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1294 ITPTRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDIT 1473
            ITPT+AYCLPPEVELSNRVLRKYK+ ADRFLRVTFMDEG  ++N+NVL+YYVAPIVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1474 SNSFPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKK 1653
            SNSFPQKT +FKRV+++L+EGFYLCGR+YSFLAFS+NQLRD+SAWFF+E++ I+V D+K 
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1654 WMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDL 1833
            WMGKF N+N+AKCAARMGQCFSSTY T++VP +EVN D PDIERN +VFSDGIGI+TPDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1834 AAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVI 2010
            A EVAEKL+L  + P AYQIRYAGCKGV+A WPGK DG+RL LRPSMNKF+S+H  +E+ 
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2011 TWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDE 2190
            +WTRFQPGFLNRQ++TLLS+L VP+ VF K+Q++MV  L+QM  N D+A DV+ +SC D+
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2191 GNTAALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLE 2370
            GN AA+M+S GFKP  EPHL+G+++C+RA+QL DL +K RIFV S RWLMGCLDELG+LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2371 QGQCFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIP 2550
            QGQCFIQVS+ SLE CF+KHG K S    NL+VIKGTVV+AKNPCLHPGD+RVLEAVD+P
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2551 ALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAK 2730
             LHHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW  M Y  AEAK
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 2731 TLPRAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDS 2910
             L R VNHQDIIEFF++NMVN+NLG ICNAHVVHAD SEYGA D+ C+ LAELAATAVD 
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 2911 PKTGKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLESPYD 3090
            PKTGK V MP  L+PK+YPDFMGKE+++SYKS+KILG LYR+IK+A++E+V +S E    
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 3091 PEGIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYN 3270
            P  IPYD+DLE+  ++D I +AW  KCSYDGQLN LL QYKV  E+EVV+GH+WSMP+Y+
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3271 NKKQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQ 3450
            ++KQ ELK++LKH+Y SLKKEF+ +FE ++ +  + +  +K ++YEQKASAWYQV YHP 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3451 WVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSYLA 3627
            WVKKSLEL+  + D       LSFAWI A+YL RIKIR   T N+++ +P NSL  YLA
Sbjct: 1141 WVKKSLELQ--DPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLA 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1619 bits (4192), Expect = 0.0
 Identities = 796/1203 (66%), Positives = 964/1203 (80%), Gaps = 4/1203 (0%)
 Frame = +1

Query: 28   MESVGSENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPES 207
            MES GSE     K+M+VTQ+S GGF + V A EL  +LED IG  + RCRLK S TPPES
Sbjct: 1    MESEGSE-----KDMVVTQISIGGFDQYVTATELTYYLEDTIGS-VDRCRLKTSSTPPES 54

Query: 208  LPNFQVQNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGP 387
             P+F++ + + +++T+DY+KVEPHAFVHF SP +AT A +AAG+ ELF +  PL V+LGP
Sbjct: 55   YPDFEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGP 114

Query: 388  EGSFHSNQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILF 567
            E  FH NQ+RR T PFKF +V  EIG L S +E+  GW+GP+SGVDF+VDPFDGTCK LF
Sbjct: 115  ETPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLF 174

Query: 568  TKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTAD 747
            TK+TAFSFK   K AV+KCNFK+EF + EI EV+Q +++S+LI+L+QLSS+P V+YRTAD
Sbjct: 175  TKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTAD 234

Query: 748  DDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRV 927
            DDI ++VPFDLLDD+DPWIRTTDFT  G IGR NSY IS+ PR G KL KA+ Y   RRV
Sbjct: 235  DDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRV 294

Query: 928  PCR--SFLQRLKVLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSE 1098
                 S   +L+V +EP   +P +  FFC+   + I F V+++VNAVMHKGIINQ QLS+
Sbjct: 295  NVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSD 354

Query: 1099 KFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIE 1278
            KFF+LLRSQ K++NI AL H+  YR PVFDAY+RLK+V KWLLKNPK +K  + LD  +E
Sbjct: 355  KFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVE 414

