BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004687
         (2623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271311.1| PREDICTED: cytochrome b-c1 complex subunit R...   377   e-101
ref|XP_002297879.1| predicted protein [Populus trichocarpa] gi|2...   375   e-101
ref|XP_002512828.1| ubiquinol-cytochrome C reductase iron-sulfur...   372   e-100
sp|P49729.1|UCRI1_TOBAC RecName: Full=Cytochrome b-c1 complex su...   370   1e-99
sp|P51132.1|UCRI2_TOBAC RecName: Full=Cytochrome b-c1 complex su...   369   2e-99

>ref|XP_002271311.1| PREDICTED: cytochrome b-c1 complex subunit Rieske-2, mitochondrial
            [Vitis vinifera] gi|296085532|emb|CBI29264.3| unnamed
            protein product [Vitis vinifera]
          Length = 272

 Score =  377 bits (967), Expect = e-101
 Identities = 197/285 (69%), Positives = 220/285 (77%)
 Frame = -1

Query: 1114 AAPAMISRNLINGGGHSAKDGDDYNTRSIVVPFYGFNSRSDLFFFGSTRGFASDSLTSRP 935
            A+ A++SR       HS+  GD  ++RSI  P   FNS     F    RGF+S+SL    
Sbjct: 22   ASSALLSRI------HSSNGGDG-SSRSISSPHL-FNSE----FRDLIRGFSSESLAPSH 69

Query: 934  DTGMMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRL 755
            D GM+ ++PPTVAA++NPTSKIVYDD+NHERFPPGDPSKRAFAYFVLTGGRF+YASLIRL
Sbjct: 70   DLGMISDLPPTVAALKNPTSKIVYDDHNHERFPPGDPSKRAFAYFVLTGGRFIYASLIRL 129

Query: 754  LILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLANSVD 575
            L+LKFVLSMSASKDVLALAS+EVD+SSIEPGSTVTVKWRGKPVFIRRRTEDDI+LANSVD
Sbjct: 130  LVLKFVLSMSASKDVLALASIEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVD 189

Query: 574  VATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAXXXXXXXXXXXXXXXXXXXXXXX 395
            V +LRDPQEDAVRVK+PEWLIV+GVCTHLGCIP                           
Sbjct: 190  VGSLRDPQEDAVRVKDPEWLIVIGVCTHLGCIP--------------------------- 222

Query: 394  XXCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 260
                 LPNAGDFGGWFCPCHGSHYD+SGRIRKGPAPYNLEVPTYS
Sbjct: 223  -----LPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYS 262


>ref|XP_002297879.1| predicted protein [Populus trichocarpa] gi|222845137|gb|EEE82684.1|
            predicted protein [Populus trichocarpa]
          Length = 275

 Score =  375 bits (964), Expect = e-101
 Identities = 197/289 (68%), Positives = 221/289 (76%), Gaps = 2/289 (0%)
 Frame = -1

Query: 1120 NQAAPAMISRNLINGGGHSAKDGDDY--NTRSIVVPFYGFNSRSDLFFFGSTRGFASDSL 947
            +Q   A +SRN        + DG D   ++R I+ P Y F+   DL      RGF+S +L
Sbjct: 19   SQTTSAFVSRNT----AFVSDDGRDSAASSRPILSP-YQFSFPPDLI-----RGFSSGAL 68

Query: 946  TSRPDTGMMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFAYFVLTGGRFVYAS 767
            TS  D G++ ++PPTVAAV+NPTSKIVYD++NHER+PPGDPSKRAFAYFVLTGGRFVYAS
Sbjct: 69   TSGHDMGIISDLPPTVAAVKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYAS 128

Query: 766  LIRLLILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLA 587
            LIRLL+LKFVLSMSASKDVLA+ASLEVD+SSIEPGSTVTVKWRGKPVFIRRRTEDDI+LA
Sbjct: 129  LIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLA 188

Query: 586  NSVDVATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAXXXXXXXXXXXXXXXXXXX 407
            NSVD+A+LRDPQEDA RVKNPEWL+VVGVCTHLGCIP                       
Sbjct: 189  NSVDLASLRDPQEDAARVKNPEWLVVVGVCTHLGCIP----------------------- 225

Query: 406  XXXXXXCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 260
                     LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS
Sbjct: 226  ---------LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 265


>ref|XP_002512828.1| ubiquinol-cytochrome C reductase iron-sulfur subunit, putative
            [Ricinus communis] gi|223547839|gb|EEF49331.1|
            ubiquinol-cytochrome C reductase iron-sulfur subunit,
            putative [Ricinus communis]
          Length = 280

 Score =  372 bits (956), Expect = e-100
 Identities = 196/288 (68%), Positives = 220/288 (76%), Gaps = 1/288 (0%)
 Frame = -1

Query: 1120 NQAAPAMI-SRNLINGGGHSAKDGDDYNTRSIVVPFYGFNSRSDLFFFGSTRGFASDSLT 944
            NQAA + I SRN INGG  S+ D  D  ++ ++  ++ F  +    F    RGF+SDSL 
Sbjct: 22   NQAATSAIASRNPINGGDSSSSD--DVKSK-VLNDYFAFRPQ----FHIPHRGFSSDSLM 74

