BLASTX nr result
ID: Coptis21_contig00004636
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00004636 (617 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 98 1e-18 emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 97 2e-18 ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 89 6e-16 ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|2... 84 2e-14 ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 79 6e-13 >ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera] Length = 389 Score = 98.2 bits (243), Expect = 1e-18 Identities = 71/204 (34%), Positives = 97/204 (47%) Frame = +3 Query: 3 TWTPVTLDKWSRFFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGR 182 +WT L+ + DV +++G FY V + V + + I E P + Sbjct: 198 SWT--FLEDAQSYAEDVIFHRGLFYAVNKYGSIAVC-------DVSGSSPRVSIIEMPQQ 248 Query: 183 VDVDQQSYILESSGDLLIVLRNIVEDKDPSTDNKLQIPPLKTVGFQVYKLDFGSPNKWIE 362 D Q Y++ES +LL+V R + D D I +T FQV +LD +P +W Sbjct: 249 FGGDLQ-YLVESGEELLLVTRYLDLTYDVEPDQTSLI--YRTTRFQVCRLDLKAP-RWEV 304 Query: 363 IQSLGNRAXXXXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDG 542 + SLG+RA GCK NCIY+TDDY D G QD+GIFNLEDG Sbjct: 305 VSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDG 364 Query: 543 SVNKFLYPSETLLVMPPPIWFTPN 614 S+ L S + PPP+W TPN Sbjct: 365 SIEP-LPCSHFRIRWPPPLWVTPN 387 >emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] Length = 389 Score = 97.4 bits (241), Expect = 2e-18 Identities = 71/204 (34%), Positives = 97/204 (47%) Frame = +3 Query: 3 TWTPVTLDKWSRFFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGR 182 +WT L+ + DV +++G FY V + V + + I E P + Sbjct: 198 SWT--FLEDAQSYSEDVIFHRGLFYAVNKYGSIAVC-------DVSGSSPRVSIIEMPQQ 248 Query: 183 VDVDQQSYILESSGDLLIVLRNIVEDKDPSTDNKLQIPPLKTVGFQVYKLDFGSPNKWIE 362 D Q Y++ES +LL+V R + D D I +T FQV +LD +P +W Sbjct: 249 FGGDLQ-YLVESGEELLLVTRYLDLTYDVEXDQTSLI--YRTTRFQVCRLDSKAP-RWEV 304 Query: 363 IQSLGNRAXXXXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDG 542 + SLG+RA GCK NCIY+TDDY D G QD+GIFNLEDG Sbjct: 305 VSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDG 364 Query: 543 SVNKFLYPSETLLVMPPPIWFTPN 614 S+ L S + PPP+W TPN Sbjct: 365 SIEP-LPCSHFRIRWPPPLWVTPN 387 >ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1| predicted protein [Populus trichocarpa] Length = 393 Score = 89.0 bits (219), Expect = 6e-16 Identities = 61/195 (31%), Positives = 86/195 (44%), Gaps = 3/195 (1%) Frame = +3 Query: 39 FFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGRVDVDQQSYILES 218 F DV Y+ G FY V + + V + + T P ++ D Q Y++ S Sbjct: 212 FSEDVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIET-------PRQIGGDMQ-YLVSS 263 Query: 219 SGDLLIVLRNIVEDKDPSTDNKLQIPPLKTVGFQVYKLDFGSPNKWIEIQSLGNRAXXXX 398 LL+V R + D + I KT F+V+KLD P +W + SLG+ Sbjct: 264 GDGLLLVTRYL------DLDVEFDIFIYKTARFEVFKLDLNGP-RWERVTSLGDMMLFIG 316 Query: 399 XXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDGSVNKF-LYP--S 569 GC +CIY+TDDY + G D+GIF L DGS+ YP S Sbjct: 317 ENSSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNS 376 Query: 570 ETLLVMPPPIWFTPN 614 + L PPP+W +PN Sbjct: 377 YSRLQWPPPLWISPN 391 >ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|222848975|gb|EEE86522.1| predicted protein [Populus trichocarpa] Length = 462 Score = 84.3 bits (207), Expect = 2e-14 Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 13/150 (8%) Frame = +3 Query: 204 YILESSGDLLIVLRNIVE----------DKDPSTDNKLQ--IPPLKTVGFQVYKLDFGSP 347 Y++ESSG +L+V+R I E + D TD + + +T+ F ++++DF Sbjct: 313 YLVESSGGVLLVVRRIGEFVDEEGRVLHEGDLLTDKAAEPLVCAYRTLLFGLFRMDFDKE 372 Query: 348 NKWIEIQSLGNRAXXXXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILK-HGFGGQDMGI 524 W+ + SL ++A GC+ N +YFTDDY + + + +GG DMG+ Sbjct: 373 T-WVSMTSLDDQAVFVGGNHSASVLTCDLPGCEKNSVYFTDDYWERMNEDYLYGGHDMGV 431 Query: 525 FNLEDGSVNKFLYPSETLLVMPPPIWFTPN 614 FNL+D SV F Y + L + PPP WF PN Sbjct: 432 FNLKDKSVKHF-YQLDALKIQPPPCWFLPN 460 >ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 398 Score = 79.0 bits (193), Expect = 6e-13 Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 5/197 (2%) Frame = +3 Query: 39 FFRDVTYYQGNFYVVRNSRYVGVVRGLETPETIPYTHTEQIISEPPGRVDVDQQSYILES 218 F DV + G FY V + + + + + T P + D Q Y++ S Sbjct: 211 FCEDVIFVNGMFYAVNKAGQIVICDISSDSPRVSFMET-------PRQAGGDMQ-YLVNS 262 Query: 219 SGDLLIVLRNIVEDKDPSTDNKLQIPPL--KTVGFQVYKLDFGSPNKWIEIQSLGNRAXX 392 +LL+V R + D + D+ P L +T+ F+V++LD+ P +W+ + +LG++A Sbjct: 263 GDELLLVTRYL--DLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGP-QWLRMSTLGDKALF 319 Query: 393 XXXXXXXXXXXXXXXGCKPNCIYFTDDYGVDILKHGFGGQDMGIFNLEDGSVNKF-LYPS 569 GC NCIY+TDDY FG D+GIF L D ++ YP Sbjct: 320 IGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPR 379 Query: 570 E--TLLVMPPPIWFTPN 614 + L PP+W +PN Sbjct: 380 NFTSPLQWSPPLWVSPN 396