Query: 1279 VHRLIITPTRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPI 1458
            V RL+ITP++AYCLPPEVELSNRVLR YKE +DRFLRVTFMDEG   +N NVL+YYVAPI
Sbjct: 415  VRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPI 474

Query: 1459 VRDITSNSFPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINV 1638
            V+ ITSNSFPQKT VFKRVKT+L++GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKK +V
Sbjct: 475  VKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSV 534

Query: 1639 TDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGI 1818
              IK WMGKF N+NVAKCAARMGQCFSSTY TV+VPS EV  + PDI+RN + FSDGIG 
Sbjct: 535  RAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGK 593

Query: 1819 LTPDLAAEVAEKLQLTETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNI 1998
            + PDLA EVAEKL+L  TPSAYQIRYAGCKGV+A WP  +DGIRL  RPSMNKF S H I
Sbjct: 594  IVPDLAMEVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTI 653

Query: 1999 IEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISS 2178
            +E+ +WTRFQPGFLNRQ+VTLLS+L VP+++F K+Q+SM+  L+QMLT+ D+A DV+I+S
Sbjct: 654  LEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIAS 713

Query: 2179 CGDEGNTAALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDEL 2358
            C ++GNTAA+M+S GFKPQ EPHL+G+++CIRA+Q   L +KARIFV S RWLMGCLDEL
Sbjct: 714  CAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDEL 773

Query: 2359 GLLEQGQCFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEA 2538
            G+LEQGQCFIQVSSPSLE+CF+KHG + S    NLKVIKG V +AKNPCLHPGD+R+LEA
Sbjct: 774  GVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCLHPGDVRILEA 832

Query: 2539 VDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSP 2718
            VD P L HLVDCLVFPQ GDRPHSNEASGSDLDGDLYFVTW+  LIPPS++SWP M Y  
Sbjct: 833  VDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDS 892

Query: 2719 AEAKTLPRAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAAT 2898
            AEAK L R V   DII+FF++NMVNENLG ICNAHVVHAD+SEYGA+DE C+ LAE AAT
Sbjct: 893  AEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAAT 952

Query: 2899 AVDSPKTGKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLE 3078
            AVD PKTGK V +P  L+PK+YPDFMGKE+F++Y+S KILG +YR+IK+A+ E+V  S E
Sbjct: 953  AVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSE 1012

Query: 3079 SPYDPEGIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSM 3258
              +  + +P+D DL I  S D I +AW HKCSYDGQLN LLGQYKV  E+EVV+GHVWSM
Sbjct: 1013 QIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSM 1072

Query: 3259 PRYNNKKQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVT 3438
            P+Y ++KQ EL E+LKHAY SLKKEF+ +FE +N D  +   D+K ++YEQKASAWYQVT
Sbjct: 1073 PKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVT 1132

Query: 3439 YHPQWVKKSLELRRIEE-DDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLV 3615
            YHP WVKKSLEL+  +E   +RV   LSFAWI A+YL RIKIR+ GT N+++ +P NSL 
Sbjct: 1133 YHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLA 1190

Query: 3616 SYL 3624
             +L
Sbjct: 1191 RFL 1193


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1609 bits (4166), Expect = 0.0
 Identities = 775/1197 (64%), Positives = 950/1197 (79%), Gaps = 3/1197 (0%)
 Frame = +1