Query: 943  SRPDTGMMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFAYFVLTGGRFVYASL 764
             + + G++  +P TVAA++NPT KIVYD+YNHERFPPGDPSKRAFAYFVLTGGRFVYASL
Sbjct: 75   PKNEDGIVSEVPATVAAIKNPTPKIVYDEYNHERFPPGDPSKRAFAYFVLTGGRFVYASL 134

Query: 763  IRLLILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLAN 584
            IRLLILK VLSMSASKDVLALASLEVD+SSIEPG+TVTVKWRGKPVFIRRRTEDDI+LAN
Sbjct: 135  IRLLILKLVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLAN 194

Query: 583  SVDVATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAXXXXXXXXXXXXXXXXXXXX 404
            SV++A+LRDPQ DA RVKNPEWLIVVGVCTHLGCIP                        
Sbjct: 195  SVELASLRDPQPDADRVKNPEWLIVVGVCTHLGCIP------------------------ 230

Query: 403  XXXXXCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 260
                    LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS
Sbjct: 231  --------LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 270


>sp|P49729.1|UCRI1_TOBAC RecName: Full=Cytochrome b-c1 complex subunit Rieske-1,
            mitochondrial; AltName: Full=Complex III subunit 5-1;
            AltName: Full=Rieske iron-sulfur protein 1; Short=RISP1;
            AltName: Full=Ubiquinol-cytochrome c reductase
            iron-sulfur subunit 1; Flags: Precursor
            gi|170322|gb|AAA34112.1| Rieske Fe-S protein, partial
            [Nicotiana tabacum]
          Length = 258

 Score =  370 bits (950), Expect = 1e-99
 Identities = 189/285 (66%), Positives = 214/285 (75%)
 Frame = -1

Query: 1114 AAPAMISRNLINGGGHSAKDGDDYNTRSIVVPFYGFNSRSDLFFFGSTRGFASDSLTSRP 935
            ++ A IS N      H + D D  + RSI              F   TRGF+S+S++   
Sbjct: 9    SSSAFISAN------HFSSDDDSSSPRSISPSLASV-------FLHHTRGFSSNSVSPAH 55

Query: 934  DTGMMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRL 755
            D G++P++PPTVAA++NPTSKIVYD++NHER+PPGDPSKRAFAYFVLTGGRFVYASL+RL
Sbjct: 56   DMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRL 115

Query: 754  LILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLANSVD 575
            LILKFVLSMSASKDVLALASLEVD+SSIEPG+TVTVKWRGKPVFIRRRTEDDI LANSVD
Sbjct: 116  LILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVD 175

Query: 574  VATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAXXXXXXXXXXXXXXXXXXXXXXX 395
            + +LRDPQ+DA RVKNPEWL+V+GVCTHLGCIP                           
Sbjct: 176  LGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIP--------------------------- 208

Query: 394  XXCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 260
                 LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS
Sbjct: 209  -----LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 248


>sp|P51132.1|UCRI2_TOBAC RecName: Full=Cytochrome b-c1 complex subunit Rieske-2,
            mitochondrial; AltName: Full=Complex III subunit 5-2;
            AltName: Full=Rieske iron-sulfur protein 2; Short=RISP2;
            AltName: Full=Ubiquinol-cytochrome c reductase
            iron-sulfur subunit 2; Flags: Precursor
            gi|530052|gb|AAA20831.1| Rieske iron-sulfur protein
            [Nicotiana tabacum]
          Length = 272

 Score =  369 bits (947), Expect = 2e-99
 Identities = 188/285 (65%), Positives = 214/285 (75%)
 Frame = -1

Query: 1114 AAPAMISRNLINGGGHSAKDGDDYNTRSIVVPFYGFNSRSDLFFFGSTRGFASDSLTSRP 935
            ++ A IS N      H + D D  + RSI              F   TRGF+S+S++   
Sbjct: 23   SSSAFISAN------HFSSDDDSSSPRSISPSLASV-------FLHHTRGFSSNSVSHAH 69

Query: 934  DTGMMPNIPPTVAAVQNPTSKIVYDDYNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRL 755
            D G++P++PPTVAA++NPTSKIVYD++NHER+PPGDPSKRAFAYFVLTGGRFVYASL+RL
Sbjct: 70   DMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRL 129

Query: 754  LILKFVLSMSASKDVLALASLEVDISSIEPGSTVTVKWRGKPVFIRRRTEDDIQLANSVD 575
            LILKFVLSMSASKDVLALASLEVD+SSIEPG+TVTVKWRGKPVFIRRRTEDDI LANSVD
Sbjct: 130  LILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVD 189

Query: 574  VATLRDPQEDAVRVKNPEWLIVVGVCTHLGCIPLPNAXXXXXXXXXXXXXXXXXXXXXXX 395
            + +LRDPQ+DA RVK+PEWL+V+GVCTHLGCIP                           
Sbjct: 190  LGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIP--------------------------- 222

Query: 394  XXCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 260
                 LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS
Sbjct: 223  -----LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYS 262