BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004636
         (617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    98   1e-18
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    97   2e-18
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    89   6e-16
ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|2...    84   2e-14
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    79   6e-13

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 71/204 (34%), Positives = 97/204 (47%)
 Frame = +3

Query: 3   TWTPVTLDKWSRFFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGR 182
           +WT   L+    +  DV +++G FY V     + V         +  +     I E P +
Sbjct: 198 SWT--FLEDAQSYAEDVIFHRGLFYAVNKYGSIAVC-------DVSGSSPRVSIIEMPQQ 248

Query: 183 VDVDQQSYILESSGDLLIVLRNIVEDKDPSTDNKLQIPPLKTVGFQVYKLDFGSPNKWIE 362
              D Q Y++ES  +LL+V R +    D   D    I   +T  FQV +LD  +P +W  
Sbjct: 249 FGGDLQ-YLVESGEELLLVTRYLDLTYDVEPDQTSLI--YRTTRFQVCRLDLKAP-RWEV 304

Query: 363 IQSLGNRAXXXXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDG 542
           + SLG+RA                 GCK NCIY+TDDY  D      G QD+GIFNLEDG
Sbjct: 305 VSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDG 364

Query: 543 SVNKFLYPSETLLVMPPPIWFTPN 614
           S+   L  S   +  PPP+W TPN
Sbjct: 365 SIEP-LPCSHFRIRWPPPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 71/204 (34%), Positives = 97/204 (47%)
 Frame = +3

Query: 3   TWTPVTLDKWSRFFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGR 182
           +WT   L+    +  DV +++G FY V     + V         +  +     I E P +
Sbjct: 198 SWT--FLEDAQSYSEDVIFHRGLFYAVNKYGSIAVC-------DVSGSSPRVSIIEMPQQ 248

Query: 183 VDVDQQSYILESSGDLLIVLRNIVEDKDPSTDNKLQIPPLKTVGFQVYKLDFGSPNKWIE 362
              D Q Y++ES  +LL+V R +    D   D    I   +T  FQV +LD  +P +W  
Sbjct: 249 FGGDLQ-YLVESGEELLLVTRYLDLTYDVEXDQTSLI--YRTTRFQVCRLDSKAP-RWEV 304

Query: 363 IQSLGNRAXXXXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDG 542
           + SLG+RA                 GCK NCIY+TDDY  D      G QD+GIFNLEDG
Sbjct: 305 VSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDG 364

Query: 543 SVNKFLYPSETLLVMPPPIWFTPN 614
           S+   L  S   +  PPP+W TPN
Sbjct: 365 SIEP-LPCSHFRIRWPPPLWVTPN 387


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 61/195 (31%), Positives = 86/195 (44%), Gaps = 3/195 (1%)
 Frame = +3

Query: 39  FFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGRVDVDQQSYILES 218
           F  DV Y+ G FY V  +  + V         + +  T       P ++  D Q Y++ S
Sbjct: 212 FSEDVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIET-------PRQIGGDMQ-YLVSS 263

Query: 219 SGDLLIVLRNIVEDKDPSTDNKLQIPPLKTVGFQVYKLDFGSPNKWIEIQSLGNRAXXXX 398
              LL+V R +        D +  I   KT  F+V+KLD   P +W  + SLG+      
Sbjct: 264 GDGLLLVTRYL------DLDVEFDIFIYKTARFEVFKLDLNGP-RWERVTSLGDMMLFIG 316

Query: 399 XXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDGSVNKF-LYP--S 569
                        GC  +CIY+TDDY  +      G  D+GIF L DGS+     YP  S
Sbjct: 317 ENSSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNS 376

Query: 570 ETLLVMPPPIWFTPN 614
            + L  PPP+W +PN
Sbjct: 377 YSRLQWPPPLWISPN 391


>ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|222848975|gb|EEE86522.1|
           predicted protein [Populus trichocarpa]
          Length = 462

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 13/150 (8%)
 Frame = +3

Query: 204 YILESSGDLLIVLRNIVE----------DKDPSTDNKLQ--IPPLKTVGFQVYKLDFGSP 347
           Y++ESSG +L+V+R I E          + D  TD   +  +   +T+ F ++++DF   
Sbjct: 313 YLVESSGGVLLVVRRIGEFVDEEGRVLHEGDLLTDKAAEPLVCAYRTLLFGLFRMDFDKE 372

Query: 348 NKWIEIQSLGNRAXXXXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILK-HGFGGQDMGI 524
             W+ + SL ++A                 GC+ N +YFTDDY   + + + +GG DMG+
Sbjct: 373 T-WVSMTSLDDQAVFVGGNHSASVLTCDLPGCEKNSVYFTDDYWERMNEDYLYGGHDMGV 431

Query: 525 FNLEDGSVNKFLYPSETLLVMPPPIWFTPN 614
           FNL+D SV  F Y  + L + PPP WF PN
Sbjct: 432 FNLKDKSVKHF-YQLDALKIQPPPCWFLPN 460


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 5/197 (2%)
 Frame = +3

Query: 39  FFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGRVDVDQQSYILES 218
           F  DV +  G FY V  +  + +         + +  T       P +   D Q Y++ S
Sbjct: 211 FCEDVIFVNGMFYAVNKAGQIVICDISSDSPRVSFMET-------PRQAGGDMQ-YLVNS 262

Query: 219 SGDLLIVLRNIVEDKDPSTDNKLQIPPL--KTVGFQVYKLDFGSPNKWIEIQSLGNRAXX 392
             +LL+V R +  D +   D+    P L  +T+ F+V++LD+  P +W+ + +LG++A  
Sbjct: 263 GDELLLVTRYL--DLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGP-QWLRMSTLGDKALF 319

Query: 393 XXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDGSVNKF-LYPS 569
                          GC  NCIY+TDDY        FG  D+GIF L D ++     YP 
Sbjct: 320 IGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPR 379

Query: 570 E--TLLVMPPPIWFTPN 614
              + L   PP+W +PN
Sbjct: 380 NFTSPLQWSPPLWVSPN 396