Query: 46   ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 225
            E E   KE +VTQVS GGF   V AK+L ++LE EIG ++WRCRLK SWTPPES PNF++
Sbjct: 2    ETEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 226  QNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHS 405
             +I+ + +T+DY +VEPHAFVHFA P SAT A +AA RCELF N   L  +LGPE  F  
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 406  NQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAF 585
            NQ+RR T PFK S V  EIGTL S +EF  GW+GP +GVDF+VDPFDGTC+  F++ TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 586  SFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDS 765
            SFKSTA+ AV+KC+FK+EF + +I E+KQY   S L++L+QL+SAPRV+YRTADDDI  S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 766  VPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPCRSFL 945
            VPFDLLDD+DPWIRTTDFT  G IGR +SY +S+ PR GPKL KAV + +ERRV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 946  QRLKVLEEPSADVP-PNSFFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFELLRS 1122
            + +++ +EP   +P  + FFC+   + I+F+V+++VNAVMHKGI NQ QLS  FF+LLR+
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 1123 QSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLIITP 1302
            Q  EVN+ AL H+Y YRRPVFDAYK+LK+ Q+WLLKNPK  K  + LD   E+ RL+ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 1303 TRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDITSNS 1482
            T+AYCLPPEVELSNRVLRKYK+ ADRFLRVTFMDEG   +N+N L+Y+ APIVR ITS S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 1483 FPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKKWMG 1662
            FPQKT +FKRV+++L+EGFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ INV  IK WMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 1663 KFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAE 1842
            KF NKN+AKCAARMGQCFSSTY T++VP +EVN D PDI+RN + FSDGIG++TPDLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 1843 VAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWT 2019
            VAEKL+   + P AYQIRYAGCKGV+A WP + DGIRL LR SMNKF+S+H I+E+ +WT
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 2020 RFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNT 2199
            RFQPGFLNRQ++TLLS+L VP+ VF K+Q+ MV  L+QML + D+A DV+ +SC ++GN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720

Query: 2200 AALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQ 2379
            AA+M+S GFKPQ EPHL+G+++C+RA+QL  L +KARIFV S RWLMGCLDELG+LEQGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 2380 CFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALH 2559
            CFIQVS+  LE+CFVKHG K S    NL+V+KGTVV+AKNPCLHPGDIR+LEAVD P LH
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 2560 HLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKTLP 2739
            HL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW  M Y  AEAK L 
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 2740 RAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKT 2919
            R VNHQDI+EFF++NM NENLG ICNAHVV AD SEYGA+DEKC+ LAELAATAVD PKT
Sbjct: 901  RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 2920 GKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAF-EEEVLSSLESPYDPE 3096
            GK V MP  L+PK+YPDFMGKE+ +SYKSKKILG LYR+IK+A+ +++V +S E  +   
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020

Query: 3097 GIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNK 3276
             IPYD DLE+  + D I +AW  KCSYDGQLN LL QYKV  E+EVV+GHVWSMP+ +++
Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080

Query: 3277 KQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWV 3456
            KQ +LKE+LKH+Y  LK+EF+ VFE ++ D  +   D+K  +YE+KASAWYQVTYHP W+
Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWI 1140

Query: 3457 KKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSYLA 3627
            +KSLEL+  + D   +   LSFAWI A+YL RIKIR     N+++ +P NSL  YLA
Sbjct: 1141 QKSLELQ--DSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLA 1195


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1603 bits (4152), Expect = 0.0
 Identities = 777/1202 (64%), Positives = 945/1202 (78%), Gaps = 8/1202 (0%)
 Frame = +1

Query: 46   ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 225
            E ++  KE +VTQVSFGGF KDV A++L  +L++EIG  +WRCRLK SWTPPES PNF++
Sbjct: 2    ETKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIG-QVWRCRLKTSWTPPESYPNFEI 60

Query: 226  QNISDVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHS 405
             + + +Q+ D Y +VEPHAFVHFASP+SAT AKNAAG CELF+N  P+ V+LGPE  FH 
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 406  NQKRRNTDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAF 585
            NQ+RR T PFK S+V  EIGTL S +EFL GW+GP SGVDF+VDPFDG CK  FT++TAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 586  SFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDS 765
            SFK T + AV++C+FKLEF + +I E+KQY + S L++L+QL+SAP V+YRTADDDI   
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 766  VPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPCRSFL 945
            VPFDLLDD+DPWIRTTDFTP G IGR NSY +S+ PR G KL +A+ +  ERRV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 946  QRLKVLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFELLRS 1122
            + L V  EP  ++P +  FFC+   + + F ++++VNAVMHKGI NQ QLS+ FF+LLR+
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 1123 QSKEVNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLIITP 1302
            Q  +VNI AL H+  Y+ PVFDA+KRLK VQ+WLLKNPK  + S+ LD  +E+ RL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1303 TRAYCLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDITSNS 1482
            TRAYCLPPEVELSNRVLR+YK+ AD+FLRVTFMDEG   +N N L+YY APIVRDITSNS
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 1483 FPQKTAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKKWMG 1662
            F QKT +FKRVK++L++GFYLCGRKYSFLAFSSNQLRDRSAWFFAED K +V+ I+ WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 1663 KFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAE 1842
            KF N+N+AKCAARMGQCFSSTY TV+VPS E   D PDIERN+++FSDGIG++TPDLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 1843 VAEKLQL-TETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWT 2019
            VAEKL+L    P AYQIRYAGCKGV+A WP   DGIRL LR SMNKF S+H  +E+ +WT
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 2020 RFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNT 2199
            RFQPGFLNRQ++TLLS+L VP+E+F K+Q  MV  L+QM  + D+A DV+ +SC ++GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 2200 AALMISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQ 2379
            AA+M+S GF P+ EPHL G+++CIRA+QL  L +K RIFV S RWLMGCLDELG+LE GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 2380 CFIQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALH 2559
            CFIQVS+PSLE CF KHG + S     L+V+KGTVV+AKNPCLHPGDIR+LEAVD P LH
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 2560 HLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKTLP 2739
            HL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWD NLIPPS+ SW  M Y  AEAK L 
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 2740 RAVNHQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKT 2919
            R VNHQDII+FF++NMVNENLG ICNAHVVHAD SEYGA+DE CI+LAELAATAVD PKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 2920 GKFVIMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAF------EEEVLSSLES 3081
            GK V MP  L+PKLYPDFMGKED++SY S KILG LYR++K+ +      +++  +S E 
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020

Query: 3082 PYDPEGIPYDADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMP 3261
                  IPYD DLE++ S+D I +AW  KCSYDGQL  LL QYKV  E+EVV+GH+WSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080

Query: 3262 RYNNKKQRELKEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTY 3441
            + N++KQ ELKE+LK +Y SLKKEF+ VFE ++ D  +   D+K  +YEQKASAWYQV Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140

Query: 3442 HPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSY 3621
            HP+WV KS+EL+  E D     + LSFAWI A+YL RIKIR  G D ++T +P NSLV Y
Sbjct: 1141 HPKWVNKSMELQ--EPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKY 1198

Query: 3622 LA 3627
            LA
Sbjct: 1199 LA 1200


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1546 bits (4004), Expect = 0.0
 Identities = 764/1194 (63%), Positives = 931/1194 (77%), Gaps = 4/1194 (0%)
 Frame = +1

Query: 64   KEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVQNISDV 243
            KE++VTQ+S GGF  DV AK L+++LE+++G  +WRCRLK S TPP+S P + + +   V
Sbjct: 8    KELVVTQISVGGFDNDVNAKMLSEYLEEQVG-QVWRCRLKISSTPPDSYPTYDI-DAEKV 65

Query: 244  QKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGPEGSFHSNQKRRN 423
            Q+ ++YEKV PHAFVHFAS  SA  A  AAG  EL   + PL+V+LGPE  +  NQ+RR 
Sbjct: 66   QRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125

Query: 424  TDPFKFSEVCAEIGTLASLNEFLGGWKGPASGVDFVVDPFDGTCKILFTKETAFSFKSTA 603
            T PFKFS+V  E+G L S ++F+ GW+GP +GVDF+VDPF+GTCKILFTK+TAFSF+  A
Sbjct: 126  TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185

Query: 604  KQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSSAPRVFYRTADDDIYDSVPFDLL 783
            + A++KCNFK+EF + EI E+K+ K+ ++L++L QL+S+P VFYRTADDDI +SV FDLL
Sbjct: 186  RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245

Query: 784  DDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSKAVKYFEERRVPCRSFLQR--LK 957
            DD+D WIRTTD T  G IGR N+Y IS+ PR GP   KA+ YF  RRVP      R  L+
Sbjct: 246  DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305

Query: 958  VLEEPSADVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGIINQFQLSEKFFELLRSQSKE 1134
            V +EP   V  +  FFC    + ISF V+++VNAV+HKGI+NQ Q++ +FF LLRS  +E
Sbjct: 306  VKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEE 364

Query: 1135 VNIKALTHMYCYRRPVFDAYKRLKIVQKWLLKNPKGIKGSRVLDHNIEVHRLIITPTRAY 1314
            VN  AL HM+ Y+ PV DA ++L  +QKWLLKNPK +  +  LD  +EV RL+ITPT+AY
Sbjct: 365  VNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAY 424

Query: 1315 CLPPEVELSNRVLRKYKESADRFLRVTFMDEGFDQLNTNVLSYYVAPIVRDITSNSFPQK 1494
            CLPP VELSNRVLR YK  ADRFLRVTFMDEG   LN NVL+YY A IVR+ITSNS PQ+
Sbjct: 425  CLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQR 484

Query: 1495 TAVFKRVKTVLSEGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKINVTDIKKWMGKFKN 1674
            TA+F+RVK++LS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAED KI V  I  WMG+F N
Sbjct: 485  TAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN 544

Query: 1675 KNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDFVFSDGIGILTPDLAAEVAEK 1854
            +NVAKCAARMGQCFSSTY TV+VPS EVN + PDIERN +VFSDGIG+++ DLA EVAEK
Sbjct: 545  RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEK 604

Query: 1855 LQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSMNKFESSHNIIEVITWTRFQP 2031
            L L+   PSAYQIRYAGCKGV+A WP K+DGIRL LRPSM KF+S+H I+E+ +WTRFQP
Sbjct: 605  LHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQP 664

Query: 2032 GFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPDIALDVIISSCGDEGNTAALM 2211
            GFLNRQ+VTLLSSL V + +F ++Q  M+  LD+ML + D+A DVI +SC + GNTAALM
Sbjct: 665  GFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALM 724

Query: 2212 ISGGFKPQIEPHLKGVISCIRASQLGDLLDKARIFVSSARWLMGCLDELGLLEQGQCFIQ 2391
            +S GFKPQ EPHL+G++S IRASQLGDL +KARIFV S RWLMGCLDELG LEQGQCFIQ
Sbjct: 725  LSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQ 784

Query: 2392 VSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLHPGDIRVLEAVDIPALHHLVD 2571
            VSSPSLE+CFVKHG K S    NL+V+KG VV+AKNPCLHPGD+R+LEAVD+P+L HL D
Sbjct: 785  VSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYD 844

Query: 2572 CLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRESWPAMDYSPAEAKTLPRAVN 2751
            CLVFPQ GDRPHSNEASGSDLDGDLYFVTWD NLIPPS++SW  M+Y PAE K L R VN
Sbjct: 845  CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVN 904

Query: 2752 HQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKCIQLAELAATAVDSPKTGKFV 2931
            H DII+FFS+NMV E+LG ICNAHVVHAD SE+GA+DEKC++LAELAA AVD PKTGK V
Sbjct: 905  HMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLV 964

Query: 2932 IMPHSLRPKLYPDFMGKEDFKSYKSKKILGVLYRKIKNAFEEEVLSSLESPYDPEGIPYD 3111
             MP  L+PK+YPDFMGKE+F+SYKSKKILG LYR++K+  + E   S      P+ IPYD
Sbjct: 965  TMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYD 1024

Query: 3112 ADLEIACSNDLIQEAWTHKCSYDGQLNALLGQYKVHSEDEVVSGHVWSMPRYNNKKQREL 3291
              LEI  S   I +AW  KCSYDGQLN LLGQYKV+ E+EVV+G++WSMP+YN KKQ EL
Sbjct: 1025 TTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGEL 1084

Query: 3292 KEKLKHAYKSLKKEFKNVFENVNPDLLEAQGDQKIQMYEQKASAWYQVTYHPQWVKKSLE 3471
            KE+LKHAY +L+KEF+NVFE + PD      D+K  MYE+KASAWYQVTYHP WV +SLE
Sbjct: 1085 KERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLE 1144

Query: 3472 LRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGTDNLNTCQPKNSLVSYLASH 3633
            L+  +   + V   LSFAWI A+YL RIKIR       ++ +P NSL  YL  +
Sbjct: 1145 LQLADAVSNTV--MLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDN 1196